RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RSL1D1 (Homo sapiens)

Ensembl gene IDs: ENSG00000171490

Ensembl transcript IDs: ENST00000355674.9, ENST00000396503.7, ENST00000570767.5, ENST00000571133.6, ENST00000572090.5, ENST00000573029.1, ENST00000573251.5, ENST00000573618.5, ENST00000573791.1, ENST00000574287.1

Found 253 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGGGCTCCCAGAGCTCACGGCCTTCACAGCCTCCACCATCCCGATaGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCTTTTTCTCAAT +
Preference number: 1 (lower is better)
Translates to: VGSQSSRPSQPPPSR*SAGPTSLSNCLFLN
Trigger: ATTGAGAAAAAGACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTGAAGGCCGTGAGCTCTGGGAGCCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR GCA 90 bp CTCCCAGAGCTCACGGCCTTCACAGCCTCCACCATCCCGATGGTCTaGTGGTCCTACTTCTCTCTCAAACTGTCTTTTTCTCAATCCTTT +
Preference number: 1 (lower is better)
Translates to: LPELTAFTASTIPMV*WSYFSLKLSFSQSF
Trigger: AAAGGATTGAGAAAAAGACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTGAAGGCCGTGAGCTCTGGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CCA 90 bp TTGGAATATGTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTaGAACACCAAGCTCTGTGCTAAAGGGTGGAAGGCTGCCCTGACG +
Preference number: 1 (lower is better)
Translates to: LEYVQGQGSKTPCGL*NTKLCAKGWKAALT
Trigger: CGTCAGGGCAGCCTTCCACCCTTTAGCACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGACATATTCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CCA 90 bp AAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTGCTAAAGGGTaGAAGGCTGCCCTGACGCACCATAATCTAAGCCCAGGGCATAAA +
Preference number: 1 (lower is better)
Translates to: KTPCGLWNTKLCAKG*KAALTHHNLSPGHK
Trigger: TTTATGCCCTGGGCTTAGATTATGGTGCGTCAGGGCAGCCTTCCACCCTTTAGCACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 90 bp AAAGCAGTTGAGTCTTTGGCATGCAAGAACATTCCTGCACTGCAGTaGATCTGTGAACTTACTACTACGGATGCATACCAATTCACAACC +
Preference number: 1 (lower is better)
Translates to: KAVESLACKNIPALQ*ICELTTTDAYQFTT
Trigger: GGTTGTGAATTGGTATGCATCCGTAGTAGTAAGTTCACAGATTCACTGCAGTGCAGGAATGTTCTTGCATGCCAAAGACTCAACTGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CCA 90 bp ACCACACAGCTATTGCTGGAAAATTATGTCATGCAGAGAACAGACTaGCACGATTACATATGTGGGTTTGTCCTACACAAACCAGACCTT +
Preference number: 1 (lower is better)
Translates to: TTQLLLENYVMQRTD*HDYICGFVLHKPDL
Trigger: AAGGTCTGGTTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATAATTTTCCAGCAATAGCTGTGTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 90 bp AATGACTCCATGTTAATTTCCCTTCCCATATGGATGCTAATCCAGTaGCTCATAAGCTTAGACCAACAAGCTCAGCATGAAAGCCAAGAA +
Preference number: 1 (lower is better)
Translates to: NDSMLISLPIWMLIQ*LISLDQQAQHESQE
Trigger: TTCTTGGCTTTCATGCTGAGCTTGTTGGTCTAAGCTTATGAGTCACTGGATTAGCATCCATATGGGAAGGGAAATTAACATGGAGTCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 90 bp ATGCAAGAACAGGAAAGTAAACACCTGTGTCATGTTCAACAAGACTaGACTACGGAGCAAAGAATCACACAGTGTTGCAAGATCTTGAAC +
Preference number: 1 (lower is better)
Translates to: MQEQESKHLCHVQQD*TTEQRITQCCKILN
Trigger: GTTCAAGATCTTGCAACACTGTGTGATTCTTTGCTCCGTAGTTCAGTCTTGTTGAACATGACACAGGTGTTTACTTTCCTGTTCTTGCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR GCA 90 bp ATAGGATTACAAAAACCACACAGCTATTGCTGGAAAATTATGTCATaGAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTAC +
Preference number: 1 (lower is better)
Translates to: IGLQKPHSYCWKIMS*REQTGTITYVGLSY
Trigger: GTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATAATTTTCCAGCAATAGCTGTGTGGTTTTTGTAATCCTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CCA 90 bp GGAAAATTATGTCATGCAGAGAACAGACTGGCACGATTACATATGTaGGTTTGTCCTACACAAACCAGACCTTTAAGTGAAACAAGTCTA +
Preference number: 1 (lower is better)
Translates to: GKLCHAENRLARLHM*VCPTQTRPLSETSL
Trigger: TAGACTTGTTTCACTTAAAGGTCTGGTTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATAATTTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp CACAGCCTCCACCATCCCGATGGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCCCTCTTGCGCTCACTTaGTCCTTCCACCTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: HSLHHPDGLLVLLLSQTVPLALT*SFHLSL
Trigger: GAGGCTGAGGTGGAAGGATCAAGTGAGCGCAAGAGG...GACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCTACAGCACAGTGGGGTaGTCGTGGCTCACTGGAGCC +
Preference number: 2 (lower is better)
Translates to: LFLLNSVADSHTARPSLGYSTVG*SWLTGA
Trigger: GGCTCCAGTGAGCCACGATCACCCCACTGTGCTGTA...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCCAGGCTACAGCACAGTaGGGTGATCGTGGCTCACTG +
Preference number: 2 (lower is better)
Translates to: LFLLNSVADSHTARPSLGQATAQ*GDRGSL
Trigger: CAGTGAGCCACGATCACCCCACTGTGCTGTAGCCTG...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CAA 90 bp GCCCACGAGAACATCATATACCATAGTAGAGATTTCGCCCTCCTCTaGGCCCCCGGGGGAGACTACTGTTGGCTCCTAGCACTATCAGCT +
Preference number: 2 (lower is better)
Translates to: AHENIIYHSRDFALL*APGGDYCWLLALSA
Trigger: AGCTGATAGTGCTAGGAGCCAACAGTAGTCTCCCCCGGGGGCCAAGAGGAGGGCGAAATCTCTACTATGGTATATGATGTTCTCGTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACAGCCTCGTGAGGAGCTaGGAGCACAGATGCATGCCA +
Preference number: 2 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDSLVRS*EHRCMP
Trigger: TGGCATGCATCTGTGCTCCCAGCTCCTCACGAGGCT...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCAGCGAGACCCTCACTaGGCCACTCTGGGAATGACT +
Preference number: 2 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDQRDPH*ATLGMT
Trigger: AGTCATTCCCAGAGTGGCCCAGTGAGGGTCTCGCTG...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CAA 90 bp TCTGCTGGTCCTACTTCTCTCTCAAACTGTCTTTTTCTCAATCCTTaGACTCCACTGGACTTTGTCACCCCCACGACCTGGTGTTGGGTC +
Preference number: 2 (lower is better)
Translates to: SAGPTSLSNCLFLNP*TPLDFVTPTTWCWV
Trigger: GACCCAACACCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTTGAGAGAGAAGTAGGACCAGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp CACAGCCTCCACCATCCCGATGGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCCACCCACATTATCTTTaGAAGCAGTTGAGTCTTTGG +
Preference number: 2 (lower is better)
Translates to: HSLHHPDGLLVLLLSQTVHPHYL*KQLSLW
Trigger: CCAAAGACTCAACTGCTTTCAAAGATAATGTGGGTG...GACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR GCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACAGCTGGGAGCACAGATaGATGCCACCATGCCACACT +
Preference number: 2 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDSWEHR*MPPCHT
Trigger: AGTGTGGCATGGTGGCATGCATCTGTGCTCCCAGCT...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR GCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAATTGCCCAGGCTGGAGTaGAGGATCGTGATCATGGCC +
Preference number: 2 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKLPRLE*RIVIMA
Trigger: GGCCATGATCACGATCCTGCACTCCAGCCTGGGCAA...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAGTGATCGTGGCTCACTaGAGCCTCAACCTCTTGCGC +
Preference number: 2 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKVIVAH*SLNLLR
Trigger: GCGCAAGAGGTTGAGGCTCCAGTGAGCCACGATCAC...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTTCAAGTCAGACCCACTaGTTTGGAAAGCCAACAGTA +
Preference number: 2 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCSSQTH*FGKPTV
Trigger: TACTGTTGGCTTTCCAAATCAGTGGGTCTGACTTGA...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTCATGTGAATAATGGTTaGGCAGGTGAGGAAAAGGGT +
Preference number: 2 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCHVNNG*AGEEKG
Trigger: ACCCTTTTCCTCACCTGCTCAACCATTATTCACATG...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTATGATGGAGTCCATGTaGATAATGGTTGAGCAGGTG +
Preference number: 2 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCMMESM*IMVEQV
Trigger: CACCTGCTCAACCATTATTCACATGGACTCCATCAT...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACCCTCCCGGGTTAAAGTaGTTCTCCTGCTTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHPPGLK*FSCFSL
Trigger: GAGGCTGAAGCAGGAGAATCACTTTAACCCGGGAGG...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR GCA 90 bp CACAGCCTCCACCATCCCGATGGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCAGAACATTCCTGCACTaGAGTGAATCTGTGAACTTA +
Preference number: 2 (lower is better)
Translates to: HSLHHPDGLLVLLLSQTVRTFLH*SESVNL
Trigger: TAAGTTCACAGATTCACTGCAGTGCAGGAATGTTCT...GACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACCGAAAAGCTGAGTGTTaGGAGAAGCTGAGGCAGGGC +
Preference number: 2 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHRKAEC*EKLRQG
Trigger: GCCCTGCCTCAGCTTCTCCCAACACTCAGCTTTTCG...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp GGTCTCAGATGCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTATTTGCATTCCAACGTaGCCAATACGTATAGCACTG +
Preference number: 2 (lower is better)
Translates to: GLRCWQSLSFLPTRCAGIICIPT*PIRIAL
Trigger: CAGTGCTATACGTATTGGTCACGTTGGAATGCAAAT...AATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGCATCTGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
3UTR-3UTR TCA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTGAGGCAAGGTCAATCTaGCCCTCAGTTCTTTACTTG +
Preference number: 2 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFEARSI*PSVLYL
Trigger: CAAGTAAAGAACTGAGGGTCAGATTGACCTTGCCTC...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000570767.5
3UTR-3UTR GCA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGGTTGAGTCTTTGGCATaGAAGAACATTCCTGCACTG +
Preference number: 2 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWVESLA*KNIPAL
Trigger: CAGTGCAGGAATGTTCTTGCATGCCAAAGACTCAAC...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTCAGGCTGGAGTGCAGTaGCTCACTGCAACCTCCGCC +
Preference number: 2 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSQAGVQ*LTATSA
Trigger: GGCGGAGGTTGCAGTGAGCCACTGCACTCCAGCCTG...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAACCCCTTGTGGTCTTTaGAACACCAAGCTCTGTGCT +
Preference number: 2 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKTPCGL*NTKLCA
Trigger: AGCACAGAGCTTGGTGTTCCAAAGACCACAAGGGGT...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR GCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGTTTGAGACTGAGTCTTaGTCTGTCATCAGGCTGGAG +
Preference number: 2 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKFETES*SVIRLE
Trigger: CTCCAGCCTGATGACAGAGCAAGACTCAGTCTCAAA...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR GCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAACCCAGCGTTCCAAAGTaGTGGGATTATGTTGCGAAA +
Preference number: 2 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKPSVPK*WDYVAK
Trigger: TTTCGCAACATAATCCCAGCACTTTGGAACGCTGGG...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CCA 90 bp TGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTCAGAAGGCGGAGCTTaGCTTCATAGGATTTATATT +
Preference number: 2 (lower is better)
Translates to: WQSLSFLPTRCAGIRTLCSEGGA*LHRIYI
Trigger: AATATAAATCCTATGAAGCCAAGCTCCGCCTTCTGA...GCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
3UTR-3UTR TCA 90 bp TTACTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGGCGGCCAGGATCTaGGTATTTCCAAAAAGCTCT +
Preference number: 2 (lower is better)
Translates to: LLLRMHTNSQPVKGHVPKKAARI*VFPKSS
Trigger: AGAGCTTTTTGGAAATACTCAGATCCTGGCCGCCTT...TTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAACTGCAGTGAATCTGTaGACTTACTACTACGGATGC +
Preference number: 2 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKTAVNL*TYYYGC
Trigger: GCATCCGTAGTAGTAAGTTCACAGATTCACTGCAGT...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR GCA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGAGGTGTCCACCACCATaGCCAATTAATTTTTGTATT +
Preference number: 2 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWRCPPP*PINFCI
Trigger: AATACAAAAATTAATTGGGCATGGTGGTGGACACCT...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACTGGATGCTAATCCAGTaGCTCATAAGCTTAGACCAA +
Preference number: 2 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHWMLIQ*LISLDQ
Trigger: TTGGTCTAAGCTTATGAGTCACTGGATTAGCATCCA...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR GCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACACTTACTACTACGGATaGATACCAATTCACAACCAG +
Preference number: 2 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDTYYYG*IPIHNQ
Trigger: CTGGTTGTGAATTGGTATGCATCCGTAGTAGTAAGT...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR TCA 90 bp GACAATTGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTTGGAGTTGTCACAAATCCATATGGACTaGGGAATAAGGAGGAAGAGG +
Preference number: 2 (lower is better)
Translates to: DNCGNVSNLLFQDSLELSQIHMD*GIRRKR
Trigger: CCTCTTCCTCCTTATTCCTCAGTCCATATGGATTTG...TGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACAATTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTTCAGACCCACTGATTTaGAAAGCCAACAGTATACTC +
Preference number: 2 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSSDPLI*KANSIL
Trigger: GAGTATACTGTTGGCTTTCCAAATCAGTGGGTCTGA...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 72 bp CGTGGCTCACTGGAGCCTCAACCTCTTGCGCTCACTTaGTCCTTCCACCTCAGCCTCGTGAGGAGCTGGGAG +
Preference number: 3 (lower is better)
Translates to: RGSLEPQPLALT*SFHLSLVRSWE
Trigger: CTCCCAGCTCCTCACGAGGCTGAGGTGGAAGGATCAAGTGAGCGCAAGAGGTTGAGGCTCCAGTGAGCCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CAA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAACGTGATCATGGCCCATaGCAGCCTCTACCTCCCGGG +
Preference number: 3 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKRDHGP*QPLPPG
Trigger: CCCGGGAGGTAGAGGCTGCAATGGGCCATGATCACG...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CAA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTGCACCCACATTATCTTaGAAAGCAGTTGAGTCTTTG +
Preference number: 3 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCAPTLS*KAVESL
Trigger: CAAAGACTCAACTGCTTTCAAAGATAATGTGGGTGC...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CAA 90 bp GGTCTCAGATGCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAATGATGTGCTCAATTaGCATTCCAACGTGACCAAT +
Preference number: 3 (lower is better)
Translates to: GLRCWQSLSFLPTRCAGINDVLN*HSNVTN
Trigger: ATTGGTCACGTTGGAATGCAAATTGAGCACATCATT...AATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGCATCTGAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
3UTR-3UTR CAA 90 bp GACAATTGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTTGGAGTTGTCAACCTCTTGCGCTCACTaGATCCTTCCACCTCAGCCT +
Preference number: 3 (lower is better)
Translates to: DNCGNVSNLLFQDSLELSTSCAH*ILPPQP
Trigger: AGGCTGAGGTGGAAGGATCAAGTGAGCGCAAGAGGT...TGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACAATTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 72 bp AAAAGGGTCACATCACAGACCTCAAGTCAGACCCACTaGTTTGGAAAGCCAACAGTATACTCAGAAGCAAAG +
Preference number: 3 (lower is better)
Translates to: KRVTSQTSSQTH*FGKPTVYSEAK
Trigger: CTTTGCTTCTGAGTATACTGTTGGCTTTCCAAATCAGTGGGTCTGACTTGAGGTCTGTGATGTGACCCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 72 bp GGCATGCAAGAACATTCCTGCACTGCAGTGAATCTGTaGACTTACTACTACGGATGCATACCAATTCACAAC +
Preference number: 3 (lower is better)
Translates to: GMQEHSCTAVNL*TYYYGCIPIHN
Trigger: GTTGTGAATTGGTATGCATCCGTAGTAGTAAGTTCACAGATTCACTGCAGTGCAGGAATGTTCTTGCATGCC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 72 bp GAGTCTTTGGCATGCAAGAACATTCCTGCACTGCAGTaGATCTGTGAACTTACTACTACGGATGCATACCAA +
Preference number: 3 (lower is better)
Translates to: ESLACKNIPALQ*ICELTTTDAYQ
Trigger: TTGGTATGCATCCGTAGTAGTAAGTTCACAGATTCACTGCAGTGCAGGAATGTTCTTGCATGCCAAAGACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR GCA 72 bp CAGTTGAGTCTTTGGCATGCAAGAACATTCCTGCACTaGAGTGAATCTGTGAACTTACTACTACGGATGCAT +
Preference number: 3 (lower is better)
Translates to: QLSLWHARTFLH*SESVNLLLRMH
Trigger: ATGCATCCGTAGTAGTAAGTTCACAGATTCACTGCAGTGCAGGAATGTTCTTGCATGCCAAAGACTCAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR-3UTR CAA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAACTCTTCCAAGATTCCTaGGAGTTGTCATACATAAGC +
Preference number: 3 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKLFQDS*ELSYIS
Trigger: GCTTATGTATGACAACTCCAAGGAATCTTGGAAGAG...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 72 bp GATCTGAGTATTTCCAAAAAGCTCTGGAGGCAGCATTaGGGTTTCCTTCCAGTTGAATCACTGACTTTAGGT +
Preference number: 3 (lower is better)
Translates to: DLSISKKLWRQH*GFLPVESLTLG
Trigger: ACCTAAAGTCAGTGATTCAACTGGAAGGAAACCTCAATGCTGCCTCCAGAGCTTTTTGGAAATACTCAGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396503.7
3UTR TCA 72 bp ACTTACTACTACGGATGCATACCAATTCACAACCAGTaGAAGGCCACGTACCTAAAAAGGTGTTTACTGCCT +
Preference number: 3 (lower is better)
Translates to: TYYYGCIPIHNQ*KATYLKRCLLP
Trigger: AGGCAGTAAACACCTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAGTAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 72 bp CAGGAAAGTAAACACCTGTGTCATGTTCAACAAGACTaGACTACGGAGCAAAGAATCACACAGTGTTGCAAG +
Preference number: 3 (lower is better)
Translates to: QESKHLCHVQQD*TTEQRITQCCK
Trigger: CTTGCAACACTGTGTGATTCTTTGCTCCGTAGTTCAGTCTTGTTGAACATGACACAGGTGTTTACTTTCCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CCA 72 bp TGTCATGCAGAGAACAGACTGGCACGATTACATATGTaGGTTTGTCCTACACAAACCAGACCTTTAAGTGAA +
Preference number: 3 (lower is better)
Translates to: CHAENRLARLHM*VCPTQTRPLSE
Trigger: TTCACTTAAAGGTCTGGTTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 72 bp ACTATCAGCTGGCTAGGAATGTGTATGCAACACTTCTaGAGCCTTGGAAACATAGTACAGAATGTACCCATT +
Preference number: 3 (lower is better)
Translates to: TISWLGMCMQHF*SLGNIVQNVPI
Trigger: AATGGGTACATTCTGTACTATGTTTCCAAGGCTTCAGAAGTGTTGCATACACATTCCTAGCCAGCTGATAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CCA 72 bp AACCCAGTGCCAACAATGAAATATCACCCTCATACTTaGCCCACGAGAACATCATATACCATAGTAGAGATT +
Preference number: 3 (lower is better)
Translates to: NPVPTMKYHPHT*PTRTSYTIVEI
Trigger: AATCTCTACTATGGTATATGATGTTCTCGTGGGCCAAGTATGAGGGTGATATTTCATTGTTGGCACTGGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 72 bp ATGTTAATTTCCCTTCCCATATGGATGCTAATCCAGTaGCTCATAAGCTTAGACCAACAAGCTCAGCATGAA +
Preference number: 3 (lower is better)
Translates to: MLISLPIWMLIQ*LISLDQQAQHE
Trigger: TTCATGCTGAGCTTGTTGGTCTAAGCTTATGAGTCACTGGATTAGCATCCATATGGGAAGGGAAATTAACAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CCA 72 bp CTATTGCTGGAAAATTATGTCATGCAGAGAACAGACTaGCACGATTACATATGTGGGTTTGTCCTACACAAA +
Preference number: 3 (lower is better)
Translates to: LLLENYVMQRTD*HDYICGFVLHK
Trigger: TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATAATTTTCCAGCAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR TCA 72 bp GAGCAAAGAATCACACAGTGTTGCAAGATCTTGAACTaGCTAGATGATAGGATTACAAAAACCACACAGCTA +
Preference number: 3 (lower is better)
Translates to: EQRITQCCKILN*LDDRITKTTQL
Trigger: TAGCTGTGTGGTTTTTGTAATCCTATCATCTAGTCAGTTCAAGATCTTGCAACACTGTGTGATTCTTTGCTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp CACAGCCTCCACCATCCCGATGGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCTGCTGTCGGGGCCGCTaGAGTCGAGGTGGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: HSLHHPDGLLVLLLSQTVCCRGR*SRGGGS
Trigger: GGAACCTCCACCTCGACTCCAGCGGCCCCGACAGCA...GACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CAA 72 bp TCGTGGCTCACTGGAGCCTCAACCTCTTGCGCTCACTaGATCCTTCCACCTCAGCCTCGTGAGGAGCTGGGA +
Preference number: 4 (lower is better)
Translates to: SWLTGASTSCAH*ILPPQPREELG
Trigger: TCCCAGCTCCTCACGAGGCTGAGGTGGAAGGATCAAGTGAGCGCAAGAGGTTGAGGCTCCAGTGAGCCACGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp CACAGCCTCCACCATCCCGATGGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCATCCAGCTGCTTCCGTaGTGTCGGGGCCGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: HSLHHPDGLLVLLLSQTVIQLLP*CRGRWS
Trigger: ACTCCAGCGGCCCCGACAGCACGGAAGCAGCTGGAT...GACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp CACAGCCTCCACCATCCCGATGGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCTACAGCACAGTGGGGTaGTCGTGGCTCACTGGAGCC +
Preference number: 4 (lower is better)
Translates to: HSLHHPDGLLVLLLSQTVYSTVG*SWLTGA
Trigger: GGCTCCAGTGAGCCACGATCACCCCACTGTGCTGTA...GACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GAGGATCACTTGAGTCAGGTCAGGGAGGTTGAGGTTGCAGTGAACACAGATCTCTGCTGTCGGGGCCGCTaGAGTCGAGGTGGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: EDHLSQVREVEVAVNTDLCCRGR*SRGGGS
Trigger: GGAACCTCCACCTCGACTCCAGCGGCCCCGACAGCA...GAGATCTGTGTTCACTGCAACCTCAACCTCCCTGACCTGACTCAAGTGATCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000572090.5
CDS-3UTR CCA 90 bp GCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAGACGTGCAACCCCACTGCTaGCTTCTGGTGCGCACGCGC +
Preference number: 4 (lower is better)
Translates to: AFLFFPRGVLGLGLFAGDVQPHC*LLVRTR
Trigger: GCGCGTGCGCACCAGAAGCCAGCAGTGGGGTTGCAC...GTCTCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS-3UTR GCA 90 bp GAGGATCACTTGAGTCAGGTCAGGGAGGTTGAGGTTGCAGTGAACACAGATCTCATCCAGCTGCTTCCGTaGTGTCGGGGCCGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: EDHLSQVREVEVAVNTDLIQLLP*CRGRWS
Trigger: ACTCCAGCGGCCCCGACAGCACGGAAGCAGCTGGAT...GAGATCTGTGTTCACTGCAACCTCAACCTCCCTGACCTGACTCAAGTGATCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000572090.5
CDS-3UTR GCA 90 bp GCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAGACCGTGTGCAACCCCACTaGTGGCTTCTGGTGCGCACG +
Preference number: 4 (lower is better)
Translates to: AFLFFPRGVLGLGLFAGDRVQPH*WLLVRT
Trigger: CGTGCGCACCAGAAGCCAGCAGTGGGGTTGCACACG...GTCTCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS-3UTR GCA 90 bp GAGGATCACTTGAGTCAGGTCAGGGAGGTTGAGGTTGCAGTGAACACAGATCTCGGTTCCAGTAGCGGCTaGAGAAGACAGCGAGGCCGA +
Preference number: 4 (lower is better)
Translates to: EDHLSQVREVEVAVNTDLGSSSG*RRQRGR
Trigger: TCGGCCTCGCTGTCTTCTGCAGCCGCTACTGGAACC...GAGATCTGTGTTCACTGCAACCTCAACCTCCCTGACCTGACTCAAGTGATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000572090.5
CDS-3UTR GCA 90 bp TGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCATCCAGCTGCTTCCGTaGTGTCGGGGCCGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: WQSLSFLPTRCAGIRTLCIQLLP*CRGRWS
Trigger: ACTCCAGCGGCCCCGACAGCACGGAAGCAGCTGGAT...GCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp AAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGATGCTGTCGGGGCCGCTaGAGTCGAGGTGGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: KAFLFFPRGVLGLGLFAGCCRGR*SRGGGS
Trigger: GGAACCTCCACCTCGACTCCAGCGGCCCCGACAGCA...TCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTTGCTGTCGGGGCCGCTaGAGTCGAGGTGGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFCCRGR*SRGGGS
Trigger: GGAACCTCCACCTCGACTCCAGCGGCCCCGACAGCA...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCGTGATCGTGGCTCACTaGAGCCTCAACCTCTTGCGC +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGVIVAH*SLNLLR
Trigger: GCGCAAGAGGTTGAGGCTCCAGTGAGCCACGATCAC...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCCTCTGTGCTAAAGGGTaGAAGGCTGCCCTGACGCAC +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGLCAKG*KAALTH
Trigger: GTGCGTCAGGGCAGCCTTCCACCCTTTAGCACAGAG...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GAGGATCACTTGAGTCAGGTCAGGGAGGTTGAGGTTGCAGTGAACACAGATCTCGGTGGGAGGATCACTTaGGTCAGGTCAGGGAGGTTG +
Preference number: 4 (lower is better)
Translates to: EDHLSQVREVEVAVNTDLGGRIT*VRSGRL
Trigger: CAACCTCCCTGACCTGACTCAAGTGATCCTCCCACC...GAGATCTGTGTTCACTGCAACCTCAACCTCCCTGACCTGACTCAAGTGATCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000572090.5
CDS-3UTR TCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTCCTCTTGCGCTCACTTaGTCCTTCCACCTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCPLALT*SFHLSL
Trigger: GAGGCTGAGGTGGAAGGATCAAGTGAGCGCAAGAGG...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTATCCAGCTGCTTCCGTaGTGTCGGGGCCGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFIQLLP*CRGRWS
Trigger: ACTCCAGCGGCCCCGACAGCACGGAAGCAGCTGGAT...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp AAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAATCCAGCTGCTTCCGTaGTGTCGGGGCCGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: KAFLFFPRGVLGLGLFAGIQLLP*CRGRWS
Trigger: ACTCCAGCGGCCCCGACAGCACGGAAGCAGCTGGAT...TCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCTGCTGTCGGGGCCGCTaGAGTCGAGGTGGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLCCRGR*SRGGGS
Trigger: GGAACCTCCACCTCGACTCCAGCGGCCCCGACAGCA...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp AGAAGGTTACAAAGGCGGCCAGGATCTGAGTATTTCCAAAAAGCTCTGGAGGCACAGGCTGGAGTGCAGTaGCTCACTGCAACCTCCGCC +
Preference number: 4 (lower is better)
Translates to: RRLQRRPGSEYFQKALEAQAGVQ*LTATSA
Trigger: GGCGGAGGTTGCAGTGAGCCACTGCACTCCAGCCTG...TGCCTCCAGAGCTTTTTGGAAATACTCAGATCCTGGCCGCCTTTGTAACCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTCAGGCTACAGCACAGTaGGGTGATCGTGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCQATAQ*GDRGSL
Trigger: CAGTGAGCCACGATCACCCCACTGTGCTGTAGCCTG...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCCTTGTTTCCACCTCGTaGAGAGGCGCGTGTGCAACC +
Preference number: 4 (lower is better)
Translates to: WQSLSFLPTRCAGIRTLCLVSTS*RGACAT
Trigger: GGTTGCACACGCGCCTCTTCACGAGGTGGAAACAAG...GCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS-3UTR GCA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTGGTTCCAGTAGCGGCTaGAGAAGACAGCGAGGCCGA +
Preference number: 4 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFGSSSG*RRQRGR
Trigger: TCGGCCTCGCTGTCTTCTGCAGCCGCTACTGGAACC...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp AAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAGGTTCCAGTAGCGGCTaGAGAAGACAGCGAGGCCGA +
Preference number: 4 (lower is better)
Translates to: KAFLFFPRGVLGLGLFAGGSSSG*RRQRGR
Trigger: TCGGCCTCGCTGTCTTCTGCAGCCGCTACTGGAACC...TCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCATCCAGCTGCTTCCGTaGTGTCGGGGCCGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLIQLLP*CRGRWS
Trigger: ACTCCAGCGGCCCCGACAGCACGGAAGCAGCTGGAT...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp GAGGATCACTTGAGTCAGGTCAGGGAGGTTGAGGTTGCAGTGAACACAGATCTCTGTTCTTTATCCAGCTaGTTCCGTGCTGTCGGGGCC +
Preference number: 4 (lower is better)
Translates to: EDHLSQVREVEVAVNTDLCSLSS*FRAVGA
Trigger: GGCCCCGACAGCACGGAAGCAGCTGGATAAAGAACA...GAGATCTGTGTTCACTGCAACCTCAACCTCCCTGACCTGACTCAAGTGATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000572090.5
CDS-3UTR GCA 90 bp AAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAGTGAAGAGGCGCGTGTaGAACCCCACTGCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: KAFLFFPRGVLGLGLFAGVKRRV*NPTAGF
Trigger: GAAGCCAGCAGTGGGGTTGCACACGCGCCTCTTCAC...TCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS-3UTR GCA 90 bp AGAAGGTTACAAAGGCGGCCAGGATCTGAGTATTTCCAAAAAGCTCTGGAGGCAAGTGCAGTGGCTCACTaGAACCTCCGCCTCCCAGGT +
Preference number: 4 (lower is better)
Translates to: RRLQRRPGSEYFQKALEASAVAH*NLRLPG
Trigger: ACCTGGGAGGCGGAGGTTGCAGTGAGCCACTGCACT...TGCCTCCAGAGCTTTTTGGAAATACTCAGATCCTGGCCGCCTTTGTAACCTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CAA 72 bp AACATCATATACCATAGTAGAGATTTCGCCCTCCTCTaGGCCCCCGGGGGAGACTACTGTTGGCTCCTAGCA +
Preference number: 4 (lower is better)
Translates to: NIIYHSRDFALL*APGGDYCWLLA
Trigger: TGCTAGGAGCCAACAGTAGTCTCCCCCGGGGGCCAAGAGGAGGGCGAAATCTCTACTATGGTATATGATGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCTGCAAGGTGCCCTTCTaGCCTTCACATTCTCACCAT +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGCKVPF*PSHSHH
Trigger: ATGGTGAGAATGTGAAGGTCAGAAGGGCACCTTGCA...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGCCTCCCGGGTTAAAGTaGTTCTCCTGCTTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWPPGLK*FSCFSL
Trigger: GAGGCTGAAGCAGGAGAATCACTTTAACCCGGGAGG...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGAAAACTGGCCAGCTGTaGTGGCATGCCCCTGTAGTC +
Preference number: 4 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWKTGQL*WHAPVV
Trigger: GACTACAGGGGCATGCCATCACAGCTGGCCAGTTTT...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCGGTTCCAGTAGCGGCTaGAGAAGACAGCGAGGCCGA +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLGSSSG*RRQRGR
Trigger: TCGGCCTCGCTGTCTTCTGCAGCCGCTACTGGAACC...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACGGTTCCAGTAGCGGCTaGAGAAGACAGCGAGGCCGA +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDGSSSG*RRQRGR
Trigger: TCGGCCTCGCTGTCTTCTGCAGCCGCTACTGGAACC...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTTGTTCTTTATCCAGCTaGTTCCGTGCTGTCGGGGCC +
Preference number: 4 (lower is better)
Translates to: AGKAFLFFPRGVLGLGLFCSLSS*FRAVGA
Trigger: GGCCCCGACAGCACGGAAGCAGCTGGATAAAGAACA...AAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp GGTCTCAGATGCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTGTCTTCCTAGCCTGCTaGCTCTTCTTCTTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: GLRCWQSLSFLPTRCAGIVFLAC*LFFFLS
Trigger: GGAGAGGAAGAAGAAGAGGCAGCAGGCTAGGAAGAC...AATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGCATCTGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTGCAGTCTTCCTAGCCTaGTGCCTCTTCTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCAVFLA*CLFFFL
Trigger: GAGGAAGAAGAAGAGGCAGCAGGCTAGGAAGACTGC...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTTGGTCTCAGAACTCCTaGCCTCAAGTGATCTGCCAG +
Preference number: 4 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCWSQNS*PQVICQ
Trigger: CTGGCAGATCACTTGAGGCCAGGAGTTCTGAGACCA...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAATCCACCTCAGCCTCGTaGGGAGCTGGGAGCACAGAT +
Preference number: 4 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKSTSAS*GAGSTD
Trigger: ATCTGTGCTCCCAGCTCCTCACGAGGCTGAGGTGGA...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp CACAGCCTCCACCATCCCGATGGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCCATGTGAATAATGGTTaGGCAGGTGAGGAAAAGGGT +
Preference number: 4 (lower is better)
Translates to: HSLHHPDGLLVLLLSQTVHVNNG*AGEEKG
Trigger: ACCCTTTTCCTCACCTGCTCAACCATTATTCACATG...GACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACAGCTACTTGGGAGGCTaGGGTGGGAAGATCGCCTTG +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDSYLGG*GGKIAL
Trigger: CAAGGCGATCTTCCCACCTCAGCCTCCCAAGTAGCT...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp TGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCGTCTTCCTAGCCTGCTaGCTCTTCTTCTTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: WQSLSFLPTRCAGIRTLCVFLAC*LFFFLS
Trigger: GGAGAGGAAGAAGAAGAGGCAGCAGGCTAGGAAGAC...GCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp GCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGTCTTCCTAGCCTGCTaGCTCTTCTTCTTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: AGKAFLFFPRGVLGLGLFVFLAC*LFFFLS
Trigger: GGAGAGGAAGAAGAAGAGGCAGCAGGCTAGGAAGAC...AAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp TGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCGCAGTCTTCCTAGCCTaGTGCCTCTTCTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: WQSLSFLPTRCAGIRTLCAVFLA*CLFFFL
Trigger: GAGGAAGAAGAAGAGGCAGCAGGCTAGGAAGACTGC...GCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp GCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCAGTCTTCCTAGCCTaGTGCCTCTTCTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: AGKAFLFFPRGVLGLGLFAVFLA*CLFFFL
Trigger: GAGGAAGAAGAAGAGGCAGCAGGCTAGGAAGACTGC...AAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAATTTCGCCCTCCTCTTaGCCCCCGGGGGAGACTACT +
Preference number: 4 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKISPSS*PPGETT
Trigger: AGTAGTCTCCCCCGGGGGCCAAGAGGAGGGCGAAAT...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTAAGGCGGCCAGGATCTaGGTATTTCCAAAAAGCTCT +
Preference number: 4 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCKAARI*VFPKSS
Trigger: AGAGCTTTTTGGAAATACTCAGATCCTGGCCGCCTT...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCTCAAGTCAGACCCACTaGTTTGGAAAGCCAACAGTA +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGSSQTH*FGKPTV
Trigger: TACTGTTGGCTTTCCAAATCAGTGGGTCTGACTTGA...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCCCAATTCACAACCAGTaGAAGGCCACGTACCTAAAA +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGPIHNQ*KATYLK
Trigger: TTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGG...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCTGTTCTTTATCCAGCTaGTTCCGTGCTGTCGGGGCC +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLCSLSS*FRAVGA
Trigger: GGCCCCGACAGCACGGAAGCAGCTGGATAAAGAACA...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp GAGGATCACTTGAGTCAGGTCAGGGAGGTTGAGGTTGCAGTGAACACAGATCTCGGAAGAAATCAAAACTaGTCAGAAGGCGGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: EDHLSQVREVEVAVNTDLGRNQN*SEGGAW
Trigger: CCAAGCTCCGCCTTCTGAGCAGTTTTGATTTCTTCC...GAGATCTGTGTTCACTGCAACCTCAACCTCCCTGACCTGACTCAAGTGATCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000572090.5
CDS-3UTR GCA 90 bp AGAAGGTTACAAAGGCGGCCAGGATCTGAGTATTTCCAAAAAGCTCTGGAGGCAGTCTTCCTAGCCTGCTaGCTCTTCTTCTTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: RRLQRRPGSEYFQKALEAVFLAC*LFFFLS
Trigger: GGAGAGGAAGAAGAAGAGGCAGCAGGCTAGGAAGAC...TGCCTCCAGAGCTTTTTGGAAATACTCAGATCCTGGCCGCCTTTGTAACCTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTGCAGTCTTCCTAGCCTaGTGCCTCTTCTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFAVFLA*CLFFFL
Trigger: GAGGAAGAAGAAGAGGCAGCAGGCTAGGAAGACTGC...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR GCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACGACTTGCTGGCTCCTTaGTCTCCCAGGATCGACTGT +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDDLLAP*SPRIDC
Trigger: ACAGTCGATCCTGGGAGAGCAAGGAGCCAGCAAGTC...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTAGGTGCCTCCCACCATaGCTGGCTAGTTTTTGTATT +
Preference number: 4 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCRCLPP*LASFCI
Trigger: AATACAAAAACTAGCCAGGCATGGTGGGAGGCACCT...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCCAAACGAGGAAAAGATaGGAAGTGCAGCCGATTTCT +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGQTRKR*EVQPIS
Trigger: AGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTG...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAAGCCTCGTGAGGAGCTaGGAGCACAGATGCATGCCA +
Preference number: 4 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKSLVRS*EHRCMP
Trigger: TGGCATGCATCTGTGCTCCCAGCTCCTCACGAGGCT...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGCAGCGAGACCCTCACTaGGCCACTCTGGGAATGACT +
Preference number: 4 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKQRDPH*ATLGMT
Trigger: AGTCATTCCCAGAGTGGCCCAGTGAGGGTCTCGCTG...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCCATGTAAGCCAGGCTaGTCTCAGAACTCCTGGCCT +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDPCKPG*SQNSWP
Trigger: AGGCCAGGAGTTCTGAGACCAGCCTGGCTTACATGG...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CAA 72 bp CATAATCTAAGCCCAGGGCATAAAATCCCTCGTGGCTaGGATAAAATCCAGGGCCTGTGGCTCTGGAATGTC +
Preference number: 4 (lower is better)
Translates to: HNLSPGHKIPRG*DKIQGLWLWNV
Trigger: GACATTCCAGAGCCACAGGCCCTGGATTTTATCCAAGCCACGAGGGATTTTATGCCCTGGGCTTAGATTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GGTCTCAGATGCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTCTTCATCCCAATTGCTaGCAAACGAGGAAAAGATGG +
Preference number: 4 (lower is better)
Translates to: GLRCWQSLSFLPTRCAGILHPNC*QTRKRW
Trigger: CCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAG...AATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGCATCTGAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR TCA 90 bp CACAGCCTCCACCATCCCGATGGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCTTTTTCTCAATCCTTTaGCTCCACTGGACTTTGTCA +
Preference number: 4 (lower is better)
Translates to: HSLHHPDGLLVLLLSQTVFFSIL*LHWTLS
Trigger: TGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAA...GACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCATTAAATCTCCCTGGTaGAGAGGATGGATTCCAGAA +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGIKSPW*RGWIPE
Trigger: TTCTGGAATCCATCCTCTTCACCAGGGAGATTTAAT...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGTGTTCTTTATCCAGCTaGTTCCGTGCTGTCGGGGCC +
Preference number: 4 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKCSLSS*FRAVGA
Trigger: GGCCCCGACAGCACGGAAGCAGCTGGATAAAGAACA...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GAGGATCACTTGAGTCAGGTCAGGGAGGTTGAGGTTGCAGTGAACACAGATCTCCAAGAGAGCGTCCACTaGCTTTCTAACCTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: EDHLSQVREVEVAVNTDLQESVH*LSNLFF
Trigger: AAAGAACAGGTTAGAAAGGCAGTGGACGCTCTCTTG...GAGATCTGTGTTCACTGCAACCTCAACCTCCCTGACCTGACTCAAGTGATCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000572090.5
CDS-3UTR GCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAAGCTGGGAGCACAGATaGATGCCACCATGCCACACT +
Preference number: 4 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKSWEHR*MPPCHT
Trigger: AGTGTGGCATGGTGGCATGCATCTGTGCTCCCAGCT...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp TTACTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAATTGCCCAGGCTGGAGTaGAGGATCGTGATCATGGCC +
Preference number: 4 (lower is better)
Translates to: LLLRMHTNSQPVKGHVPKLPRLE*RIVIMA
Trigger: GGCCATGATCACGATCCTGCACTCCAGCCTGGGCAA...TTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GGTCTCAGATGCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTTATTGGTACCAGCTGTaGGATTTCGTCTTCGGATTC +
Preference number: 4 (lower is better)
Translates to: GLRCWQSLSFLPTRCAGIYWYQL*DFVFGF
Trigger: GAATCCGAAGACGAAATCCCACAGCTGGTACCAATA...AATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGCATCTGAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp GCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAGACTATTGGTACCAGCTGTaGGATTTCGTCTTCGGATTC +
Preference number: 4 (lower is better)
Translates to: AFLFFPRGVLGLGLFAGDYWYQL*DFVFGF
Trigger: GAATCCGAAGACGAAATCCCACAGCTGGTACCAATA...GTCTCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGGCAATCCTCTCACCTTaGCTACCTAAAGTGCTGAAC +
Preference number: 4 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWAILSP*LPKVLN
Trigger: GTTCAGCACTTTAGGTAGCCAAGGTGAGAGGATTGC...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGCGAAAAGCTGAGTGTTaGGAGAAGCTGAGGCAGGGC +
Preference number: 4 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKRKAEC*EKLRQG
Trigger: GCCCTGCCTCAGCTTCTCCCAACACTCAGCTTTTCG...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGATGCAAAAACAGGATTaGCATGCTGCCTCATGCCTG +
Preference number: 4 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWMQKQD*HAASCL
Trigger: CAGGCATGAGGCAGCATGCCAATCCTGTTTTTGCAT...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTATGCAGAGAACAGACTaGCACGATTACATATGTGGG +
Preference number: 4 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCMQRTD*HDYICG
Trigger: CCCACATATGTAATCGTGCCAGTCTGTTCTCTGCAT...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCTATCACCCTCATACTTaGCCCACGAGAACATCATAT +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGYHPHT*PTRTSY
Trigger: ATATGATGTTCTCGTGGGCCAAGTATGAGGGTGATA...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CAA 72 bp CCTACTTCTCTCTCAAACTGTCTTTTTCTCAATCCTTaGACTCCACTGGACTTTGTCACCCCCACGACCTGG +
Preference number: 4 (lower is better)
Translates to: PTSLSNCLFLNP*TPLDFVTPTTW
Trigger: CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTTGAGAGAGAAGTAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAGACATCTTTACTAAGAACTaGTGCAGTCTTCCTAGCCTG +
Preference number: 4 (lower is better)
Translates to: AFLFFPRGVLGLGLFAGDIFTKN*CSLPSL
Trigger: CAGGCTAGGAAGACTGCATCAGTTCTTAGTAAAGAT...GTCTCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR TCA 90 bp GAGGATCACTTGAGTCAGGTCAGGGAGGTTGAGGTTGCAGTGAACACAGATCTCAGATCTCGTCTAATCTaGCCCTCAGTTCTTTACTTG +
Preference number: 4 (lower is better)
Translates to: EDHLSQVREVEVAVNTDLRSRLI*PSVLYL
Trigger: CAAGTAAAGAACTGAGGGTCAGATTAGACGAGATCT...GAGATCTGTGTTCACTGCAACCTCAACCTCCCTGACCTGACTCAAGTGATCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000572090.5
CDS-3UTR TCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAATTGAGCCCAGGAAATTaGGGCTGGAGCTGTGATGAC +
Preference number: 4 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKLSPGN*GWSCDD
Trigger: GTCATCACAGCTCCAGCCTCAATTTCCTGGGCTCAA...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTGGAAGAAATCAAAACTaGTCAGAAGGCGGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFGRNQN*SEGGAW
Trigger: CCAAGCTCCGCCTTCTGAGCAGTTTTGATTTCTTCC...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000396503.7
ENST00000570767.5
CDS-3UTR GCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCACTTACTACTACGGATaGATACCAATTCACAACCAG +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGTYYYG*IPIHNQ
Trigger: CTGGTTGTGAATTGGTATGCATCCGTAGTAGTAAGT...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp TGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCCAAACGAGGAAAAGATaGGAAGTGCAGCCGATTTCT +
Preference number: 4 (lower is better)
Translates to: WQSLSFLPTRCAGIRTLCQTRKR*EVQPIS
Trigger: AGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTG...GCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACACCCCTTGTGGTCTTTaGAACACCAAGCTCTGTGCT +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDTPCGL*NTKLCA
Trigger: AGCACAGAGCTTGGTGTTCCAAAGACCACAAGGGGT...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACTCTGCCAGCCTTGGCTaGGATTACAGATGTGAGCCA +
Preference number: 4 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHSASLG*DYRCEP
Trigger: TGGCTCACATCTGTAATCCCAGCCAAGGCTGGCAGA...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGGGGGGAGACTACTGTTaGCTCCTAGCACTATCAGCT +
Preference number: 4 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKGGDYC*LLALSA
Trigger: AGCTGATAGTGCTAGGAGCCAACAGTAGTCTCCCCC...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
48% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACGAGGCAAGGTCAATCTaGCCCTCAGTTCTTTACTTG +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDEARSI*PSVLYL
Trigger: CAAGTAAAGAACTGAGGGTCAGATTGACCTTGCCTC...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCATTTGCATTCCAACGTaGCCAATACGTATAGCACTG +
Preference number: 4 (lower is better)
Translates to: WQSLSFLPTRCAGIRTLCICIPT*PIRIAL
Trigger: CAGTGCTATACGTATTGGTCACGTTGGAATGCAAAT...GCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396503.7
ENST00000573029.1
CDS-3UTR TCA 90 bp AAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGACTTCATCCCAATTGCTaGCAAACGAGGAAAAGATGG +
Preference number: 4 (lower is better)
Translates to: KAFLFFPRGVLGLGLFAGLHPNC*QTRKRW
Trigger: CCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAG...TCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR TCA 90 bp TGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCATCTTTACTAAGAACTaGTGCAGTCTTCCTAGCCTG +
Preference number: 4 (lower is better)
Translates to: WQSLSFLPTRCAGIRTLCIFTKN*CSLPSL
Trigger: CAGGCTAGGAAGACTGCATCAGTTCTTAGTAAAGAT...GCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR TCA 90 bp CTGTTTCTCCTAAATTCCGTAGCCGACTCTCATACAGCGAGACCCTCACTGGGCTGCAAGATCTTGAACTaGCTAGATGATAGGATTACA +
Preference number: 4 (lower is better)
Translates to: LFLLNSVADSHTARPSLGCKILN*LDDRIT
Trigger: TGTAATCCTATCATCTAGTCAGTTCAAGATCTTGCA...GCCCAGTGAGGGTCTCGCTGTATGAGAGTCGGCTACGGAATTTAGGAGAAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCGGAAGAAATCAAAACTaGTCAGAAGGCGGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLGRNQN*SEGGAW
Trigger: CCAAGCTCCGCCTTCTGAGCAGTTTTGATTTCTTCC...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000396503.7
ENST00000570767.5
CDS-3UTR GCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTGACCATCTCCCCCACTaGCCGCTACTCTCGCTACCA +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSDHLPH*PLLSLP
Trigger: TGGTAGCGAGAGTAGCGGGCAGTGGGGGAGATGGTC...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GAGGATCACTTGAGTCAGGTCAGGGAGGTTGAGGTTGCAGTGAACACAGATCTCTCAGAAGGCGGAGCTTaGCTTCATAGGATTTATATT +
Preference number: 4 (lower is better)
Translates to: EDHLSQVREVEVAVNTDLSEGGA*LHRIYI
Trigger: AATATAAATCCTATGAAGCCAAGCTCCGCCTTCTGA...GAGATCTGTGTTCACTGCAACCTCAACCTCCCTGACCTGACTCAAGTGATCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000572090.5
CDS-3UTR CCA 90 bp AAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGACAAACGAGGAAAAGATaGGAAGTGCAGCCGATTTCT +
Preference number: 4 (lower is better)
Translates to: KAFLFFPRGVLGLGLFAGQTRKR*EVQPIS
Trigger: AGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTG...TCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTTATTGGTACCAGCTGTaGGATTTCGTCTTCGGATTC +
Preference number: 4 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFYWYQL*DFVFGF
Trigger: GAATCCGAAGACGAAATCCCACAGCTGGTACCAATA...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR TCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCTCTGATCGAATACTATaGGGCAAGGTCAATCTGACC +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLSDRIL*GKVNLT
Trigger: GGTCAGATTGACCTTGCCTCATAGTATTCGATCAGA...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000570767.5
CDS-3UTR TCA 90 bp GCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTTGGAGGGAGATAATCTaGGAAACGGTTTTAATTCCA +
Preference number: 4 (lower is better)
Translates to: AGKAFLFFPRGVLGLGLFWREII*ETVLIP
Trigger: TGGAATTAAAACCGTTTCTCAGATTATCTCCCTCCA...AAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS-3UTR TCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCCTTCATCCCAATTGCTaGCAAACGAGGAAAAGATGG +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLLHPNC*QTRKRW
Trigger: CCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAG...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
ENST00000573618.5
CDS-3UTR TCA 90 bp AAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGATCTGATCGAATACTATaGGGCAAGGTCCTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: KAFLFFPRGVLGLGLFAGSDRIL*GKVLFF
Trigger: AAAGAACAGGACCTTGCCTCATAGTATTCGATCAGA...TCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS-3UTR TCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCAGGTTTCCTTCCAGTTaGATCACTGACTTTAGGTCG +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLRFPSS*ITDFRS
Trigger: CGACCTAAAGTCAGTGATTCAACTGGAAGGAAACCT...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS-3UTR TCA 90 bp AGAAGGTTACAAAGGCGGCCAGGATCTGAGTATTTCCAAAAAGCTCTGGAGGCACACCCACATTATCTTTaGAAGCAGTTGAGTCTTTGG +
Preference number: 4 (lower is better)
Translates to: RRLQRRPGSEYFQKALEAHPHYL*KQLSLW
Trigger: CCAAAGACTCAACTGCTTTCAAAGATAATGTGGGTG...TGCCTCCAGAGCTTTTTGGAAATACTCAGATCCTGGCCGCCTTTGTAACCTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACTTTGAGACTGAGTCTTaGTCTGTCATCAGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHFETES*SVIRLE
Trigger: CTCCAGCCTGATGACAGAGCAAGACTCAGTCTCAAA...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GACAATTGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTTGGAGTTGTCATGGCCTCAAGTGATCTaGCAGCCTTGGCTGGGATTA +
Preference number: 4 (lower is better)
Translates to: DNCGNVSNLLFQDSLELSWPQVI*QPWLGL
Trigger: TAATCCCAGCCAAGGCTGGCAGATCACTTGAGGCCA...TGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACAATTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCCAAACGAGGAAAAGATaGGAAGTGCAGCCGATTTCT +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLQTRKR*EVQPIS
Trigger: AGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTG...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACTATTGGTACCAGCTGTaGGATTTCGTCTTCGGATTC +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDYWYQL*DFVFGF
Trigger: GAATCCGAAGACGAAATCCCACAGCTGGTACCAATA...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTAATGTAAAAGAGTCTTaGAATATGTCCAGGGTCAAG +
Preference number: 4 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCNVKES*NMSRVK
Trigger: CTTGACCCTGGACATATTCCAAGACTCTTTTACATT...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACTCTGATCGAATACTATaGGGCAAGGTCAATCTGACC +
Preference number: 4 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHSDRIL*GKVNLT
Trigger: GGTCAGATTGACCTTGCCTCATAGTATTCGATCAGA...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCATTTGCATTCCAACGTaGCCAATACGTATAGCACTG +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLICIPT*PIRIAL
Trigger: CAGTGCTATACGTATTGGTCACGTTGGAATGCAAAT...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
CDS-3UTR TCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAACTTCATCCCAATTGCTaGCAAACGAGGAAAAGATGG +
Preference number: 4 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKLHPNC*QTRKRW
Trigger: CCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAG...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCATCTTTACTAAGAACTaGTGCAGTCTTCCTAGCCTG +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLIFTKN*CSLPSL
Trigger: CAGGCTAGGAAGACTGCATCAGTTCTTAGTAAAGAT...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR TCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACATCTTTACTAAGAACTaGTGCAGTCTTCCTAGCCTG +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDIFTKN*CSLPSL
Trigger: CAGGCTAGGAAGACTGCATCAGTTCTTAGTAAAGAT...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGAGGTTTCCTTCCAGTTaGATCACTGACTTTAGGTCG +
Preference number: 4 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKRFPSS*ITDFRS
Trigger: CGACCTAAAGTCAGTGATTCAACTGGAAGGAAACCT...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACGGGCCACTCTGGGAATaGCTACAAATGAATATGATG +
Preference number: 4 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHGPLWE*LQMNMM
Trigger: CATCATATTCATTTGTAGTCATTCCCAGAGTGGCCC...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACTGGATGCTAATCCAGTaGCTCATAAGCTTAGACCAA +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDWMLIQ*LISLDQ
Trigger: TTGGTCTAAGCTTATGAGTCACTGGATTAGCATCCA...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTGTGGGAAGATCGCCTTaGGCCCAGGAAATTGAGGCT +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSVGRSP*AQEIEA
Trigger: AGCCTCAATTTCCTGGGCTCAAGGCGATCTTCCCAC...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAACAAGAGAGCGTCCACTaGCTTTCTAACCTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKQESVH*LSNLFF
Trigger: AAAGAACAGGTTAGAAAGGCAGTGGACGCTCTCTTG...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp TTACTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAACCCAGCGTTCCAAAGTaGTGGGATTATGTTGCGAAA +
Preference number: 4 (lower is better)
Translates to: LLLRMHTNSQPVKGHVPKPSVPK*WDYVAK
Trigger: TTTCGCAACATAATCCCAGCACTTTGGAACGCTGGG...TTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTTCAGAAGGCGGAGCTTaGCTTCATAGGATTTATATT +
Preference number: 4 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFSEGGA*LHRIYI
Trigger: AATATAAATCCTATGAAGCCAAGCTCCGCCTTCTGA...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000396503.7
ENST00000570767.5
CDS-3UTR CCA 90 bp GCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAGACTACTTTTTCATTAGCTaGAGTCTTCTTTCCTATTGG +
Preference number: 4 (lower is better)
Translates to: AFLFFPRGVLGLGLFAGDYFFIS*SLLSYW
Trigger: CCAATAGGAAAGAAGACTCCAGCTAATGAAAAAGTA...GTCTCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp GCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGAGACTTCTTTCCTGTaGCATGTTTTTGAATCTCTA +
Preference number: 4 (lower is better)
Translates to: AGKAFLFFPRGVLGLGLFETSFL*HVFESL
Trigger: TAGAGATTCAAAAACATGCCACAGGAAAGAAGTCTC...AAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGCCTAGCACTATCAGCTaGCTAGGAATGTGTATGCAA +
Preference number: 4 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKPSTIS*LGMCMQ
Trigger: TTGCATACACATTCCTAGCCAGCTGATAGTGCTAGG...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACATTTGCATTCCAACGTaGCCAATACGTATAGCACTG +
Preference number: 4 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHICIPT*PIRIAL
Trigger: CAGTGCTATACGTATTGGTCACGTTGGAATGCAAAT...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TTACTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAATGATGGAGTCCATGTaGATAATGGTTGAGCAGGTG +
Preference number: 4 (lower is better)
Translates to: LLLRMHTNSQPVKGHVPKMMESM*IMVEQV
Trigger: CACCTGCTCAACCATTATTCACATGGACTCCATCAT...TTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACGCAGGGCTTGCATTCTaGCATAATGTAAAAGAGTCT +
Preference number: 4 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHAGLAF*HNVKES
Trigger: AGACTCTTTTACATTATGTCAGAATGCAAGCCCTGC...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GACAATTGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTTGGAGTTGTCAGGAAGAAATCAAAACTaGTCAGAAGGCGGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: DNCGNVSNLLFQDSLELSGRNQN*SEGGAW
Trigger: CCAAGCTCCGCCTTCTGAGCAGTTTTGATTTCTTCC...TGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACAATTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GACAATTGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTTGGAGTTGTCAGTGCTGGGATTATGTTaGGAAAAGCTGAGTGTTGGG +
Preference number: 4 (lower is better)
Translates to: DNCGNVSNLLFQDSLELSVLGLC*EKLSVG
Trigger: CCCAACACTCAGCTTTTCGCAACATAATCCCAGCAC...TGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACAATTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCTCAGAAGGCGGAGCTTaGCTTCATAGGATTTATATT +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLSEGGA*LHRIYI
Trigger: AATATAAATCCTATGAAGCCAAGCTCCGCCTTCTGA...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396503.7
ENST00000570767.5
CDS-3UTR CCA 90 bp GCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTTACTTTTTCATTAGCTaGAGTCTTCTTTCCTATTGG +
Preference number: 4 (lower is better)
Translates to: AGKAFLFFPRGVLGLGLFYFFIS*SLLSYW
Trigger: CCAATAGGAAAGAAGACTCCAGCTAATGAAAAAGTA...AAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTGAGACTTCTTTCCTGTaGCATGTTTTTGAATCTCTA +
Preference number: 4 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFETSFL*HVFESL
Trigger: TAGAGATTCAAAAACATGCCACAGGAAAGAAGTCTC...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp AGAAGGTTACAAAGGCGGCCAGGATCTGAGTATTTCCAAAAAGCTCTGGAGGCAGAGACTTCTTTCCTGTaGCATGTTTTTGAATCTCTA +
Preference number: 4 (lower is better)
Translates to: RRLQRRPGSEYFQKALEAETSFL*HVFESL
Trigger: TAGAGATTCAAAAACATGCCACAGGAAAGAAGTCTC...TGCCTCCAGAGCTTTTTGGAAATACTCAGATCCTGGCCGCCTTTGTAACCTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGTCAGACCCACTGATTTaGAAAGCCAACAGTATACTC +
Preference number: 4 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKSDPLI*KANSIL
Trigger: GAGTATACTGTTGGCTTTCCAAATCAGTGGGTCTGA...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACGCACGATTACATATGTaGGTTTGTCCTACACAAACC +
Preference number: 4 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHARLHM*VCPTQT
Trigger: GGTTTGTGTAGGACAAACCCACATATGTAATCGTGC...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGTGTATGCAACACTTCTaGAGCCTTGGAAACATAGTA +
Preference number: 4 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKCMQHF*SLGNIV
Trigger: TACTATGTTTCCAAGGCTTCAGAAGTGTTGCATACA...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACAGGTGTCCACCACCATaGCCAATTAATTTTTGTATT +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDRCPPP*PINFCI
Trigger: AATACAAAAATTAATTGGGCATGGTGGTGGACACCT...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAATCAGAAGGCGGAGCTTaGCTTCATAGGATTTATATT +
Preference number: 4 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKSEGGA*LHRIYI
Trigger: AATATAAATCCTATGAAGCCAAGCTCCGCCTTCTGA...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCGAGACTTCTTTCCTGTaGCATGTTTTTGAATCTCTA +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLETSFL*HVFESL
Trigger: TAGAGATTCAAAAACATGCCACAGGAAAGAAGTCTC...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp GACAATTGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTTGGAGTTGTCAAGCGTTCCAAAGTGCTaGGATTATGTTGCGAAAAGC +
Preference number: 4 (lower is better)
Translates to: DNCGNVSNLLFQDSLELSSVPKC*DYVAKS
Trigger: GCTTTTCGCAACATAATCCCAGCACTTTGGAACGCT...TGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACAATTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CAA 72 bp AAACCCAGTGCCAACAATGAAATATCACCCTCATACTaGGCCCACGAGAACATCATATACCATAGTAGAGAT +
Preference number: 4 (lower is better)
Translates to: KPSANNEISPSY*AHENIIYHSRD
Trigger: ATCTCTACTATGGTATATGATGTTCTCGTGGGCCAAGTATGAGGGTGATATTTCATTGTTGGCACTGGGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGAAACCACACAGCTATTaGTGGAAAATTATGTCATGC +
Preference number: 4 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKKPHSY*WKIMSC
Trigger: GCATGACATAATTTTCCAGCAATAGCTGTGTGGTTT...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp TTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTCTCTACTTTTTCATTAGCTaGAGTCTTCTTTCCTATTGG +
Preference number: 4 (lower is better)
Translates to: FIPIADKRGKDGKCSRFLYFFIS*SLLSYW
Trigger: CCAATAGGAAAGAAGACTCCAGCTAATGAAAAAGTA...GAGAAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CCA 90 bp AAACTGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACTACTTTTTCATTAGCTaGAGTCTTCTTTCCTATTGG +
Preference number: 4 (lower is better)
Translates to: KLSFSQSFDSTGLCHPHDYFFIS*SLLSYW
Trigger: CCAATAGGAAAGAAGACTCCAGCTAATGAAAAAGTA...GTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTATCCCGATGGTCTGCTaGTCCTACTTCTCTCTCAAA +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSIPMVC*SYFSLK
Trigger: TTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGAT...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTCAAATCCATATGGACTaGGGAATAAGGAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSQIHMD*GIRRKR
Trigger: CCTCTTCCTCCTTATTCCTCAGTCCATATGGATTTG...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTACTGCAGTGAATCTGTaGACTTACTACTACGGATGC +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSTAVNL*TYYYGC
Trigger: GCATCCGTAGTAGTAAGTTCACAGATTCACTGCAGT...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GACAATTGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTTGGAGTTGTCAAGAACATTCCTGCACTaGAGTGAATCTGTGAACTTA +
Preference number: 4 (lower is better)
Translates to: DNCGNVSNLLFQDSLELSRTFLH*SESVNL
Trigger: TAAGTTCACAGATTCACTGCAGTGCAGGAATGTTCT...TGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACAATTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR GCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTGTTGAGTCTTTGGCATaGAAGAACATTCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSVESLA*KNIPAL
Trigger: CAGTGCAGGAATGTTCTTGCATGCCAAAGACTCAAC...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTCATGTTCAACAAGACTaGACTACGGAGCAAAGAATC +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSHVQQD*TTEQRI
Trigger: GATTCTTTGCTCCGTAGTTCAGTCTTGTTGAACATG...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GACAATTGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTTGGAGTTGTCATCTTGCTCAATAAATTaGAGCCAGCTTTTTCAACAG +
Preference number: 4 (lower is better)
Translates to: DNCGNVSNLLFQDSLELSSCSIN*SQLFQQ
Trigger: CTGTTGAAAAAGCTGGCTTCAATTTATTGAGCAAGA...TGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACAATTGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR TCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTACCCAGTGCCAACAATaGAATATCACCCTCATACTT +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSTQCQQ*NITLIL
Trigger: AAGTATGAGGGTGATATTTCATTGTTGGCACTGGGT...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTAAGCAGTTGAGTCTTTaGCATGCAAGAACATTCCTG +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSKQLSL*HARTFL
Trigger: CAGGAATGTTCTTGCATGCCAAAGACTCAACTGCTT...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CAA 72 bp TGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTaGGAGTTGTCATACATAAGCAAATCCATATGGACT +
Preference number: 4 (lower is better)
Translates to: CGNVSNLLFQDS*ELSYISKSIWT
Trigger: AGTCCATATGGATTTGCTTATGTATGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CCA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTCCATCAGATCTCATTTaGTTCATTAAATCTCCCTGG +
Preference number: 4 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSPSDLI*FIKSPW
Trigger: CCAGGGAGATTTAATGAACCAAATGAGATCTGATGG...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
3UTR CAA 72 bp AAGATAGGTTTTATGTTAGATGATAACACCAGCATCTaGCTCAATAAATTGAAGCCAGCTTTTTCAACAGAG +
Preference number: 4 (lower is better)
Translates to: KIGFMLDDNTSI*LNKLKPAFSTE
Trigger: CTCTGTTGAAAAAGCTGGCTTCAATTTATTGAGCAAGATGCTGGTGTTATCATCTAACATAAAACCTATCTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS GCA 90 bp TGCTGTCGGGGCCGCTGGAGTCGAGGTGGAGGTTCCAGTAGCGGCTaGAGAAGACAGCGAGGCCGAGGCCGAATCCTCCATCTTGTTTCC +
Preference number: 5 (lower is better)
Translates to: CCRGRWSRGGGSSSG*RRQRGRGRILHLVS
Trigger: GGAAACAAGATGGAGGATTCGGCCTCGGCCTCGCTGTCTTCTGCAGCCGCTACTGGAACCTCCACCTCGACTCCAGCGGCCCCGACAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355674.9
ENST00000396503.7
ENST00000570767.5
ENST00000571133.6
CDS TCA 90 bp AGACAGCGAGGCCGAGGCCGAATCCTCCATCTTGTTTCCACCTCGTaGAGAGGCGCGTGTGCAACCCCACTGCTGGCTTCTGGTGCGCAC +
Preference number: 5 (lower is better)
Translates to: RQRGRGRILHLVSTS*RGACATPLLASGAH
Trigger: GTGCGCACCAGAAGCCAGCAGTGGGGTTGCACACGCGCCTCTTCACGAGGTGGAAACAAGATGGAGGATTCGGCCTCGGCCTCGCTGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS-3UTR CAA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGGATTTCGCCCTCCTCTaGGCCCCCGGGGGAGACTAC +
Preference number: 5 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWDFALL*APGGDY
Trigger: GTAGTCTCCCCCGGGGGCCAAGAGGAGGGCGAAATC...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGCGTGATCATGGCCCATaGCAGCCTCTACCTCCCGGG +
Preference number: 5 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKRDHGP*QPLPPG
Trigger: CCCGGGAGGTAGAGGCTGCAATGGGCCATGATCACG...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp AGAAGGTTACAAAGGCGGCCAGGATCTGAGTATTTCCAAAAAGCTCTGGAGGCACGGGGGAGACTACTGTaGGCTCCTAGCACTATCAGC +
Preference number: 5 (lower is better)
Translates to: RRLQRRPGSEYFQKALEARGRLL*APSTIS
Trigger: GCTGATAGTGCTAGGAGCCAACAGTAGTCTCCCCCG...TGCCTCCAGAGCTTTTTGGAAATACTCAGATCCTGGCCGCCTTTGTAACCTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS TCA 90 bp GGCGGCCAGGATCTGAGTATTTCCAAAAAGCTCTGGAGGCAGCATTaGGGTTTCCTTCCAGTTGAATCACTGACTTTAGGTCGACTGGGG +
Preference number: 5 (lower is better)
Translates to: GGQDLSISKKLWRQH*GFLPVESLTLGRLG
Trigger: CCCCAGTCGACCTAAAGTCAGTGATTCAACTGGAAGGAAACCTCAATGCTGCCTCCAGAGCTTTTTGGAAATACTCAGATCCTGGCCGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp AAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAGCCGAATCCTCCATCTaGTTTCCACCTCGTGAAGAG +
Preference number: 5 (lower is better)
Translates to: KAFLFFPRGVLGLGLFAGAESSI*FPPREE
Trigger: CTCTTCACGAGGTGGAAACAAGATGGAGGATTCGGC...TCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS-3UTR CAA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTGCCGAATCCTCCATCTaGTTTCCACCTCGTGAAGAG +
Preference number: 5 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFAESSI*FPPREE
Trigger: CTCTTCACGAGGTGGAAACAAGATGGAGGATTCGGC...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396503.7
ENST00000570767.5
CDS-3UTR CAA 90 bp AGAAGGTTACAAAGGCGGCCAGGATCTGAGTATTTCCAAAAAGCTCTGGAGGCAGCCGAATCCTCCATCTaGTTTCCACCTCGTGAAGAG +
Preference number: 5 (lower is better)
Translates to: RRLQRRPGSEYFQKALEAAESSI*FPPREE
Trigger: CTCTTCACGAGGTGGAAACAAGATGGAGGATTCGGC...TGCCTCCAGAGCTTTTTGGAAATACTCAGATCCTGGCCGCCTTTGTAACCTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAAGACTTGCTGGCTCCTaGCTCTCCCAGGATCGACTG +
Preference number: 5 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKRLAGS*LSQDRL
Trigger: CAGTCGATCCTGGGAGAGCAAGGAGCCAGCAAGTCT...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp GCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAGACGAGTCTTCTTTCCTATaGGTACCAGCTGTGGGATTT +
Preference number: 5 (lower is better)
Translates to: AFLFFPRGVLGLGLFAGDESSFL*VPAVGF
Trigger: AAATCCCACAGCTGGTACCAATAGGAAAGAAGACTC...GTCTCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CAA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACACCTCTTGCGCTCACTaGATCCTTCCACCTCAGCCT +
Preference number: 5 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHTSCAH*ILPPQP
Trigger: AGGCTGAGGTGGAAGGATCAAGTGAGCGCAAGAGGT...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGAGTGCTGGGATTATGTaGCGAAAAGCTGAGTGTTGG +
Preference number: 5 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWSAGIM*RKAECW
Trigger: CCAACACTCAGCTTTTCGCAACATAATCCCAGCACT...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp GCTGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGAGTCTTCTTTCCTATaGGTACCAGCTGTGGGATTT +
Preference number: 5 (lower is better)
Translates to: AGKAFLFFPRGVLGLGLFESSFL*VPAVGF
Trigger: AAATCCCACAGCTGGTACCAATAGGAAAGAAGACTC...AAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CAA 90 bp TGGCAAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCGAGTCTTCTTTCCTATaGGTACCAGCTGTGGGATTT +
Preference number: 5 (lower is better)
Translates to: WQSLSFLPTRCAGIRTLCESSFL*VPAVGF
Trigger: AAATCCCACAGCTGGTACCAATAGGAAAGAAGACTC...GCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000573029.1
ENST00000573618.5
CDS-3UTR CAA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAAACCCCTTGTGGTCTTaGGAACACCAAGCTCTGTGC +
Preference number: 5 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKNPLWS*EHQALC
Trigger: GCACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTT...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAAGTGATCTGCCAGCCTaGGCTGGGATTACAGATGTG +
Preference number: 5 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKSDLPA*AGITDV
Trigger: CACATCTGTAATCCCAGCCAAGGCTGGCAGATCACT...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp CACAGCCTCCACCATCCCGATGGTCTGCTGGTCCTACTTCTCTCTCAAACTGTCAAAACCACACAGCTATaGCTGGAAAATTATGTCATG +
Preference number: 5 (lower is better)
Translates to: HSLHHPDGLLVLLLSQTVKTTQL*LENYVM
Trigger: CATGACATAATTTTCCAGCAATAGCTGTGTGGTTTT...GACAGTTTGAGAGAGAAGTAGGACCAGCAGACCATCGGGATGGTGGAGGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGCTCTTCCAAGATTCCTaGGAGTTGTCATACATAAGC +
Preference number: 5 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWLFQDS*ELSYIS
Trigger: GCTTATGTATGACAACTCCAAGGAATCTTGGAAGAG...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGAAAGCAGTTGAGTCTTaGGCATGCAAGAACATTCCT +
Preference number: 5 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWKAVES*ACKNIP
Trigger: AGGAATGTTCTTGCATGCCAAAGACTCAACTGCTTT...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp GTTTACTGCCTCAGAATATACTTGACAATTGTGGAAACGTTAGCAATCTACTCTCCCCACGACCTGGTGTaGGGTCTGGTCACCCTAACA +
Preference number: 5 (lower is better)
Translates to: VYCLRIYLTIVETLAIYSPHDLV*GLVTLT
Trigger: TGTTAGGGTGACCAGACCCAACACCAGGTCGTGGGG...AGAGTAGATTGCTAACGTTTCCACAATTGTCAAGTATATTCTGAGGCAGTAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTGATAACACCAGCATCTaGCTCAATAAATTGAAGCCA +
Preference number: 5 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCDNTSI*LNKLKP
Trigger: TGGCTTCAATTTATTGAGCAAGATGCTGGTGTTATC...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp GTCCAGGGTCAAGGGTCTAAAACCCCTTGTGGTCTTTGGAACACCAAGCTCTGTTGCCTCAGAATATACTaGACAATTGTGGAAACGTTA +
Preference number: 5 (lower is better)
Translates to: VQGQGSKTPCGLWNTKLCCLRIY*TIVETL
Trigger: TAACGTTTCCACAATTGTCAAGTATATTCTGAGGCA...ACAGAGCTTGGTGTTCCAAAGACCACAAGGGGTTTTAGACCCTTGACCCTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAATGCAAAAACAGGATaGGCATGCTGCCTCATGCCT +
Preference number: 5 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHNAKTG*ACCLMP
Trigger: AGGCATGAGGCAGCATGCCAATCCTGTTTTTGCATT...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp TGTCTTTTTCTCAATCCTTTGACTCCACTGGACTTTGTCACCCCCACGACCTGGAAGAATCACACAGTGTaGCAAGATCTTGAACTGACT +
Preference number: 5 (lower is better)
Translates to: CLFLNPLTPLDFVTPTTWKNHTV*QDLELT
Trigger: AGTCAGTTCAAGATCTTGCAACACTGTGTGATTCTT...CCAGGTCGTGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp AAAGCCTTTCTTTTCTTCCCACGAGGTGTGCTGGGATTAGGACTCTTTGCTGGAAATGATGTGCTCAATTaGCATTCCAACGTGACCAAT +
Preference number: 5 (lower is better)
Translates to: KAFLFFPRGVLGLGLFAGNDVLN*HSNVTN
Trigger: ATTGGTCACGTTGGAATGCAAATTGAGCACATCATT...TCCAGCAAAGAGTCCTAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396503.7
ENST00000573029.1
CDS-3UTR CAA 90 bp GGCTTCATCCCAATTGCTGACAAACGAGGAAAAGATGGGAAGTGCAGCCGATTTAATGATGTGCTCAATTaGCATTCCAACGTGACCAAT +
Preference number: 5 (lower is better)
Translates to: GFIPIADKRGKDGKCSRFNDVLN*HSNVTN
Trigger: ATTGGTCACGTTGGAATGCAAATTGAGCACATCATT...AAATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000396503.7
ENST00000570767.5
ENST00000573029.1
CDS-3UTR CAA 90 bp CTACTACGGATGCATACCAATTCACAACCAGTGAAAGGCCACGTACCTAAAAAGGAGTCTTCTTTCCTATaGGTACCAGCTGTGGGATTT +
Preference number: 5 (lower is better)
Translates to: LLRMHTNSQPVKGHVPKKESSFL*VPAVGF
Trigger: AAATCCCACAGCTGGTACCAATAGGAAAGAAGACTC...CTTTTTAGGTACGTGGCCTTTCACTGGTTGTGAATTGGTATGCATCCGTAGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp GACAATTGTGGAAACGTTAGCAATCTACTCTTCCAAGATTCCTTGGAGTTGTCAAAAATCCCTCGTGGCTaGGATAAAATCCAGGGCCTG +
Preference number: 5 (lower is better)
Translates to: DNCGNVSNLLFQDSLELSKIPRG*DKIQGL
Trigger: CAGGCCCTGGATTTTATCCAAGCCACGAGGGATTTT...TGACAACTCCAAGGAATCTTGGAAGAGTAGATTGCTAACGTTTCCACAATTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACATATCACCCTCATACTaGGCCCACGAGAACATCATA +
Preference number: 5 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHISPSY*AHENII
Trigger: TATGATGTTCTCGTGGGCCAAGTATGAGGGTGATAT...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp GTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACAAAGCACCCACATTATCTTaGAAAGCAGTTGAGTCTTTG +
Preference number: 5 (lower is better)
Translates to: VMQRTDWHDYICGFVLHKAPTLS*KAVESL
Trigger: CAAAGACTCAACTGCTTTCAAAGATAATGTGGGTGC...TTTGTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS-3UTR CAA 90 bp TATGTCATGCAGAGAACAGACTGGCACGATTACATATGTGGGTTTGTCCTACACATTACATATGTGGGTTaGTCCTACACAAACCAGACC +
Preference number: 5 (lower is better)
Translates to: YVMQRTDWHDYICGFVLHITYVG*SYTNQT
Trigger: GGTCTGGTTTGTGTAGGACAAACCCACATATGTAAT...GTGTAGGACAAACCCACATATGTAATCGTGCCAGTCTGTTCTCTGCATGACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000571133.6
CDS GCA 72 bp GGCCGCTGGAGTCGAGGTGGAGGTTCCAGTAGCGGCTaGAGAAGACAGCGAGGCCGAGGCCGAATCCTCCAT +
Preference number: 6 (lower is better)
Translates to: GRWSRGGGSSSG*RRQRGRGRILH
Trigger: ATGGAGGATTCGGCCTCGGCCTCGCTGTCTTCTGCAGCCGCTACTGGAACCTCCACCTCGACTCCAGCGGCC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000355674.9
ENST00000396503.7
ENST00000570767.5
ENST00000571133.6
ENST00000573029.1
ENST00000573251.5
ENST00000573618.5
ENST00000574287.1
CDS GCA 72 bp CCTCCATCTTGTTTCCACCTCGTGAAGAGGCGCGTGTaGAACCCCACTGCTGGCTTCTGGTGCGCACGCGCG +
Preference number: 6 (lower is better)
Translates to: PPSCFHLVKRRV*NPTAGFWCARA
Trigger: CGCGCGTGCGCACCAGAAGCCAGCAGTGGGGTTGCACACGCGCCTCTTCACGAGGTGGAAACAAGATGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS CAA 90 bp GTAGCGGCTGCAGAAGACAGCGAGGCCGAGGCCGAATCCTCCATCTaGTTTCCACCTCGTGAAGAGGCGCGTGTGCAACCCCACTGCTGG +
Preference number: 6 (lower is better)
Translates to: VAAAEDSEAEAESSI*FPPREEARVQPHCW
Trigger: CCAGCAGTGGGGTTGCACACGCGCCTCTTCACGAGGTGGAAACAAGATGGAGGATTCGGCCTCGGCCTCGCTGTCTTCTGCAGCCGCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS TCA 72 bp GGCCGAGGCCGAATCCTCCATCTTGTTTCCACCTCGTaGAGAGGCGCGTGTGCAACCCCACTGCTGGCTTCT +
Preference number: 6 (lower is better)
Translates to: GRGRILHLVSTS*RGACATPLLAS
Trigger: AGAAGCCAGCAGTGGGGTTGCACACGCGCCTCTTCACGAGGTGGAAACAAGATGGAGGATTCGGCCTCGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS CAA 72 bp GCAGAAGACAGCGAGGCCGAGGCCGAATCCTCCATCTaGTTTCCACCTCGTGAAGAGGCGCGTGTGCAACCC +
Preference number: 6 (lower is better)
Translates to: AEDSEAEAESSI*FPPREEARVQP
Trigger: GGGTTGCACACGCGCCTCTTCACGAGGTGGAAACAAGATGGAGGATTCGGCCTCGGCCTCGCTGTCTTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS CAA 72 bp GTCGCCAGGTCTATCTCATCTAGCTCCACAGCACACTaGCAACCCAATTCACTAGCGCCAGGCCGCAGGACC +
Preference number: 6 (lower is better)
Translates to: VARSISSSSTAH*QPNSLAPGRRT
Trigger: GGTCCTGCGGCCTGGCGCTAGTGAATTGGGTTGCAAGTGTGCTGTGGAGCTAGATGAGATAGACCTGGCGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000573791.1
CDS GCA 72 bp GAATACTATGAGGCAAGGTCCTGTTCTTTATCCAGCTaGTTCCGTGCTGTCGGGGCCGCTGGAGTCGAGGTG +
Preference number: 6 (lower is better)
Translates to: EYYEARSCSLSS*FRAVGAAGVEV
Trigger: CACCTCGACTCCAGCGGCCCCGACAGCACGGAAGCAGCTGGATAAAGAACAGGACCTTGCCTCATAGTATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396503.7
CDS TCA 72 bp ATGTTTTCAATGATGTGCTCAATTTGCATTCCAACGTaGCCAATACGTATAGCACTGTTCTTTATCCAGCTG +
Preference number: 6 (lower is better)
Translates to: MFSMMCSICIPT*PIRIALFFIQL
Trigger: CAGCTGGATAAAGAACAGTGCTATACGTATTGGTCACGTTGGAATGCAAATTGAGCACATCATTGAAAACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000573029.1