Pregenerated sensors for RTL8A (Homo sapiens)
Ensembl gene IDs: ENSG00000203950Ensembl transcript IDs: ENST00000370775.3, ENST00000520964.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCACAGCGCGCTCTAGAGTaGGGCCCAGGAGCTGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: EGACGDPSGGHWHSELFPQRALE*GPGAAA Trigger: TGCTGCAGCTCCTGGGCCGCACTCTAGAGCGCGCTG...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS-3UTR CCA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCATGTGCATGGAGGGGCTaGGCTGGCAAAAGAGGGCGG | + |
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Preference number: 4 (lower is better) Translates to: EGACGDPSGGHWHSELFPCAWRG*AGKRGR Trigger: CCGCCCTCTTTTGCCAGCCCAGCCCCTCCATGCACA...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS-3UTR CCA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCACTGGAGGAGTGGAGGTaGGTTGGCAGCAGCGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: EGACGDPSGGHWHSELFPLEEWR*VGSSGC Trigger: ACAGCCGCTGCTGCCAACCCACCTCCACTCCTCCAG...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS-3UTR CCA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCAGGCAGTCTGGAGGAGTaGAGGTGGGTTGGCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: EGACGDPSGGHWHSELFPGSLEE*RWVGSS Trigger: GCTGCTGCCAACCCACCTCCACTCCTCCAGACTGCC...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS-3UTR CCA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCACCTAGCGGTGGCCACTaGCACAGCGAACTCTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: EGACGDPSGGHWHSELFPPSGGH*HSELFP Trigger: TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGG...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS-3UTR CCA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCAAGTTGGCTGGCAGTCTaGAGGAGTGGAGGTGGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: EGACGDPSGGHWHSELFPSWLAV*RSGGGL Trigger: CAACCCACCTCCACTCCTCCAGACTGCCAGCCAACT...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS-3UTR GCA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCAGAGATTCGATTTGGTTaGCAGGCACACTTAAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: EGACGDPSGGHWHSELFPEIRFG*QAHLSP Trigger: AGGGCTTAAGTGTGCCTGGCAACCAAATCGAATCTC...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS-3UTR TCA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCAGTCCACAGGAGAAAATaGGAGATTCGATTTGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: EGACGDPSGGHWHSELFPVHRRK*EIRFGC Trigger: GCAACCAAATCGAATCTCTCATTTTCTCCTGTGGAC...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS CCA 90 bp | GCACCCGACCGTCCATCGTGCCGCGCGCGCTCCGCGGAGTTTCGCTaGGTTGCGTGGGGGTCAGCGCTAAGGCGTCGCCGGAAGCGCATG | + |
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Preference number: 5 (lower is better) Translates to: APDRPSCRARSAEFR*VAWGSALRRRRKRM Trigger: CATGCGCTTCCGGCGACGCCTTAGCGCTGACCCCCACGCAACCCAGCGAAACTCCGCGGAGCGCGCGCGGCACGATGGACGGTCGGGTGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000520964.1 |
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| CDS GCA 90 bp | CGACCGTCCATCGTGCCGCGCGCGCTCCGCGGAGTTTCGCTGGGTTaGGTGGGGGTCAGCGCTAAGGCGTCGCCGGAAGCGCATGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: RPSIVPRALRGVSLG*VGVSAKASPEAHVE Trigger: CTCGACATGCGCTTCCGGCGACGCCTTAGCGCTGACCCCCACGCAACCCAGCGAAACTCCGCGGAGCGCGCGCGGCACGATGGACGGTCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000520964.1 |
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| CDS CCA 90 bp | CGTCCATCGTGCCGCGCGCGCTCCGCGGAGTTTCGCTGGGTTGCGTaGGGGTCAGCGCTAAGGCGTCGCCGGAAGCGCATGTCGAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: RPSCRARSAEFRWVA*GSALRRRRKRMSRV Trigger: CACCCTCGACATGCGCTTCCGGCGACGCCTTAGCGCTGACCCCCACGCAACCCAGCGAAACTCCGCGGAGCGCGCGCGGCACGATGGACG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000520964.1 |
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| CDS-3UTR CAA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCAAGGAGCCACAGTCTGTaGGTGAGATGCGGTGGATGG | + |
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Preference number: 5 (lower is better) Translates to: EGACGDPSGGHWHSELFPRSHSL*VRCGGW Trigger: CCATCCACCGCATCTCACCAACAGACTGTGGCTCCT...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS-3UTR CAA 90 bp | GAGGGCGCCTGTGGAGACCCTAGCGGTGGCCACTGGCACAGCGAACTCTTCCCAAGAGATTCGATTTGGTaGCCAGGCACACTTAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: EGACGDPSGGHWHSELFPRDSIW*PGTLKP Trigger: GGGCTTAAGTGTGCCTGGCAACCAAATCGAATCTCT...TGGGAAGAGTTCGCTGTGCCAGTGGCCACCGCTAGGGTCTCCACAGGCGCCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370775.3 |
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| CDS CCA 72 bp | CGTCCATCGTGCCGCGCGCGCTCCGCGGAGTTTCGCTaGGTTGCGTGGGGGTCAGCGCTAAGGCGTCGCCGG | + |
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Preference number: 6 (lower is better) Translates to: RPSCRARSAEFR*VAWGSALRRRR Trigger: CCGGCGACGCCTTAGCGCTGACCCCCACGCAACCCAGCGAAACTCCGCGGAGCGCGCGCGGCACGATGGACG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000520964.1 |
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| CDS GCA 72 bp | ATCGTGCCGCGCGCGCTCCGCGGAGTTTCGCTGGGTTaGGTGGGGGTCAGCGCTAAGGCGTCGCCGGAAGCG | + |
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Preference number: 6 (lower is better) Translates to: IVPRALRGVSLG*VGVSAKASPEA Trigger: CGCTTCCGGCGACGCCTTAGCGCTGACCCCCACGCAACCCAGCGAAACTCCGCGGAGCGCGCGCGGCACGAT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000520964.1 |
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| CDS CCA 72 bp | TGCCGCGCGCGCTCCGCGGAGTTTCGCTGGGTTGCGTaGGGGTCAGCGCTAAGGCGTCGCCGGAAGCGCATG | + |
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Preference number: 6 (lower is better) Translates to: CRARSAEFRWVA*GSALRRRRKRM Trigger: CATGCGCTTCCGGCGACGCCTTAGCGCTGACCCCCACGCAACCCAGCGAAACTCCGCGGAGCGCGCGCGGCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000520964.1 |
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