Pregenerated sensors for RPSA (Homo sapiens)
Ensembl gene IDs: ENSG00000168028Ensembl transcript IDs: ENST00000444512.2, ENST00000475346.1, ENST00000478027.2, ENST00000487876.1, ENST00000495394.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGAGCCTCCGCTGGAGGGCGGCCTCCACCCGCTCCCGGGGCACTCTaGGAACCCGCCAGCCCGAGCCTGGCCACGTGCGGGCCGCAGGCC | + |
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Preference number: 5 (lower is better) Translates to: GASAGGRPPPAPGAL*EPASPSLATCGPQA Trigger: GGCCTGCGGCCCGCACGTGGCCAGGCTCGGGCTGGCGGGTTCCCAGAGTGCCCCGGGAGCGGGTGGAGGCCGCCCTCCAGCGGAGGCTCC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000444512.2 |
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| CDS TCA 90 bp | ATCCAGTCTGACCGGCTTTCATCACTAGTCTTCTCACCCTTCATTTaGGCAGGAAAAGCTCATTTTTCTAGCCCTGGAAGGCGCCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: IQSDRLSSLVFSPFI*AGKAHFSSPGRRQG Trigger: TCCCTGGCGCCTTCCAGGGCTAGAAAAATGAGCTTTTCCTGCTCAAATGAAGGGTGAGAAGACTAGTGATGAAAGCCGGTCAGACTGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000444512.2 |
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| CDS CCA 90 bp | ACTCGATATTCCACAGCAACAATCCTGGCACCCAGTAAGCACTTCTaGGCACTGGCCAACTTAATCACTACTACTCCATGTAAAGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: TRYSTATILAPSKHF*ALANLITTTPCKAG Trigger: GCCTGCTTTACATGGAGTAGTAGTGATTAAGTTGGCCAGTGCCCAGAAGTGCTTACTGGGTGCCAGGATTGTTGCTGTGGAATATCGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495394.1 |
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| CDS CCA 90 bp | AGTGAGCTCCCTGCCAAGAGTGGCAGATTATTAAAAAGTGACACTTaGTCAAACCCAAACAGCAAGCACCTTCCTGGCTCTTACATCATC | + |
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Preference number: 5 (lower is better) Translates to: SELPAKSGRLLKSDT*SNPNSKHLPGSYII Trigger: GATGATGTAAGAGCCAGGAAGGTGCTTGCTGTTTGGGTTTGACCAAGTGTCACTTTTTAATAATCTGCCACTCTTGGCAGGGAGCTCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495394.1 |
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| CDS TCA 90 bp | TTTCTCATGTTCATGACCCAACCCAAGTCCCGTAACTCAGACAACTaGCATATTCCTCCCCTGGAGCAGAAATCTTTTCTCTCAATAACA | + |
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Preference number: 5 (lower is better) Translates to: FLMFMTQPKSRNSDN*HIPPLEQKSFLSIT Trigger: TGTTATTGAGAGAAAAGATTTCTGCTCCAGGGGAGGAATATGTCAGTTGTCTGAGTTACGGGACTTGGGTTGGGTCATGAACATGAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000475346.1 ENST00000487876.1 |
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| CDS TCA 90 bp | CCCCACTCCCAACAGCAGTCTATCAGATGCTGTAGCACACTGGAATaGAAACCTCTTAAAGCTAGTATAAAAGTCACAGAGATCATTAAA | + |
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Preference number: 5 (lower is better) Translates to: PHSQQQSIRCCSTLE*KPLKASIKVTEIIK Trigger: TTTAATGATCTCTGTGACTTTTATACTAGCTTTAAGAGGTTTTCATTCCAGTGTGCTACAGCATCTGATAGACTGCTGTTGGGAGTGGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000495394.1 |
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| CDS GCA 90 bp | TACTTATTCCATCATTGGTTCTTAATAATCCACTTCCTGGCTTTCTaGCACTCTTTCCCTTTTATAATCTGCACTGATGCAAGATTCATC | + |
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Preference number: 5 (lower is better) Translates to: YLFHHWFLIIHFLAF*HSFPFIICTDARFI Trigger: GATGAATCTTGCATCAGTGCAGATTATAAAAGGGAAAGAGTGGCAGAAAGCCAGGAAGTGGATTATTAAGAACCAATGATGGAATAAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478027.2 |
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| CDS CCA 72 bp | GCTGGAGGGCGGCCTCCACCCGCTCCCGGGGCACTCTaGGAACCCGCCAGCCCGAGCCTGGCCACGTGCGGG | + |
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Preference number: 6 (lower is better) Translates to: AGGRPPPAPGAL*EPASPSLATCG Trigger: CCCGCACGTGGCCAGGCTCGGGCTGGCGGGTTCCCAGAGTGCCCCGGGAGCGGGTGGAGGCCGCCCTCCAGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000444512.2 |
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| CDS CCA 72 bp | CTCCCGGGGCACTCTGGGAACCCGCCAGCCCGAGCCTaGCCACGTGCGGGCCGCAGGCCTAAGGTGGGGCGC | + |
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Preference number: 6 (lower is better) Translates to: LPGHSGNPPARA*PRAGRRPKVGR Trigger: GCGCCCCACCTTAGGCCTGCGGCCCGCACGTGGCCAGGCTCGGGCTGGCGGGTTCCCAGAGTGCCCCGGGAG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000444512.2 |
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| CDS CCA 72 bp | TTAGCCCGCTTTCTGCACTCCCGCCCACCCGCGGCCTaGTCCGAACCCCAGCTCGGAGCCTCCGCTGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: LARFLHSRPPAA*SEPQLGASAGG Trigger: CCCTCCAGCGGAGGCTCCGAGCTGGGGTTCGGACCAGGCCGCGGGTGGGCGGGAGTGCAGAAAGCGGGCTAA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000444512.2 |
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| CDS TCA 72 bp | ACTCAGAAGTTCATGAGCCAAGACTGGCCTCCACCCTaGGCTTTAATAGTGTGCAGCCTAGATTCAGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: TQKFMSQDWPPP*ALIVCSLDSVG Trigger: GCCAACTGAATCTAGGCTGCACACTATTAAAGCTCAGGGTGGAGGCCAGTCTTGGCTCATGAACTTCTGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000478027.2 |
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| CDS CCA 72 bp | TCCACAGCAACAATCCTGGCACCCAGTAAGCACTTCTaGGCACTGGCCAACTTAATCACTACTACTCCATGT | + |
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Preference number: 6 (lower is better) Translates to: STATILAPSKHF*ALANLITTTPC Trigger: ACATGGAGTAGTAGTGATTAAGTTGGCCAGTGCCCAGAAGTGCTTACTGGGTGCCAGGATTGTTGCTGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495394.1 |
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| CDS CCA 72 bp | AAGTTAGTGGTACTCGATATTCCACAGCAACAATCCTaGCACCCAGTAAGCACTTCTGGGCACTGGCCAACT | + |
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Preference number: 6 (lower is better) Translates to: KLVVLDIPQQQS*HPVSTSGHWPT Trigger: AGTTGGCCAGTGCCCAGAAGTGCTTACTGGGTGCCAGGATTGTTGCTGTGGAATATCGAGTACCACTAACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495394.1 |
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| CDS TCA 72 bp | TTCATGACCCAACCCAAGTCCCGTAACTCAGACAACTaGCATATTCCTCCCCTGGAGCAGAAATCTTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: FMTQPKSRNSDN*HIPPLEQKSFL Trigger: GAGAAAAGATTTCTGCTCCAGGGGAGGAATATGTCAGTTGTCTGAGTTACGGGACTTGGGTTGGGTCATGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000475346.1 ENST00000487876.1 |
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| CDS CCA 72 bp | CCTGCCAAGAGTGGCAGATTATTAAAAAGTGACACTTaGTCAAACCCAAACAGCAAGCACCTTCCTGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: PAKSGRLLKSDT*SNPNSKHLPGS Trigger: AGAGCCAGGAAGGTGCTTGCTGTTTGGGTTTGACCAAGTGTCACTTTTTAATAATCTGCCACTCTTGGCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495394.1 |
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| CDS CAA 72 bp | TTAATGCCTTCCATCCTCTGGTTCTTCCAAACCATATaGTTCATTCCCACCTCTTACCCCACTTTCCACTCA | + |
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Preference number: 6 (lower is better) Translates to: LMPSILWFFQTI*FIPTSYPTFHS Trigger: TGAGTGGAAAGTGGGGTAAGAGGTGGGAATGAACAATATGGTTTGGAAGAACCAGAGGATGGAAGGCATTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000475346.1 |
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| CDS TCA 72 bp | AGATGCCTAAGTGAGGGCAGAAGGATTTGTAACACTTaGCCTGGCTGTGCAAACATTCTTCTCAAGTTTACT | + |
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Preference number: 6 (lower is better) Translates to: RCLSEGRRICNT*PGCANILLKFT Trigger: AGTAAACTTGAGAAGAATGTTTGCACAGCCAGGTCAAGTGTTACAAATCCTTCTGCCCTCACTTAGGCATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000478027.2 |
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| CDS CAA 90 bp | TTAGCCAACTTAATGCCTTCCATCCTCTGGTTCTTCCAAACCATATaGTTCATTCCCACCTCTTACCCCACTTTCCACTCAAAATTCAGT | + |
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Preference number: 6 (lower is better) Translates to: LANLMPSILWFFQTI*FIPTSYPTFHSKFS Trigger: ACTGAATTTTGAGTGGAAAGTGGGGTAAGAGGTGGGAATGAACAATATGGTTTGGAAGAACCAGAGGATGGAAGGCATTAAGTTGGCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000475346.1 |
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| CDS CCA 72 bp | TTCTACTATATATCCCGAGCACCTAGCAACACTACCTaGCCCAATCTAGATGCTCAGTATATTTTTCTCAAG | + |
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Preference number: 6 (lower is better) Translates to: FYYISRAPSNTT*PNLDAQYIFLK Trigger: CTTGAGAAAAATATACTGAGCATCTAGATTGGGCCAGGTAGTGTTGCTAGGTGCTCGGGATATATAGTAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495394.1 |
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| CDS TCA 72 bp | GGCTTTCTGCCACTCTTTCCCTTTTATAATCTGCACTaGTGCAAGATTCATCCTAAAACTCCTTTACAGCAT | + |
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Preference number: 6 (lower is better) Translates to: GFLPLFPFYNLH*CKIHPKTPLQH Trigger: ATGCTGTAAAGGAGTTTTAGGATGAATCTTGCATCAGTGCAGATTATAAAAGGGAAAGAGTGGCAGAAAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000478027.2 |
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