Pregenerated sensors for RPS4Y1 (Homo sapiens)
Ensembl gene IDs: ENSG00000129824Ensembl transcript IDs: ENST00000250784.13, ENST00000477725.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTACTTCGTTTTGGAATGCTACTCCATCACTCTGCCCACAGAGATGGTGTGGGTACAGTGCCAAAATCATaGGCAAATTCAAACCCTACT | + |
|
Preference number: 2 (lower is better) Translates to: VLRFGMLLHHSAHRDGVGTVPKS*ANSNPT Trigger: AGTAGGGTTTGAATTTGCTCATGATTTTGGCACTGT...ACCCACACCATCTCTGTGGGCAGAGTGATGGAGTAGCATTCCAAAACGAAGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000250784.13 |
||
| 3UTR-3UTR GCA 90 bp | AAGACCATCTCCCATAGCTTCCACAAAAGAATGCCGTCCTTTCTGAAATGTCATTACTTCGTTTTGGAATaGTACTCCATCACTCTGCCC | + |
|
Preference number: 2 (lower is better) Translates to: KTISHSFHKRMPSFLKCHYFVLE*YSITLP Trigger: GGGCAGAGTGATGGAGTAGCATTCCAAAACGAAGTA...ATGACATTTCAGAAAGGACGGCATTCTTTTGTGGAAGCTATGGGAGATGGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000250784.13 |
||
| 3UTR-3UTR CCA 90 bp | AAGACCATCTCCCATAGCTTCCACAAAAGAATGCCGTCCTTTCTGAAATGTCATTTTTGTACTTCGTTTTaGAATGCTACTCCATCACTC | + |
|
Preference number: 2 (lower is better) Translates to: KTISHSFHKRMPSFLKCHFCTSF*NATPSL Trigger: GAGTGATGGAGTAGCATTCCAAAACGAAGTACAAAA...ATGACATTTCAGAAAGGACGGCATTCTTTTGTGGAAGCTATGGGAGATGGTCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000250784.13 |
||
| CDS-3UTR CCA 90 bp | TTTTGTACTTCGTTTTGGAATGCTACTCCATCACTCTGCCCACAGAGATGGTGTTGGGGCCCCGGGCCATaGCGAAACTCTGCGACGGAA | + |
|
Preference number: 4 (lower is better) Translates to: FCTSFWNATPSLCPQRWCWGPGP*RNSATE Trigger: TTCCGTCGCAGAGTTTCGCCATGGCCCGGGGCCCCA...ACACCATCTCTGTGGGCAGAGTGATGGAGTAGCATTCCAAAACGAAGTACAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000250784.13 |
||
| CDS-3UTR GCA 90 bp | TTTTGTACTTCGTTTTGGAATGCTACTCCATCACTCTGCCCACAGAGATGGTGTGCTACTCCATCACTCTaGCCACAGAGATGGTGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: FCTSFWNATPSLCPQRWCATPSL*PQRWCG Trigger: CCCACACCATCTCTGTGGGCAGAGTGATGGAGTAGC...ACACCATCTCTGTGGGCAGAGTGATGGAGTAGCATTCCAAAACGAAGTACAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000250784.13 |
||
| CDS-3UTR TCA 90 bp | TTTTGTACTTCGTTTTGGAATGCTACTCCATCACTCTGCCCACAGAGATGGTGTACAGTGCCAAAATCATaGGCAAATTCAAACCCTACT | + |
|
Preference number: 4 (lower is better) Translates to: FCTSFWNATPSLCPQRWCTVPKS*ANSNPT Trigger: AGTAGGGTTTGAATTTGCTCATGATTTTGGCACTGT...ACACCATCTCTGTGGGCAGAGTGATGGAGTAGCATTCCAAAACGAAGTACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000250784.13 |
||
| CDS-3UTR CCA 90 bp | TTTTGTACTTCGTTTTGGAATGCTACTCCATCACTCTGCCCACAGAGATGGTGTTTTTGTACTTCGTTTTaGAATGCTACTCCATCACTC | + |
|
Preference number: 4 (lower is better) Translates to: FCTSFWNATPSLCPQRWCFCTSF*NATPSL Trigger: GAGTGATGGAGTAGCATTCCAAAACGAAGTACAAAA...ACACCATCTCTGTGGGCAGAGTGATGGAGTAGCATTCCAAAACGAAGTACAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000250784.13 |
||
| CDS-3UTR CAA 90 bp | AAGACCATCTCCCATAGCTTCCACAAAAGAATGCCGTCCTTTCTGAAATGTCATGAAATCCAAGGTTTATaGCCATTGCCAATGACAAAA | + |
|
Preference number: 5 (lower is better) Translates to: KTISHSFHKRMPSFLKCHEIQGL*PLPMTK Trigger: TTTTGTCATTGGCAATGGCAATAAACCTTGGATTTC...ATGACATTTCAGAAAGGACGGCATTCTTTTGTGGAAGCTATGGGAGATGGTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000250784.13 |
||
| CDS-3UTR CAA 90 bp | AAGACCATCTCCCATAGCTTCCACAAAAGAATGCCGTCCTTTCTGAAATGTCATTTTTTGTACTTCGTTTaGGAATGCTACTCCATCACT | + |
|
Preference number: 5 (lower is better) Translates to: KTISHSFHKRMPSFLKCHFLYFV*ECYSIT Trigger: AGTGATGGAGTAGCATTCCAAAACGAAGTACAAAAA...ATGACATTTCAGAAAGGACGGCATTCTTTTGTGGAAGCTATGGGAGATGGTCTT 40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000250784.13 |
||
| CDS CCA 72 bp | ACATATTTCCAATTGATAGTCCTCAATGGGCAACTCTaGAGCGGTGGTAACAAAGAGCCCCAGAGACAAACT | + |
|
Preference number: 6 (lower is better) Translates to: TYFQLIVLNGQL*SGGNKEPQRQT Trigger: AGTTTGTCTCTGGGGCTCTTTGTTACCACCGCTCCAGAGTTGCCCATTGAGGACTATCAATTGGAAATATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477725.1 |
||