Pregenerated sensors for RPS13 (Homo sapiens)
Ensembl gene IDs: ENSG00000110700Ensembl transcript IDs: ENST00000525828.1, ENST00000527571.1, ENST00000528074.1, ENST00000531008.5, ENST00000531908.5, ENST00000534329.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTGGGACAGGCCCTTCCTGGGGAGAGAAGCAGTCTCGAGGTGAGGTaGCGGCTAGTGCCAGAGCAGCCCAGAACATCATCCCCTCGGCCC | + |
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Preference number: 5 (lower is better) Translates to: LGQALPGERSSLEVR*RLVPEQPRTSSPRP Trigger: GGGCCGAGGGGATGATGTTCTGGGCTGCTCTGGCACTAGCCGCCACCTCACCTCGAGACTGCTTCTCTCCCCAGGAAGGGCCTGTCCCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000525828.1 ENST00000527571.1 |
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| CDS GCA 90 bp | CATGTTCAGCACATAGAAGGTAAACATTTGCTGAATGAAGCCACTTaGACGAAGTCACACGCAGCTGAGATTCAAACCACACCTAACTGT | + |
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Preference number: 5 (lower is better) Translates to: HVQHIEGKHLLNEAT*TKSHAAEIQTTPNC Trigger: ACAGTTAGGTGTGGTTTGAATCTCAGCTGCGTGTGACTTCGTGCAAGTGGCTTCATTCAGCAAATGTTTACCTTCTATGTGCTGAACATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527571.1 |
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| CDS CCA 72 bp | AAAACCGCGCTCCTCATACACGCAAGTTCCTCACCCTaGCGTCGCTTCACCCGAGACAAATGCCAACCCCCT | + |
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Preference number: 6 (lower is better) Translates to: KTALLIHASSSP*RRFTRDKCQPP Trigger: AGGGGGTTGGCATTTGTCTCGGGTGAAGCGACGCCAGGGTGAGGAACTTGCGTGTATGAGGAGCGCGGTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000528074.1 |
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| CDS CCA 72 bp | CCAACTCCTCCACTTGACAGCTGTGTGATTTGGGGCTaGTTAGTATCCAGCGGCAGTGTGCCTCTGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: PTPPLDSCVIWG*LVSSGSVPLLP Trigger: AGGAAGCAGAGGCACACTGCCGCTGGATACTAACCAGCCCCAAATCACACAGCTGTCAAGTGGAGGAGTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527571.1 ENST00000534329.1 |
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| CDS CAA 72 bp | CCCCAGAACCATGTTCAGCACATAGAAGGTAAACATTaGCTGAATGAAGCCACTTGCACGAAGTCACACGCA | + |
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Preference number: 6 (lower is better) Translates to: PQNHVQHIEGKH*LNEATCTKSHA Trigger: TGCGTGTGACTTCGTGCAAGTGGCTTCATTCAGCAAATGTTTACCTTCTATGTGCTGAACATGGTTCTGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000527571.1 |
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| CDS GCA 72 bp | CACATAGAAGGTAAACATTTGCTGAATGAAGCCACTTaGACGAAGTCACACGCAGCTGAGATTCAAACCACA | + |
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Preference number: 6 (lower is better) Translates to: HIEGKHLLNEAT*TKSHAAEIQTT Trigger: TGTGGTTTGAATCTCAGCTGCGTGTGACTTCGTGCAAGTGGCTTCATTCAGCAAATGTTTACCTTCTATGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527571.1 |
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| CDS CCA 72 bp | CAGCGGCAGTGTGCCTCTGCTTCCTCAACTGTAAACTaGGGTGAAAGCCATGAAGATTTATTTCAAAGTATT | + |
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Preference number: 6 (lower is better) Translates to: QRQCASASSTVN*GESHEDLFQSI Trigger: AATACTTTGAAATAAATCTTCATGGCTTTCACCCCAGTTTACAGTTGAGGAAGCAGAGGCACACTGCCGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000527571.1 ENST00000534329.1 |
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| CDS GCA 72 bp | TTACCCAACACTAAGGAAAACCTTTCTGGTGGAAACTaGGAATGTTGGAAAACCATCATCACAGTGAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LPNTKENLSGGN*ECWKTIITVSL Trigger: CAAGCTCACTGTGATGATGGTTTTCCAACATTCGCAGTTTCCACCAGAAAGGTTTTCCTTAGTGTTGGGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000531908.5 |
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| CDS CCA 72 bp | TCAAAGCAGCACTACACTGGTTTGTGTACTAAGCCTTaGATAATTCAAACCAGATGCATTACATTTTACCGA | + |
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Preference number: 6 (lower is better) Translates to: SKQHYTGLCTKP*IIQTRCITFYR Trigger: TCGGTAAAATGTAATGCATCTGGTTTGAATTATCCAAGGCTTAGTACACAAACCAGTGTAGTGCTGCTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531008.5 |
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| CDS CAA 72 bp | ACTGGGGTGAAAGCCATGAAGATTTATTTCAAAGTATaGTGGTCAGAATTAAACGAAATCAGTACATGTGAA | + |
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Preference number: 6 (lower is better) Translates to: TGVKAMKIYFKV*WSELNEISTCE Trigger: TTCACATGTACTGATTTCGTTTAATTCTGACCACAATACTTTGAAATAAATCTTCATGGCTTTCACCCCAGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000527571.1 ENST00000528074.1 ENST00000534329.1 |
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