Pregenerated sensors for RPS11 (Homo sapiens)
Ensembl gene IDs: ENSG00000142534Ensembl transcript IDs: ENST00000596873.1, ENST00000599167.5, ENST00000600027.5, ENST00000601216.1, ENST00000602252.5
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTTTCCCTCCCTCAGTTGGCCTTAAATTGGTCCGATCTGGAATCTaGAGGCTGAGAGAGCGTGGCCTGAGCAACCTGATGGGCCACTGC | + |
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Preference number: 1 (lower is better) Translates to: SFPPSVGLKLVRSGI*RLRERGLSNLMGHC Trigger: GCAGTGGCCCATCAGGTTGCTCAGGCCACGCTCTCTCAGCCTTCAGATTCCAGATCGGACCAATTTAAGGCCAACTGAGGGAGGGAAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| 3UTR-3UTR TCA 90 bp | CCAAGCATTTCAGGTAGAGATATTCACCCTGTAGAACGCTTTGATTCTGAAGAAGTCCGATCTGGAATCTaGAGGCTGAGAGAGCGTGGC | + |
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Preference number: 2 (lower is better) Translates to: PSISGRDIHPVERFDSEEVRSGI*RLRERG Trigger: GCCACGCTCTCTCAGCCTTCAGATTCCAGATCGGAC...TTCTTCAGAATCAAAGCGTTCTACAGGGTGAATATCTCTACCTGAAATGCTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| 3UTR-3UTR CCA 90 bp | CCAAGCATTTCAGGTAGAGATATTCACCCTGTAGAACGCTTTGATTCTGAAGAAAAGGCTGAGAGAGCGTaGCCTGAGCAACCTGATGGG | + |
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Preference number: 2 (lower is better) Translates to: PSISGRDIHPVERFDSEEKAERA*PEQPDG Trigger: CCCATCAGGTTGCTCAGGCCACGCTCTCTCAGCCTT...TTCTTCAGAATCAAAGCGTTCTACAGGGTGAATATCTCTACCTGAAATGCTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| 3UTR-3UTR CCA 90 bp | CCAAGCATTTCAGGTAGAGATATTCACCCTGTAGAACGCTTTGATTCTGAAGAACAGTTGGCCTTAAATTaGTCCGATCTGGAATCTGAA | + |
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Preference number: 2 (lower is better) Translates to: PSISGRDIHPVERFDSEEQLALN*SDLESE Trigger: TTCAGATTCCAGATCGGACCAATTTAAGGCCAACTG...TTCTTCAGAATCAAAGCGTTCTACAGGGTGAATATCTCTACCTGAAATGCTTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| 3UTR TCA 72 bp | CCCTCAGTTGGCCTTAAATTGGTCCGATCTGGAATCTaGAGGCTGAGAGAGCGTGGCCTGAGCAACCTGATG | + |
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Preference number: 3 (lower is better) Translates to: PSVGLKLVRSGI*RLRERGLSNLM Trigger: CATCAGGTTGCTCAGGCCACGCTCTCTCAGCCTTCAGATTCCAGATCGGACCAATTTAAGGCCAACTGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| CDS-3UTR TCA 90 bp | ATCTGGAATCTGAAGGCTGAGAGAGCGTGGCCTGAGCAACCTGATGGGCCACTGGCCACTGCGCTCACCTaGAGCAGGGGGACAGGTGTA | + |
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Preference number: 4 (lower is better) Translates to: IWNLKAERAWPEQPDGPLATALT*SRGTGV Trigger: TACACCTGTCCCCCTGCTTCAGGTGAGCGCAGTGGC...CAGTGGCCCATCAGGTTGCTCAGGCCACGCTCTCTCAGCCTTCAGATTCCAGAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| CDS-3UTR GCA 90 bp | ATCTGGAATCTGAAGGCTGAGAGAGCGTGGCCTGAGCAACCTGATGGGCCACTGAACCTGATGGGCCACTaGGCTCACCTGAAGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: IWNLKAERAWPEQPDGPLNLMGH*AHLKQG Trigger: CCCCTGCTTCAGGTGAGCGCAGTGGCCCATCAGGTT...CAGTGGCCCATCAGGTTGCTCAGGCCACGCTCTCTCAGCCTTCAGATTCCAGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| CDS-3UTR CCA 90 bp | ATCTGGAATCTGAAGGCTGAGAGAGCGTGGCCTGAGCAACCTGATGGGCCACTGAAGGCTGAGAGAGCGTaGCCTGAGCAACCTGATGGG | + |
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Preference number: 4 (lower is better) Translates to: IWNLKAERAWPEQPDGPLKAERA*PEQPDG Trigger: CCCATCAGGTTGCTCAGGCCACGCTCTCTCAGCCTT...CAGTGGCCCATCAGGTTGCTCAGGCCACGCTCTCTCAGCCTTCAGATTCCAGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| CDS-3UTR TCA 90 bp | CCAAGCATTTCAGGTAGAGATATTCACCCTGTAGAACGCTTTGATTCTGAAGAAATGATATACAAATCCTaGGATTCTGGGGCTTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: PSISGRDIHPVERFDSEEMIYKS*DSGASQ Trigger: CTGGGAAGCCCCAGAATCTCAGGATTTGTATATCAT...TTCTTCAGAATCAAAGCGTTCTACAGGGTGAATATCTCTACCTGAAATGCTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| CDS CCA 90 bp | CAGCAGCCCCAGAAGCCACTTAGATGCAGGCAGGGCAACTCGTCGTaGGCACACGTGCAGGAACGCCAGGTTCCCCTTCTTTCTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: QQPQKPLRCRQGNSS*AHVQERQVPLLSSE Trigger: CTCAGAAGAAAGAAGGGGAACCTGGCGTTCCTGCACGTGTGCCCACGACGAGTTGCCCTGCCTGCATCTAAGTGGCTTCTGGGGCTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000599167.5 ENST00000601216.1 ENST00000602252.5 |
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| CDS GCA 90 bp | AGAAGCCACTTAGATGCAGGCAGGGCAACTCGTCGTGGGCACACGTaGAGGAACGCCAGGTTCCCCTTCTTTCTTCTGAGGTTCCCCGCA | + |
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Preference number: 5 (lower is better) Translates to: RSHLDAGRATRRGHT*RNARFPFFLLRFPA Trigger: TGCGGGGAACCTCAGAAGAAAGAAGGGGAACCTGGCGTTCCTGCACGTGTGCCCACGACGAGTTGCCCTGCCTGCATCTAAGTGGCTTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000599167.5 ENST00000601216.1 ENST00000602252.5 |
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| CDS GCA 90 bp | TGCCCACGTGGGCATCTGAAGACCATCGTGAAAACAAACATCATCTaGCAATGTACCTGGACCTACAAGTTTGCATTCCTAACCACCCCT | + |
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Preference number: 5 (lower is better) Translates to: CPRGHLKTIVKTNII*QCTWTYKFAFLTTP Trigger: AGGGGTGGTTAGGAATGCAAACTTGTAGGTCCAGGTACATTGGCAGATGATGTTTGTTTTCACGATGGTCTTCAGATGCCCACGTGGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000599167.5 ENST00000600027.5 |
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| CDS-3UTR CAA 90 bp | CCAAGCATTTCAGGTAGAGATATTCACCCTGTAGAACGCTTTGATTCTGAAGAACTTTCCCTCCCTCAGTaGGCCTTAAATTGGTCCGAT | + |
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Preference number: 5 (lower is better) Translates to: PSISGRDIHPVERFDSEELSLPQ*ALNWSD Trigger: ATCGGACCAATTTAAGGCCAACTGAGGGAGGGAAAG...TTCTTCAGAATCAAAGCGTTCTACAGGGTGAATATCTCTACCTGAAATGCTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| CDS CCA 72 bp | CCTTGGGCGGGCGGTTCCTTAAAAGAGCCAGGGGCGTaGCCTCAGGGAAGCAACTACAATTCCCAGCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: PWAGGSLKEPGA*PQGSNYNSQQP Trigger: GGGCTGCTGGGAATTGTAGTTGCTTCCCTGAGGCCACGCCCCTGGCTCTTTTAAGGAACCGCCCGCCCAAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000599167.5 ENST00000601216.1 ENST00000602252.5 |
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| CDS CCA 72 bp | CAGAAGCCACTTAGATGCAGGCAGGGCAACTCGTCGTaGGCACACGTGCAGGAACGCCAGGTTCCCCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: QKPLRCRQGNSS*AHVQERQVPLL Trigger: AAGAAGGGGAACCTGGCGTTCCTGCACGTGTGCCCACGACGAGTTGCCCTGCCTGCATCTAAGTGGCTTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000599167.5 ENST00000601216.1 ENST00000602252.5 |
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| CDS TCA 72 bp | ACACGTGCAGGAACGCCAGGTTCCCCTTCTTTCTTCTaGGGTTCCCCGCACCTCCTTGGGTGTCTTGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: TRAGTPGSPSFF*GSPHLLGCLEA Trigger: GGCTTCAAGACACCCAAGGAGGTGCGGGGAACCTCAGAAGAAAGAAGGGGAACCTGGCGTTCCTGCACGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000599167.5 ENST00000601216.1 ENST00000602252.5 |
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| CDS GCA 72 bp | TTAGATGCAGGCAGGGCAACTCGTCGTGGGCACACGTaGAGGAACGCCAGGTTCCCCTTCTTTCTTCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: LDAGRATRRGHT*RNARFPFFLLR Trigger: CCTCAGAAGAAAGAAGGGGAACCTGGCGTTCCTGCACGTGTGCCCACGACGAGTTGCCCTGCCTGCATCTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000599167.5 ENST00000601216.1 ENST00000602252.5 |
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| CDS CCA 72 bp | ATTGGTCCGATCTGGAATCTGAAGGCTGAGAGAGCGTaGCCTGAGCAACCTGATGGGCCACTGCGCTCACCT | + |
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Preference number: 6 (lower is better) Translates to: IGPIWNLKAERA*PEQPDGPLRSP Trigger: AGGTGAGCGCAGTGGCCCATCAGGTTGCTCAGGCCACGCTCTCTCAGCCTTCAGATTCCAGATCGGACCAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596873.1 |
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| CDS GCA 72 bp | GGGCATCTGAAGACCATCGTGAAAACAAACATCATCTaGCAATGTACCTGGACCTACAAGTTTGCATTCCTA | + |
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Preference number: 6 (lower is better) Translates to: GHLKTIVKTNII*QCTWTYKFAFL Trigger: TAGGAATGCAAACTTGTAGGTCCAGGTACATTGGCAGATGATGTTTGTTTTCACGATGGTCTTCAGATGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599167.5 ENST00000600027.5 |
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