Pregenerated sensors for RTL8B (Homo sapiens)
Ensembl gene IDs: ENSG00000212747Ensembl transcript IDs: ENST00000391440.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GATTCATTTACTAAGAGGCTTGGGATAATCCTAACTGGTTTAGAGGATTCAACAGTGCATGGGAGGGGCTaGGCTGGCACGAGAGGGCGG | + |
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Preference number: 2 (lower is better) Translates to: DSFTKRLGIILTGLEDSTVHGRG*AGTRGR Trigger: CCGCCCTCTCGTGCCAGCTCAGCCCCTCCCATGCAC...TGTTGAATCCTCTAAACCAGTTAGGATTATCCCAAGCCTCTTAGTAAATGAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| 3UTR-3UTR CCA 90 bp | AATCCTAACTGGTTTAGAGGATTCAACATCTGGGACAGAAGGATCACCAGTGGGACATCAGTCACTGAATaGCAGGGGATATCGCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: NPNWFRGFNIWDRRITSGTSVTE*QGISLL Trigger: CAGAAGCGATATCCCCTGCCATTCAGTGACTGATGT...CCCACTGGTGATCCTTCTGTCCCAGATGTTGAATCCTCTAAACCAGTTAGGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| 3UTR CAA 90 bp | AGCTGTTCACCAATAATCTGTGTGGGATTTATGGTTTGTAACAATTaGGGAATTGTGTTTTCAAACCACTTTCTGGAAATGAGGATACAT | + |
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Preference number: 2 (lower is better) Translates to: SCSPIICVGFMVCNN*GIVFSNHFLEMRIH Trigger: ATGTATCCTCATTTCCAGAAAGTGGTTTGAAAACACAATTCCCAAATTGTTACAAACCATAAATCCCACACAGATTATTGGTGAACAGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| 3UTR-3UTR GCA 90 bp | CTATATAATTCTGTTGGTTCCCTGAATCATGGGTTGAGTAAAATTTTACAGCTGAAGCACCTGAGAAAATaGTGCAAATTCAGAAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: LYNSVGSLNHGLSKILQLKHLRK*CKFRRE Trigger: TTCTCTTCTGAATTTGCAGCATTTTCTCAGGTGCTT...CAGCTGTAAAATTTTACTCAACCCATGATTCAGGGAACCAACAGAATTATATAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| 3UTR CCA 72 bp | TGGGATAATCCTAACTGGTTTAGAGGATTCAACATCTaGGACAGAAGGATCACCAGTGGGGACACTATCCCC | + |
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Preference number: 3 (lower is better) Translates to: WDNPNWFRGFNI*DRRITSGDTIP Trigger: GGGGATAGTGTCCCCACTGGTGATCCTTCTGTCCCAGATGTTGAATCCTCTAAACCAGTTAGGATTATCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| 3UTR GCA 72 bp | CACTTTCTGGAAATGAGGATACATTTTCCAAGAGCCTaGTGGCTGACTTCTCACATAGTGTTGACCAAAATG | + |
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Preference number: 3 (lower is better) Translates to: HFLEMRIHFPRA*WLTSHIVLTKM Trigger: CATTTTGGTCAACACTATGTGAGAAGTCAGCCAGCAGGCTCTTGGAAAATGTATCCTCATTTCCAGAAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS-3UTR TCA 90 bp | ATTCAACATCTGGGACAGAAGGATCACCAGTGGGGACACTATCCCCCAGGTTACGTGCATGGGAGGGGCTaGGCTGGCACGAGAGGGCGG | + |
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Preference number: 4 (lower is better) Translates to: IQHLGQKDHQWGHYPPGYVHGRG*AGTRGR Trigger: CCGCCCTCTCGTGCCAGCTCAGCCCCTCCCATGCAC...GTAACCTGGGGGATAGTGTCCCCACTGGTGATCCTTCTGTCCCAGATGTTGAAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS-3UTR TCA 90 bp | GGATCACCAGTGGGGACACTATCCCCCAGGTTACCACAGGACTCTATCTTAGATTTTTACCCAAGCTTATaGAATGTACCAGGATCACAT | + |
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Preference number: 4 (lower is better) Translates to: GSPVGTLSPRLPQDSILDFYPSL*NVPGSH Trigger: ATGTGATCCTGGTACATTTCATAAGCTTGGGTAAAA...ATCTAAGATAGAGTCCTGTGGTAACCTGGGGGATAGTGTCCCCACTGGTGATCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS-3UTR CCA 90 bp | GATTCATTTACTAAGAGGCTTGGGATAATCCTAACTGGTTTAGAGGATTCAACACAGAAGGATCACCAGTaGGGACACTATCCCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: DSFTKRLGIILTGLEDSTQKDHQ*GHYPPG Trigger: ACCTGGGGGATAGTGTCCCCACTGGTGATCCTTCTG...TGTTGAATCCTCTAAACCAGTTAGGATTATCCCAAGCCTCTTAGTAAATGAATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS-3UTR CCA 90 bp | ATTCAACATCTGGGACAGAAGGATCACCAGTGGGGACACTATCCCCCAGGTTACTCTGTGTGGGATTTATaGTTTGTAACAATTTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: IQHLGQKDHQWGHYPPGYSVWDL*FVTIWE Trigger: TTCCCAAATTGTTACAAACCATAAATCCCACACAGA...GTAACCTGGGGGATAGTGTCCCCACTGGTGATCCTTCTGTCCCAGATGTTGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS-3UTR TCA 90 bp | AATCCTAACTGGTTTAGAGGATTCAACATCTGGGACAGAAGGATCACCAGTGGGACCACTTTCTGGAAATaGGGATACATTTTCCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: NPNWFRGFNIWDRRITSGTTFWK*GYIFQE Trigger: CTCTTGGAAAATGTATCCTCATTTCCAGAAAGTGGT...CCCACTGGTGATCCTTCTGTCCCAGATGTTGAATCCTCTAAACCAGTTAGGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS-3UTR GCA 90 bp | AATCCTAACTGGTTTAGAGGATTCAACATCTGGGACAGAAGGATCACCAGTGGGAAGCACCTGAGAAAATaGTGCAAATTCAGAAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: NPNWFRGFNIWDRRITSGKHLRK*CKFRRE Trigger: TTCTCTTCTGAATTTGCAGCATTTTCTCAGGTGCTT...CCCACTGGTGATCCTTCTGTCCCAGATGTTGAATCCTCTAAACCAGTTAGGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS-3UTR CCA 90 bp | GATTCATTTACTAAGAGGCTTGGGATAATCCTAACTGGTTTAGAGGATTCAACAACATCAGTCACTGAATaGCAGGGGATATCGCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: DSFTKRLGIILTGLEDSTTSVTE*QGISLL Trigger: CAGAAGCGATATCCCCTGCCATTCAGTGACTGATGT...TGTTGAATCCTCTAAACCAGTTAGGATTATCCCAAGCCTCTTAGTAAATGAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS-3UTR CCA 90 bp | GATTCATTTACTAAGAGGCTTGGGATAATCCTAACTGGTTTAGAGGATTCAACATTTCCAAGAGCCTGCTaGCTGACTTCTCACATAGTG | + |
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Preference number: 4 (lower is better) Translates to: DSFTKRLGIILTGLEDSTFPRAC*LTSHIV Trigger: CACTATGTGAGAAGTCAGCCAGCAGGCTCTTGGAAA...TGTTGAATCCTCTAAACCAGTTAGGATTATCCCAAGCCTCTTAGTAAATGAATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS-3UTR CCA 90 bp | CTATATAATTCTGTTGGTTCCCTGAATCATGGGTTGAGTAAAATTTTACAGCTGAGAGGATTCAACATCTaGGACAGAAGGATCACCAGT | + |
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Preference number: 4 (lower is better) Translates to: LYNSVGSLNHGLSKILQLRGFNI*DRRITS Trigger: ACTGGTGATCCTTCTGTCCCAGATGTTGAATCCTCT...CAGCTGTAAAATTTTACTCAACCCATGATTCAGGGAACCAACAGAATTATATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| 3UTR CAA 72 bp | CCAATAATCTGTGTGGGATTTATGGTTTGTAACAATTaGGGAATTGTGTTTTCAAACCACTTTCTGGAAATG | + |
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Preference number: 4 (lower is better) Translates to: PIICVGFMVCNN*GIVFSNHFLEM Trigger: CATTTCCAGAAAGTGGTTTGAAAACACAATTCCCAAATTGTTACAAACCATAAATCCCACACAGATTATTGG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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| CDS CCA 72 bp | GCCGCGCTGGCTCCGCTGAGTTTAGCTGAGCTGCGCTaGGCTTCGCCGGGGGCTGCACCGAGGCGTAGCGGG | + |
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Preference number: 6 (lower is better) Translates to: AALAPLSLAELR*ASPGAAPRRSG Trigger: CCCGCTACGCCTCGGTGCAGCCCCCGGCGAAGCCCAGCGCAGCTCAGCTAAACTCAGCGGAGCCAGCGCGGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000391440.3 |
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