Pregenerated sensors for RPS28 (Homo sapiens)
Ensembl gene IDs: ENSG00000233927Ensembl transcript IDs: ENST00000449223.3, ENST00000600659.3, ENST00000602140.1
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGAAAAGCTTCGTTTGGCAAGACCGCACGGCCAGGATTTCCAGAGTaGGGAGGATCGGTGACCGCCTGGGAGCCACTCAAGAAACCTGGA | + |
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Preference number: 1 (lower is better) Translates to: GKASFGKTARPGFPE*GGSVTAWEPLKKPG Trigger: TCCAGGTTTCTTGAGTGGCTCCCAGGCGGTCACCGATCCTCCGCACTCTGGAAATCCTGGCCGTGCGGTCTTGCCAAACGAAGCTTTTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CCA 90 bp | CCTGCTCAGAGGCTAACACTGGCCGAAGAGAAAGGCAATTTCAGTTaGGGTGACTGTGGCAGGAAGGGGCTCACTCTGGCCCCACCAAGG | + |
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Preference number: 1 (lower is better) Translates to: PAQRLTLAEEKGNFS*GDCGRKGLTLAPPR Trigger: CCTTGGTGGGGCCAGAGTGAGCCCCTTCCTGCCACAGTCACCCCAACTGAAATTGCCTTTCTCTTCGGCCAGTGTTAGCCTCTGAGCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CCA 90 bp | GGGAGGAAGGTCAAGCGCCTCTTCCAGGTCAGAAGGGGCAGAGGTTaGATACAAACCAGGCAGCCTGGGTCCATGGTAAAAGAACCTCCA | + |
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Preference number: 1 (lower is better) Translates to: GRKVKRLFQVRRGRG*IQTRQPGSMVKEPP Trigger: TGGAGGTTCTTTTACCATGGACCCAGGCTGCCTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAAGAGGCGCTTGACCTTCCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR TCA 90 bp | GGCTTCGTGTTAGACGAGTTTCCCCAACTACAGGCTAAGGCGTTCTaGACAAGCTTAAGATGGACCATGCTAAGCTGTGATGTTTGGGAG | + |
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Preference number: 1 (lower is better) Translates to: GFVLDEFPQLQAKAF*TSLRWTMLSCDVWE Trigger: CTCCCAAACATCACAGCTTAGCATGGTCCATCTTAAGCTTGTTCAGAACGCCTTAGCCTGTAGTTGGGGAAACTCGTCTAACACGAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR TCA 90 bp | CACCTAGCTGTGGGGAGATCTCCTCGTCAGTCACCTCAGCCTTTGGCGCACAGAAGTGCGGAGGATCGGTaGCCGCCTGGGAGCCACTCA | + |
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Preference number: 2 (lower is better) Translates to: HLAVGRSPRQSPQPLAHRSAEDR*PPGSHS Trigger: TGAGTGGCTCCCAGGCGGTCACCGATCCTCCGCACT...TCTGTGCGCCAAAGGCTGAGGTGACTGACGAGGAGATCTCCCCACAGCTAGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR TCA 90 bp | GATCTCCTCGTCAGTCACCTCAGCCTTTGGCGCACAGAAGGGTCCAGGGTCCCCCAATTTCAGTTGGGGTaGCTGTGGCAGGAAGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: DLLVSHLSLWRTEGSRVPQFQLG*LWQEGA Trigger: AGCCCCTTCCTGCCACAGTCACCCCAACTGAAATTG...GGGGACCCTGGACCCTTCTGTGCGCCAAAGGCTGAGGTGACTGACGAGGAGATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR CCA 90 bp | CAGACAGCCACACCTGGTGAAGGAGAATGCGGTGACAATGGAGAGAACCCCCAGGGAAGGGGCTCACTCTaGCCCCACCAAGGTGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: QTATPGEGECGDNGENPQGRGSL*PHQGEV Trigger: CACCTCACCTTGGTGGGGCCAGAGTGAGCCCCTTCC...CTGGGGGTTCTCTCCATTGTCACCGCATTCTCCTTCACCAGGTGTGGCTGTCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR CCA 90 bp | GAAGGTCAAGCGCCTCTTCCAGGTCAGAAGGGGCAGAGGTTGGATACAAACCAGGAGCGAGTCACCCCCTaGCTCCCAGACAGCCACACC | + |
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Preference number: 2 (lower is better) Translates to: EGQAPLPGQKGQRLDTNQERVTP*LPDSHT Trigger: GGTGTGGCTGTCTGGGAGCCAGGGGGTGACTCGCTC...CTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAAGAGGCGCTTGACCTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR GCA 90 bp | AAGGGTCCAGGGTCCCCTGCTCAGAGGCTAACACTGGCCGAAGAGAAAGGCAATCCAGGATTTCCAGAGTaGGGAGGATCGGTGACCGCC | + |
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Preference number: 2 (lower is better) Translates to: KGPGSPAQRLTLAEEKGNPGFPE*GGSVTA Trigger: GGCGGTCACCGATCCTCCGCACTCTGGAAATCCTGG...ATTGCCTTTCTCTTCGGCCAGTGTTAGCCTCTGAGCAGGGGACCCTGGACCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CAA 90 bp | TGGGAGGAAGGTCAAGCGCCTCTTCCAGGTCAGAAGGGGCAGAGGTaGGATACAAACCAGGCAGCCTGGGTCCATGGTAAAAGAACCTCC | + |
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Preference number: 2 (lower is better) Translates to: WEEGQAPLPGQKGQR*DTNQAAWVHGKRTS Trigger: GGAGGTTCTTTTACCATGGACCCAGGCTGCCTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAAGAGGCGCTTGACCTTCCTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR CCA 90 bp | TTCCAGGTCAGAAGGGGCAGAGGTTGGATACAAACCAGGCAGCCTGGGTCCATGGTAAGCTGCCTCGTCTaGCTCACTACACCTAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: FQVRRGRGWIQTRQPGSMVSCLV*LTTPSC Trigger: ACAGCTAGGTGTAGTGAGCCAGACGAGGCAGCTTAC...CATGGACCCAGGCTGCCTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR CCA 90 bp | CCGAAGAGAAAGGCAATTTCAGTTGGGGTGACTGTGGCAGGAAGGGGCTCACTCCGCTTGTGTTTTGTTTaGGGTAGAGGGTGCAATCGA | + |
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Preference number: 2 (lower is better) Translates to: PKRKAISVGVTVAGRGSLRLCFV*GRGCNR Trigger: TCGATTGCACCCTCTACCCCAAACAAAACACAAGCG...GAGTGAGCCCCTTCCTGCCACAGTCACCCCAACTGAAATTGCCTTTCTCTTCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR TCA 90 bp | TTCGTTTGGCAAGACCGCACGGCCAGGATTTCCAGAGTGCGGAGGATCGGTGACACCCAGACAAGAACCTaGGTTAACTTGAAACACAAA | + |
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Preference number: 2 (lower is better) Translates to: FVWQDRTARISRVRRIGDTQTRT*VNLKHK Trigger: TTTGTGTTTCAAGTTAACTCAGGTTCTTGTCTGGGT...GTCACCGATCCTCCGCACTCTGGAAATCCTGGCCGTGCGGTCTTGCCAAACGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR CCA 90 bp | AGAGCCCTGATCCACCCACTCTCTGAAACTTCTTTGCTAATAAAACATTCCTACGGATCGGTGACCGCCTaGGAGCCACTCAAGAAACCT | + |
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Preference number: 2 (lower is better) Translates to: RALIHPLSETSLLIKHSYGSVTA*EPLKKP Trigger: AGGTTTCTTGAGTGGCTCCCAGGCGGTCACCGATCC...GTAGGAATGTTTTATTAGCAAAGAAGTTTCAGAGAGTGGGTGGATCAGGGCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR GCA 72 bp | TCGTTTGGCAAGACCGCACGGCCAGGATTTCCAGAGTaGGGAGGATCGGTGACCGCCTGGGAGCCACTCAAG | + |
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Preference number: 3 (lower is better) Translates to: SFGKTARPGFPE*GGSVTAWEPLK Trigger: CTTGAGTGGCTCCCAGGCGGTCACCGATCCTCCGCACTCTGGAAATCCTGGCCGTGCGGTCTTGCCAAACGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CCA 72 bp | CAGGAAGGGGCTCACTCTGGCCCCACCAAGGTGAGGTaGGGACCAAGTGATAGAGCCCTGATCCACCCACTC | + |
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Preference number: 3 (lower is better) Translates to: QEGAHSGPTKVR*GPSDRALIHPL Trigger: GAGTGGGTGGATCAGGGCTCTATCACTTGGTCCCCACCTCACCTTGGTGGGGCCAGAGTGAGCCCCTTCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR CAA 90 bp | ACAGAAGGGTCCAGGGTCCCCTGCTCAGAGGCTAACACTGGCCGAAGAGAAAGGAAGGAAAAGCTTCGTTaGGCAAGACCGCACGGCCAG | + |
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Preference number: 3 (lower is better) Translates to: TEGSRVPCSEANTGRRERKEKLR*ARPHGQ Trigger: CTGGCCGTGCGGTCTTGCCAAACGAAGCTTTTCCTT...CCTTTCTCTTCGGCCAGTGTTAGCCTCTGAGCAGGGGACCCTGGACCCTTCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CCA 72 bp | CCAGGATTTCCAGAGTGCGGAGGATCGGTGACCGCCTaGGAGCCACTCAAGAAACCTGGAGAAACCCTAGTC | + |
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Preference number: 3 (lower is better) Translates to: PGFPECGGSVTA*EPLKKPGETLV Trigger: GACTAGGGTTTCTCCAGGTTTCTTGAGTGGCTCCCAGGCGGTCACCGATCCTCCGCACTCTGGAAATCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CCA 72 bp | TGGAGAGAACCCCCAGGTTCAGTAAGCTGCCTCGTCTaGCTCACTACACCTAGCTGTGGGGAGATCTCCTCG | + |
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Preference number: 3 (lower is better) Translates to: WREPPGSVSCLV*LTTPSCGEISS Trigger: CGAGGAGATCTCCCCACAGCTAGGTGTAGTGAGCCAGACGAGGCAGCTTACTGAACCTGGGGGTTCTCTCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CCA 72 bp | AGGCTAACACTGGCCGAAGAGAAAGGCAATTTCAGTTaGGGTGACTGTGGCAGGAAGGGGCTCACTCTGGCC | + |
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Preference number: 3 (lower is better) Translates to: RLTLAEEKGNFS*GDCGRKGLTLA Trigger: GGCCAGAGTGAGCCCCTTCCTGCCACAGTCACCCCAACTGAAATTGCCTTTCTCTTCGGCCAGTGTTAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CCA 72 bp | GTCAAGCGCCTCTTCCAGGTCAGAAGGGGCAGAGGTTaGATACAAACCAGGCAGCCTGGGTCCATGGTAAAA | + |
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Preference number: 3 (lower is better) Translates to: VKRLFQVRRGRG*IQTRQPGSMVK Trigger: TTTTACCATGGACCCAGGCTGCCTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAAGAGGCGCTTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CCA 72 bp | AGGATCGGTGACCGCCTGGGAGCCACTCAAGAAACCTaGAGAAACCCTAGTCGTATAACCCAGACAAGAACC | + |
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Preference number: 3 (lower is better) Translates to: RIGDRLGATQET*RNPSRITQTRT Trigger: GGTTCTTGTCTGGGTTATACGACTAGGGTTTCTCCAGGTTTCTTGAGTGGCTCCCAGGCGGTCACCGATCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR-3UTR CAA 90 bp | CCGAAGAGAAAGGCAATTTCAGTTGGGGTGACTGTGGCAGGAAGGGGCTCACTCACATTCCTACTACGCTaGTGTTTTGTTTGGGGTAGA | + |
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Preference number: 3 (lower is better) Translates to: PKRKAISVGVTVAGRGSLTFLLR*CFVWGR Trigger: TCTACCCCAAACAAAACACAAGCGTAGTAGGAATGT...GAGTGAGCCCCTTCCTGCCACAGTCACCCCAACTGAAATTGCCTTTCTCTTCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR CCA 72 bp | ACAAGCTTAAGATGGACCATGCTAAGCTGTGATGTTTaGGAGATTAGGTGTATTAAACACATTTCAACTTGC | + |
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Preference number: 3 (lower is better) Translates to: TSLRWTMLSCDV*EIRCIKHISTC Trigger: GCAAGTTGAAATGTGTTTAATACACCTAATCTCCCAAACATCACAGCTTAGCATGGTCCATCTTAAGCTTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| 3UTR TCA 72 bp | ATTAAACACATTTCAACTTGCAATACTTTCAACCTATaGTGTACTCACCGGAATGTAACCCATTGTAAACTG | + |
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Preference number: 3 (lower is better) Translates to: IKHISTCNTFNL*CTHRNVTHCKL Trigger: CAGTTTACAATGGGTTACATTCCGGTGAGTACATCATAGGTTGAAAGTATTGCAAGTTGAAATGTGTTTAAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | ACGGCCAGGATTTCCAGAGTGCGGAGGATCGGTGACCGCCTGGGAGCCACTCAAGGAAGGGGCTCACTCTaGCCCCACCAAGGTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: TARISRVRRIGDRLGATQGRGSL*PHQGEV Trigger: CACCTCACCTTGGTGGGGCCAGAGTGAGCCCCTTCC...TTGAGTGGCTCCCAGGCGGTCACCGATCCTCCGCACTCTGGAAATCCTGGCCGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR TCA 90 bp | CGCCTCTTCCAGGTCAGAAGGGGCAGAGGTTGGATACAAACCAGGCAGCCTGGGCTGGCCCCACCAAGGTaGGGTGGGGACCAAGTGATA | + |
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Preference number: 4 (lower is better) Translates to: RLFQVRRGRGWIQTRQPGLAPPR*GGDQVI Trigger: TATCACTTGGTCCCCACCTCACCTTGGTGGGGCCAG...CCCAGGCTGCCTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAAGAGGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR GCA 90 bp | TCACCCCACTGGAAGGGATGTGGGAGGAAGGTCAAGCGCCTCTTCCAGGTCAGAGGGTCCAGGGTCCCCTaGTCAGAGGCTAACACTGGC | + |
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Preference number: 4 (lower is better) Translates to: SPHWKGCGRKVKRLFQVRGSRVP*SEANTG Trigger: GCCAGTGTTAGCCTCTGAGCAGGGGACCCTGGACCC...TCTGACCTGGAAGAGGCGCTTGACCTTCCTCCCACATCCCTTCCAGTGGGGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | GATCTCCTCGTCAGTCACCTCAGCCTTTGGCGCACAGAAGGGTCCAGGGTCCCCCCCACCAAGGTGAGGTaGGGACCAAGTGATAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: DLLVSHLSLWRTEGSRVPPTKVR*GPSDRA Trigger: GGCTCTATCACTTGGTCCCCACCTCACCTTGGTGGG...GGGGACCCTGGACCCTTCTGTGCGCCAAAGGCTGAGGTGACTGACGAGGAGATC 61% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | TCTGGCTCACTACACCTAGCTGTGGGGAGATCTCCTCGTCAGTCACCTCAGCCTGAGCGAGTCACCCCCTaGCTCCCAGACAGCCACACC | + |
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Preference number: 4 (lower is better) Translates to: SGSLHLAVGRSPRQSPQPERVTP*LPDSHT Trigger: GGTGTGGCTGTCTGGGAGCCAGGGGGTGACTCGCTC...AGGCTGAGGTGACTGACGAGGAGATCTCCCCACAGCTAGGTGTAGTGAGCCAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR TCA 90 bp | GAAGGTCAAGCGCCTCTTCCAGGTCAGAAGGGGCAGAGGTTGGATACAAACCAGAGTGCGGAGGATCGGTaGCCGCCTGGGAGCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: EGQAPLPGQKGQRLDTNQSAEDR*PPGSHS Trigger: TGAGTGGCTCCCAGGCGGTCACCGATCCTCCGCACT...CTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAAGAGGCGCTTGACCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | GCTGTGGGGAGATCTCCTCGTCAGTCACCTCAGCCTTTGGCGCACAGAAGGGTCGGATCGGTGACCGCCTaGGAGCCACTCAAGAAACCT | + |
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Preference number: 4 (lower is better) Translates to: AVGRSPRQSPQPLAHRRVGSVTA*EPLKKP Trigger: AGGTTTCTTGAGTGGCTCCCAGGCGGTCACCGATCC...GACCCTTCTGTGCGCCAAAGGCTGAGGTGACTGACGAGGAGATCTCCCCACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR GCA 90 bp | TTTGGCAAGACCGCACGGCCAGGATTTCCAGAGTGCGGAGGATCGGTGACCGCCCCAGGTTCAGTAAGCTaGCTCGTCTGGCTCACTACA | + |
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Preference number: 4 (lower is better) Translates to: FGKTARPGFPECGGSVTAPGSVS*LVWLTT Trigger: TGTAGTGAGCCAGACGAGGCAGCTTACTGAACCTGG...GGCGGTCACCGATCCTCCGCACTCTGGAAATCCTGGCCGTGCGGTCTTGCCAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR GCA 90 bp | GGGATGTGGGAGGAAGGTCAAGCGCCTCTTCCAGGTCAGAAGGGGCAGAGGTTGGTTTGGGGTAGAGGGTaGAATCGACAAACACGACCC | + |
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Preference number: 4 (lower is better) Translates to: GMWEEGQAPLPGQKGQRLVWGRG*NRQTRP Trigger: GGGTCGTGTTTGTCGATTGCACCCTCTACCCCAAAC...CAACCTCTGCCCCTTCTGACCTGGAAGAGGCGCTTGACCTTCCTCCCACATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | ACAGAAGGGTCCAGGGTCCCCTGCTCAGAGGCTAACACTGGCCGAAGAGAAAGGAGGAAAAGCTTCGTTTaGCAAGACCGCACGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: TEGSRVPCSEANTGRRERRKSFV*QDRTAR Trigger: CCTGGCCGTGCGGTCTTGCCAAACGAAGCTTTTCCT...CCTTTCTCTTCGGCCAGTGTTAGCCTCTGAGCAGGGGACCCTGGACCCTTCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | CACCTAGCTGTGGGGAGATCTCCTCGTCAGTCACCTCAGCCTTTGGCGCACAGACTGTACTCACCCCACTaGAAGGGATGTGGGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: HLAVGRSPRQSPQPLAHRLYSPH*KGCGRK Trigger: CTTCCTCCCACATCCCTTCCAGTGGGGTGAGTACAG...TCTGTGCGCCAAAGGCTGAGGTGACTGACGAGGAGATCTCCCCACAGCTAGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | CACCTAGCTGTGGGGAGATCTCCTCGTCAGTCACCTCAGCCTTTGGCGCACAGAGTAAGCTGCCTCGTCTaGCTCACTACACCTAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: HLAVGRSPRQSPQPLAHRVSCLV*LTTPSC Trigger: ACAGCTAGGTGTAGTGAGCCAGACGAGGCAGCTTAC...TCTGTGCGCCAAAGGCTGAGGTGACTGACGAGGAGATCTCCCCACAGCTAGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | GAAGGTCAAGCGCCTCTTCCAGGTCAGAAGGGGCAGAGGTTGGATACAAACCAGCCACTGGAAGGGATGTaGGAGGAAGGTCAAGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: EGQAPLPGQKGQRLDTNQPLEGM*EEGQAP Trigger: AGGCGCTTGACCTTCCTCCCACATCCCTTCCAGTGG...CTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAAGAGGCGCTTGACCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR TCA 90 bp | CCGAAGAGAAAGGCAATTTCAGTTGGGGTGACTGTGGCAGGAAGGGGCTCACTCCAATTTCAGTTGGGGTaGCTGTGGCAGGAAGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: PKRKAISVGVTVAGRGSLQFQLG*LWQEGA Trigger: AGCCCCTTCCTGCCACAGTCACCCCAACTGAAATTG...GAGTGAGCCCCTTCCTGCCACAGTCACCCCAACTGAAATTGCCTTTCTCTTCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR GCA 90 bp | CACCCCACTGGAAGGGATGTGGGAGGAAGGTCAAGCGCCTCTTCCAGGTCAGAACCTGGTGAAGGAGAATaGGGTGACAATGGAGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: HPTGRDVGGRSSASSRSEPGEGE*GDNGEN Trigger: GTTCTCTCCATTGTCACCGCATTCTCCTTCACCAGG...TTCTGACCTGGAAGAGGCGCTTGACCTTCCTCCCACATCCCTTCCAGTGGGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR TCA 90 bp | TTCCAGGTCAGAAGGGGCAGAGGTTGGATACAAACCAGGCAGCCTGGGTCCATGCAAGTGATAGAGCCCTaGTCCACCCACTCTCTGAAA | + |
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Preference number: 4 (lower is better) Translates to: FQVRRGRGWIQTRQPGSMQVIEP*STHSLK Trigger: TTTCAGAGAGTGGGTGGATCAGGGCTCTATCACTTG...CATGGACCCAGGCTGCCTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR GCA 90 bp | TCTGGCTCACTACACCTAGCTGTGGGGAGATCTCCTCGTCAGTCACCTCAGCCTGAATCCCACGTTTCCTaGCTCAAGGAGATTGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SGSLHLAVGRSPRQSPQPESHVS*LKEIAA Trigger: TGCTGCAATCTCCTTGAGGCAGGAAACGTGGGATTC...AGGCTGAGGTGACTGACGAGGAGATCTCCCCACAGCTAGGTGTAGTGAGCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | GAAGGTCAAGCGCCTCTTCCAGGTCAGAAGGGGCAGAGGTTGGATACAAACCAGAGAAGGGGCAGAGGTTaGATACAAACCAGGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: EGQAPLPGQKGQRLDTNQRRGRG*IQTRQP Trigger: AGGCTGCCTGGTTTGTATCCAACCTCTGCCCCTTCT...CTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAAGAGGCGCTTGACCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR TCA 90 bp | ACGGCCAGGATTTCCAGAGTGCGGAGGATCGGTGACCGCCTGGGAGCCACTCAAGATCCACCCACTCTCTaGAACTTCTTTGCTAATAAA | + |
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Preference number: 4 (lower is better) Translates to: TARISRVRRIGDRLGATQDPPTL*NFFANK Trigger: TTTATTAGCAAAGAAGTTTCAGAGAGTGGGTGGATC...TTGAGTGGCTCCCAGGCGGTCACCGATCCTCCGCACTCTGGAAATCCTGGCCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CCA 90 bp | GAAGGTCAAGCGCCTCTTCCAGGTCAGAAGGGGCAGAGGTTGGATACAAACCAGCGCTTGTGTTTTGTTTaGGGTAGAGGGTGCAATCGA | + |
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Preference number: 4 (lower is better) Translates to: EGQAPLPGQKGQRLDTNQRLCFV*GRGCNR Trigger: TCGATTGCACCCTCTACCCCAAACAAAACACAAGCG...CTGGTTTGTATCCAACCTCTGCCCCTTCTGACCTGGAAGAGGCGCTTGACCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR TCA 90 bp | GCGGTGACAATGGAGAGAACCCCCAGGTTCAGTAAGCTGCCTCGTCTGGCTCACACCCAGACAAGAACCTaGGTTAACTTGAAACACAAA | + |
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Preference number: 4 (lower is better) Translates to: AVTMERTPRFSKLPRLAHTQTRT*VNLKHK Trigger: TTTGTGTTTCAAGTTAACTCAGGTTCTTGTCTGGGT...GTGAGCCAGACGAGGCAGCTTACTGAACCTGGGGGTTCTCTCCATTGTCACCGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS CCA 90 bp | CGGAAGATGGCGTCCGCCACCCGTCTCATCCAGCGGCTGCGGAACTaGGCGTCCGGGGTGCGCGGGGCGGACAGGGCTGCACCATGGGGG | + |
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Preference number: 5 (lower is better) Translates to: RKMASATRLIQRLRN*ASGVRGADRAAPWG Trigger: CCCCCATGGTGCAGCCCTGTCCGCCCCGCGCACCCCGGACGCCCAGTTCCGCAGCCGCTGGATGAGACGGGTGGCGGACGCCATCTTCCG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449223.3 |
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| CDS GCA 90 bp | ATCGCGGACGGAAGATGGCGTCCGCCACCCGTCTCATCCAGCGGCTaGGGAACTGGGCGTCCGGGGTGCGCGGGGCGGACAGGGCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: IADGRWRPPPVSSSG*GTGRPGCAGRTGLH Trigger: GTGCAGCCCTGTCCGCCCCGCGCACCCCGGACGCCCAGTTCCGCAGCCGCTGGATGAGACGGGTGGCGGACGCCATCTTCCGTCCGCGAT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449223.3 |
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| CDS CCA 90 bp | GTGGAGACGTCACCGGCTGCGCCCTTCAGTATCGCGGACGGAAGATaGCGTCCGCCACCCGTCTCATCCAGCGGCTGCGGAACTGGGCGT | + |
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Preference number: 5 (lower is better) Translates to: VETSPAAPFSIADGR*RPPPVSSSGCGTGR Trigger: ACGCCCAGTTCCGCAGCCGCTGGATGAGACGGGTGGCGGACGCCATCTTCCGTCCGCGATACTGAAGGGCGCAGCCGGTGACGTCTCCAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449223.3 |
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| CDS CCA 90 bp | AGTGGAGGAAGAAGTAAGGGCGGGCCGCGGAAAGGCACCGCGGAGTaGGAAGCAGATATGAATTCAGAGAACGTGTCGGGGCCAGAATAC | + |
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Preference number: 5 (lower is better) Translates to: SGGRSKGGPRKGTAE*EADMNSENVSGPEY Trigger: GTATTCTGGCCCCGACACGTTCTCTGAATTCATATCTGCTTCCCACTCCGCGGTGCCTTTCCGCGGCCCGCCCTTACTTCTTCCTCCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000449223.3 ENST00000602140.1 |
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| CDS-3UTR CAA 90 bp | TCTGGCTCACTACACCTAGCTGTGGGGAGATCTCCTCGTCAGTCACCTCAGCCTAAGGAAAAGCTTCGTTaGGCAAGACCGCACGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SGSLHLAVGRSPRQSPQPKEKLR*ARPHGQ Trigger: CTGGCCGTGCGGTCTTGCCAAACGAAGCTTTTCCTT...AGGCTGAGGTGACTGACGAGGAGATCTCCCCACAGCTAGGTGTAGTGAGCCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS TCA 90 bp | AGAATACAGATCGTTAAAGGGAACCATCAGAACCCCGTGATGAAATaGGAATCGGCTCCCGGATTCCGGCTGGCAGGGGTTAGGGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: RIQIVKGNHQNPVMK*ESAPGFRLAGVRAG Trigger: CCCTGCCCTAACCCCTGCCAGCCGGAATCCGGGAGCCGATTCTCATTTCATCACGGGGTTCTGATGGTTCCCTTTAACGATCTGTATTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000449223.3 ENST00000602140.1 |
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| CDS-3UTR CAA 90 bp | TCACCCCACTGGAAGGGATGTGGGAGGAAGGTCAAGCGCCTCTTCCAGGTCAGAACATTCCTACTACGCTaGTGTTTTGTTTGGGGTAGA | + |
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Preference number: 5 (lower is better) Translates to: SPHWKGCGRKVKRLFQVRTFLLR*CFVWGR Trigger: TCTACCCCAAACAAAACACAAGCGTAGTAGGAATGT...TCTGACCTGGAAGAGGCGCTTGACCTTCCTCCCACATCCCTTCCAGTGGGGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS-3UTR CAA 90 bp | AGAGCCCTGATCCACCCACTCTCTGAAACTTCTTTGCTAATAAAACATTCCTACTACTACGCTTGTGTTTaGTTTGGGGTAGAGGGTGCA | + |
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Preference number: 5 (lower is better) Translates to: RALIHPLSETSLLIKHSYYYACV*FGVEGA Trigger: TGCACCCTCTACCCCAAACAAAACACAAGCGTAGTA...GTAGGAATGTTTTATTAGCAAAGAAGTTTCAGAGAGTGGGTGGATCAGGGCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600659.3 |
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| CDS CCA 72 bp | GCGTCCGCCACCCGTCTCATCCAGCGGCTGCGGAACTaGGCGTCCGGGGTGCGCGGGGCGGACAGGGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: ASATRLIQRLRN*ASGVRGADRAA Trigger: TGCAGCCCTGTCCGCCCCGCGCACCCCGGACGCCCAGTTCCGCAGCCGCTGGATGAGACGGGTGGCGGACGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449223.3 |
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| CDS CCA 72 bp | TCACCGGCTGCGCCCTTCAGTATCGCGGACGGAAGATaGCGTCCGCCACCCGTCTCATCCAGCGGCTGCGGA | + |
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Preference number: 6 (lower is better) Translates to: SPAAPFSIADGR*RPPPVSSSGCG Trigger: TCCGCAGCCGCTGGATGAGACGGGTGGCGGACGCCATCTTCCGTCCGCGATACTGAAGGGCGCAGCCGGTGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449223.3 |
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| CDS CCA 72 bp | AGAAGTAAGGGCGGGCCGCGGAAAGGCACCGCGGAGTaGGAAGCAGATATGAATTCAGAGAACGTGTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: RSKGGPRKGTAE*EADMNSENVSG Trigger: CCCCGACACGTTCTCTGAATTCATATCTGCTTCCCACTCCGCGGTGCCTTTCCGCGGCCCGCCCTTACTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000449223.3 ENST00000602140.1 |
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| CDS CAA 90 bp | GATGTTGACAGGCCCCGCAGCAATTGGCAAACTCCCGCCTCCCTCTaGTCAGTCTCTGTATGTAGACTCTGCCTCCCAAACCCTCTCACC | + |
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Preference number: 6 (lower is better) Translates to: DVDRPRSNWQTPASL*SVSVCRLCLPNPLT Trigger: GGTGAGAGGGTTTGGGAGGCAGAGTCTACATACAGAGACTGACAAGAGGGAGGCGGGAGTTTGCCAATTGCTGCGGGGCCTGTCAACATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602140.1 |
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| CDS CAA 90 bp | GAACCCGACATCCAAGACCCTGTAAACAGACCCAAACATGAGATGTaGACAGGCCCCGCAGCAATTGGCAAACTCCCGCCTCCCTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: EPDIQDPVNRPKHEM*TGPAAIGKLPPPSC Trigger: ACAAGAGGGAGGCGGGAGTTTGCCAATTGCTGCGGGGCCTGTCAACATCTCATGTTTGGGTCTGTTTACAGGGTCTTGGATGTCGGGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602140.1 |
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| CDS CAA 72 bp | ATCCAAGACCCTGTAAACAGACCCAAACATGAGATGTaGACAGGCCCCGCAGCAATTGGCAAACTCCCGCCT | + |
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Preference number: 6 (lower is better) Translates to: IQDPVNRPKHEM*TGPAAIGKLPP Trigger: AGGCGGGAGTTTGCCAATTGCTGCGGGGCCTGTCAACATCTCATGTTTGGGTCTGTTTACAGGGTCTTGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602140.1 |
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| CDS TCA 72 bp | ACCCGACATCCAAGACCCTGTAAACAGACCCAAACATaGGATGTTGACAGGCCCCGCAGCAATTGGCAAACT | + |
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Preference number: 6 (lower is better) Translates to: TRHPRPCKQTQT*DVDRPRSNWQT Trigger: AGTTTGCCAATTGCTGCGGGGCCTGTCAACATCTCATGTTTGGGTCTGTTTACAGGGTCTTGGATGTCGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602140.1 |
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