RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPLP1 (Homo sapiens)

Ensembl gene IDs: ENSG00000137818

Ensembl transcript IDs: ENST00000260379.11, ENST00000487304.6, ENST00000488122.2

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TCCACCCCCAGTGTAGGGGACACACCTTATAATCATCAAGTTTACACAGGTAACCACATCCGGCAATGGTaGCAGGGAAAATCCAGCCTG +
Preference number: 2 (lower is better)
Translates to: STPSVGDTPYNHQVYTGNHIRQW*QGKSSL
Trigger: CAGGCTGGATTTTCCCTGCCACCATTGCCGGATGTG...GTTACCTGTGTAAACTTGATGATTATAAGGTGTGTCCCCTACACTGGGGGTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000260379.11
3UTR-3UTR CCA 90 bp TCCACCCCCAGTGTAGGGGACACACCTTATAATCATCAAGTTTACACAGGTAACTCTCACATCCGGCAATaGTGGCAGGGAAAATCCAGC +
Preference number: 2 (lower is better)
Translates to: STPSVGDTPYNHQVYTGNSHIRQ*WQGKSS
Trigger: GCTGGATTTTCCCTGCCACCATTGCCGGATGTGAGA...GTTACCTGTGTAAACTTGATGATTATAAGGTGTGTCCCCTACACTGGGGGTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000260379.11
3UTR-3UTR CAA 90 bp TCCACCCCCAGTGTAGGGGACACACCTTATAATCATCAAGTTTACACAGGTAACTTGTTAGCATCAGGATaGTCTAAATCTCACATCCGG +
Preference number: 3 (lower is better)
Translates to: STPSVGDTPYNHQVYTGNLLASG*SKSHIR
Trigger: CCGGATGTGAGATTTAGACAATCCTGATGCTAACAA...GTTACCTGTGTAAACTTGATGATTATAAGGTGTGTCCCCTACACTGGGGGTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000260379.11
CDS CCA 90 bp GAGCGCCCAGCCTCAAGCGCACTCCATGCCCGCTGGGCCCGCACGTaGTCCCGGGGGCCCAGGACCTGCCCGGAGAGAGGCCCCAGCCCC +
Preference number: 5 (lower is better)
Translates to: ERPASSALHARWART*SRGPRTCPERGPSP
Trigger: GGGGCTGGGGCCTCTCTCCGGGCAGGTCCTGGGCCCCCGGGACCACGTGCGGGCCCAGCGGGCATGGAGTGCGCTTGAGGCTGGGCGCTC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS GCA 90 bp ACGAAGGCTCTTGGAGCCGGAGCGCCCAGCCTCAAGCGCACTCCATaGCCGCTGGGCCCGCACGTGGTCCCGGGGGCCCAGGACCTGCCC +
Preference number: 5 (lower is better)
Translates to: TKALGAGAPSLKRTP*PLGPHVVPGAQDLP
Trigger: GGGCAGGTCCTGGGCCCCCGGGACCACGTGCGGGCCCAGCGGGCATGGAGTGCGCTTGAGGCTGGGCGCTCCGGCTCCAAGAGCCTTCGT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CCA 90 bp CCAGCCCCGAGGAGCGCCCGCCCTATGCGGCCTGTGTTCGCGGCCTaGCCCCGGCCGGAAGTGCTCAGTCGAACGGCCTGGAGCCGGGAA +
Preference number: 5 (lower is better)
Translates to: PAPRSARPMRPVFAA*PRPEVLSRTAWSRE
Trigger: TTCCCGGCTCCAGGCCGTTCGACTGAGCACTTCCGGCCGGGGCCAGGCCGCGAACACAGGCCGCATAGGGCGGGCGCTCCTCGGGGCTGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CCA 90 bp CTCTTGGAGCCGGAGCGCCCAGCCTCAAGCGCACTCCATGCCCGCTaGGCCCGCACGTGGTCCCGGGGGCCCAGGACCTGCCCGGAGAGA +
Preference number: 5 (lower is better)
Translates to: LLEPERPASSALHAR*ARTWSRGPRTCPER
Trigger: TCTCTCCGGGCAGGTCCTGGGCCCCCGGGACCACGTGCGGGCCCAGCGGGCATGGAGTGCGCTTGAGGCTGGGCGCTCCGGCTCCAAGAG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS GCA 90 bp CCCGCCCTATGCGGCCTGTGTTCGCGGCCTGGCCCCGGCCGGAAGTaGTCAGTCGAACGGCCTGGAGCCGGGAACCGCATGGAGAGCCGA +
Preference number: 5 (lower is better)
Translates to: PALCGLCSRPGPGRK*SVERPGAGNRMESR
Trigger: TCGGCTCTCCATGCGGTTCCCGGCTCCAGGCCGTTCGACTGAGCACTTCCGGCCGGGGCCAGGCCGCGAACACAGGCCGCATAGGGCGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CCA 90 bp GTGTTCGCGGCCTGGCCCCGGCCGGAAGTGCTCAGTCGAACGGCCTaGAGCCGGGAACCGCATGGAGAGCCGAAAGTCACCGCCCACAGG +
Preference number: 5 (lower is better)
Translates to: VFAAWPRPEVLSRTA*SREPHGEPKVTAHR
Trigger: CCTGTGGGCGGTGACTTTCGGCTCTCCATGCGGTTCCCGGCTCCAGGCCGTTCGACTGAGCACTTCCGGCCGGGGCCAGGCCGCGAACAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CCA 90 bp AGGGTGCCCAAGCACTGCGGAAGAGCTTTTCTACACGAAGGCTCTTaGAGCCGGAGCGCCCAGCCTCAAGCGCACTCCATGCCCGCTGGG +
Preference number: 5 (lower is better)
Translates to: RVPKHCGRAFLHEGS*SRSAQPQAHSMPAG
Trigger: CCCAGCGGGCATGGAGTGCGCTTGAGGCTGGGCGCTCCGGCTCCAAGAGCCTTCGTGTAGAAAAGCTCTTCCGCAGTGCTTGGGCACCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS GCA 90 bp AGTGTCCCTGAGAGAGACGAGGCACGGGTCAGGGTGCCCAAGCACTaGGGAAGAGCTTTTCTACACGAAGGCTCTTGGAGCCGGAGCGCC +
Preference number: 5 (lower is better)
Translates to: SVPERDEARVRVPKH*GRAFLHEGSWSRSA
Trigger: GGCGCTCCGGCTCCAAGAGCCTTCGTGTAGAAAAGCTCTTCCGCAGTGCTTGGGCACCCTGACCCGTGCCTCGTCTCTCTCAGGGACACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS GCA 90 bp AAAGAGATGTGTGCCAGGCGCCCTGCAATGAGGCGAGCCCATCACTaGTGTTTCACGGGCTGGGACTTGCCTGAGTCACGCGGCTATTTT +
Preference number: 5 (lower is better)
Translates to: KEMCARRPAMRRAHH*CFTGWDLPESRGYF
Trigger: AAAATAGCCGCGTGACTCAGGCAAGTCCCAGCCCGTGAAACAGCAGTGATGGGCTCGCCTCATTGCAGGGCGCCTGGCACACATCTCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS TCA 90 bp GGAATTCAAGGCAATTACACCGAAAGAGGTCCGAGTAAGTGTCCCTaGGAGAGACGAGGCACGGGTCAGGGTGCCCAAGCACTGCGGAAG +
Preference number: 5 (lower is better)
Translates to: GIQGNYTERGPSKCP*ERRGTGQGAQALRK
Trigger: CTTCCGCAGTGCTTGGGCACCCTGACCCGTGCCTCGTCTCTCTCAGGGACACTTACTCGGACCTCTTTCGGTGTAATTGCCTTGAATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CCA 90 bp AAACACCTAGGAGATCCAGCGGCATGTGGGGCGTTATGGCACCGCTaGGGGTACTTTAGCATGTACAACTGCCCTCGTAAATCAGCAGGC +
Preference number: 5 (lower is better)
Translates to: KHLGDPAACGALWHR*GYFSMYNCPRKSAG
Trigger: GCCTGCTGATTTACGAGGGCAGTTGTACATGCTAAAGTACCCCCAGCGGTGCCATAACGCCCCACATGCCGCTGGATCTCCTAGGTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS TCA 90 bp AATGAGGCGAGCCCATCACTGCTGTTTCACGGGCTGGGACTTGCCTaGGTCACGCGGCTATTTTTAAGTTACAAGACCTGGGAGGTGGAG +
Preference number: 5 (lower is better)
Translates to: NEASPSLLFHGLGLA*VTRLFLSYKTWEVE
Trigger: CTCCACCTCCCAGGTCTTGTAACTTAAAAATAGCCGCGTGACTCAGGCAAGTCCCAGCCCGTGAAACAGCAGTGATGGGCTCGCCTCATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS TCA 90 bp ATATTCTATCACAAGCAAAAGAGATGTGTGCCAGGCGCCCTGCAATaGGGCGAGCCCATCACTGCTGTTTCACGGGCTGGGACTTGCCTG +
Preference number: 5 (lower is better)
Translates to: IFYHKQKRCVPGALQ*GEPITAVSRAGTCL
Trigger: CAGGCAAGTCCCAGCCCGTGAAACAGCAGTGATGGGCTCGCCTCATTGCAGGGCGCCTGGCACACATCTCTTTTGCTTGTGATAGAATAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS GCA 90 bp TGTGGGGCGTTATGGCACCGCTGGGGGTACTTTAGCATGTACAACTaGCCTCGTAAATCAGCAGGCCTTACCACAATCACTTTGCCACCA +
Preference number: 5 (lower is better)
Translates to: CGALWHRWGYFSMYN*PRKSAGLTTITLPP
Trigger: TGGTGGCAAAGTGATTGTGGTAAGGCCTGCTGATTTACGAGGGCAGTTGTACATGCTAAAGTACCCCCAGCGGTGCCATAACGCCCCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS GCA 90 bp ATGTTTAACCAGCTCAAATATTCTATCACAAGCAAAAGAGATGTGTaGCAGGCGCCCTGCAATGAGGCGAGCCCATCACTGCTGTTTCAC +
Preference number: 5 (lower is better)
Translates to: MFNQLKYSITSKRDV*QAPCNEASPSLLFH
Trigger: GTGAAACAGCAGTGATGGGCTCGCCTCATTGCAGGGCGCCTGGCACACATCTCTTTTGCTTGTGATAGAATATTTGAGCTGGTTAAACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS-3UTR CAA 90 bp CAGGATTGTCTAAATCTCACATCCGGCAATGGTGGCAGGGAAAATCCAGCCTGTAAAACTCCCAAACATTaGGTGAGACATTACATAGCT +
Preference number: 5 (lower is better)
Translates to: QDCLNLTSGNGGRENPACKTPKH*VRHYIA
Trigger: AGCTATGTAATGTCTCACCAAATGTTTGGGAGTTTT...ACAGGCTGGATTTTCCCTGCCACCATTGCCGGATGTGAGATTTAGACAATCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000260379.11
CDS TCA 90 bp TCAGAGCAAAAGGGAAACCAGAGTCTGATAAGGAAACGTAAGACTTaGCAAGCTGAAATCTTATTAGCTCCTAGAGATATACATGCAACG +
Preference number: 5 (lower is better)
Translates to: SEQKGNQSLIRKRKT*QAEILLAPRDIHAT
Trigger: CGTTGCATGTATATCTCTAGGAGCTAATAAGATTTCAGCTTGTCAAGTCTTACGTTTCCTTATCAGACTCTGGTTTCCCTTTTGCTCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS TCA 90 bp TTTATTAGTCTTTTATATCCCAACACACAGTACCTACTGTGTCAATaGAGTCCGCTAAACCCAAATGTCCATCAAACCATAGGTTTAATG +
Preference number: 5 (lower is better)
Translates to: FISLLYPNTQYLLCQ*SPLNPNVHQTIGLM
Trigger: CATTAAACCTATGGTTTGATGGACATTTGGGTTTAGCGGACTTCATTGACACAGTAGGTACTGTGTGTTGGGATATAAAAGACTAATAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS CCA 72 bp CCGGAGCGCCCAGCCTCAAGCGCACTCCATGCCCGCTaGGCCCGCACGTGGTCCCGGGGGCCCAGGACCTGC +
Preference number: 6 (lower is better)
Translates to: PERPASSALHAR*ARTWSRGPRTC
Trigger: GCAGGTCCTGGGCCCCCGGGACCACGTGCGGGCCCAGCGGGCATGGAGTGCGCTTGAGGCTGGGCGCTCCGG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS GCA 72 bp CTTGGAGCCGGAGCGCCCAGCCTCAAGCGCACTCCATaGCCGCTGGGCCCGCACGTGGTCCCGGGGGCCCAG +
Preference number: 6 (lower is better)
Translates to: LGAGAPSLKRTP*PLGPHVVPGAQ
Trigger: CTGGGCCCCCGGGACCACGTGCGGGCCCAGCGGGCATGGAGTGCGCTTGAGGCTGGGCGCTCCGGCTCCAAG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CCA 72 bp AGGAGCGCCCGCCCTATGCGGCCTGTGTTCGCGGCCTaGCCCCGGCCGGAAGTGCTCAGTCGAACGGCCTGG +
Preference number: 6 (lower is better)
Translates to: RSARPMRPVFAA*PRPEVLSRTAW
Trigger: CCAGGCCGTTCGACTGAGCACTTCCGGCCGGGGCCAGGCCGCGAACACAGGCCGCATAGGGCGGGCGCTCCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CCA 72 bp AGTGCTCAGTCGAACGGCCTGGAGCCGGGAACCGCATaGAGAGCCGAAAGTCACCGCCCACAGGCAGCCCGG +
Preference number: 6 (lower is better)
Translates to: SAQSNGLEPGTA*RAESHRPQAAR
Trigger: CCGGGCTGCCTGTGGGCGGTGACTTTCGGCTCTCCATGCGGTTCCCGGCTCCAGGCCGTTCGACTGAGCACT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CAA 90 bp CAGGGTGCCCAAGCACTGCGGAAGAGCTTTTCTACACGAAGGCTCTaGGAGCCGGAGCGCCCAGCCTCAAGCGCACTCCATGCCCGCTGG +
Preference number: 6 (lower is better)
Translates to: QGAQALRKSFSTRRL*EPERPASSALHARW
Trigger: CCAGCGGGCATGGAGTGCGCTTGAGGCTGGGCGCTCCGGCTCCAAGAGCCTTCGTGTAGAAAAGCTCTTCCGCAGTGCTTGGGCACCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS TCA 72 bp CACAAGCAAAAGAGATGTGTGCCAGGCGCCCTGCAATaGGGCGAGCCCATCACTGCTGTTTCACGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: HKQKRCVPGALQ*GEPITAVSRAG
Trigger: CCCAGCCCGTGAAACAGCAGTGATGGGCTCGCCTCATTGCAGGGCGCCTGGCACACATCTCTTTTGCTTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS GCA 72 bp GAGAGAGACGAGGCACGGGTCAGGGTGCCCAAGCACTaGGGAAGAGCTTTTCTACACGAAGGCTCTTGGAGC +
Preference number: 6 (lower is better)
Translates to: ERDEARVRVPKH*GRAFLHEGSWS
Trigger: GCTCCAAGAGCCTTCGTGTAGAAAAGCTCTTCCGCAGTGCTTGGGCACCCTGACCCGTGCCTCGTCTCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CCA 72 bp AAGCACTGCGGAAGAGCTTTTCTACACGAAGGCTCTTaGAGCCGGAGCGCCCAGCCTCAAGCGCACTCCATG +
Preference number: 6 (lower is better)
Translates to: KHCGRAFLHEGS*SRSAQPQAHSM
Trigger: CATGGAGTGCGCTTGAGGCTGGGCGCTCCGGCTCCAAGAGCCTTCGTGTAGAAAAGCTCTTCCGCAGTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CAA 72 bp CAAGCACTGCGGAAGAGCTTTTCTACACGAAGGCTCTaGGAGCCGGAGCGCCCAGCCTCAAGCGCACTCCAT +
Preference number: 6 (lower is better)
Translates to: QALRKSFSTRRL*EPERPASSALH
Trigger: ATGGAGTGCGCTTGAGGCTGGGCGCTCCGGCTCCAAGAGCCTTCGTGTAGAAAAGCTCTTCCGCAGTGCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS TCA 72 bp GGCAATTACACCGAAAGAGGTCCGAGTAAGTGTCCCTaGGAGAGACGAGGCACGGGTCAGGGTGCCCAAGCA +
Preference number: 6 (lower is better)
Translates to: GNYTERGPSKCP*ERRGTGQGAQA
Trigger: TGCTTGGGCACCCTGACCCGTGCCTCGTCTCTCTCAGGGACACTTACTCGGACCTCTTTCGGTGTAATTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS CCA 72 bp GGAGATCCAGCGGCATGTGGGGCGTTATGGCACCGCTaGGGGTACTTTAGCATGTACAACTGCCCTCGTAAA +
Preference number: 6 (lower is better)
Translates to: GDPAACGALWHR*GYFSMYNCPRK
Trigger: TTTACGAGGGCAGTTGTACATGCTAAAGTACCCCCAGCGGTGCCATAACGCCCCACATGCCGCTGGATCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS CCA 72 bp AAACACCTAGGAGATCCAGCGGCATGTGGGGCGTTATaGCACCGCTGGGGGTACTTTAGCATGTACAACTGC +
Preference number: 6 (lower is better)
Translates to: KHLGDPAACGAL*HRWGYFSMYNC
Trigger: GCAGTTGTACATGCTAAAGTACCCCCAGCGGTGCCATAACGCCCCACATGCCGCTGGATCTCCTAGGTGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS GCA 72 bp GGCGAGCCCATCACTGCTGTTTCACGGGCTGGGACTTaGCTGAGTCACGCGGCTATTTTTAAGTTACAAGAC +
Preference number: 6 (lower is better)
Translates to: GEPITAVSRAGT*LSHAAIFKLQD
Trigger: GTCTTGTAACTTAAAAATAGCCGCGTGACTCAGGCAAGTCCCAGCCCGTGAAACAGCAGTGATGGGCTCGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS TCA 72 bp AGCCCATCACTGCTGTTTCACGGGCTGGGACTTGCCTaGGTCACGCGGCTATTTTTAAGTTACAAGACCTGG +
Preference number: 6 (lower is better)
Translates to: SPSLLFHGLGLA*VTRLFLSYKTW
Trigger: CCAGGTCTTGTAACTTAAAAATAGCCGCGTGACTCAGGCAAGTCCCAGCCCGTGAAACAGCAGTGATGGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000488122.2
CDS GCA 72 bp GCCCTCGTAAATCAGCAGGCCTTACCACAATCACTTTaGCACCATCACCTTACCTTTGCAAACAAGCCAGGC +
Preference number: 6 (lower is better)
Translates to: ALVNQQALPQSL*HHHLTFANKPG
Trigger: GCCTGGCTTGTTTGCAAAGGTAAGGTGATGGTGGCAAAGTGATTGTGGTAAGGCCTGCTGATTTACGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS GCA 72 bp TTATGGCACCGCTGGGGGTACTTTAGCATGTACAACTaGCCTCGTAAATCAGCAGGCCTTACCACAATCACT +
Preference number: 6 (lower is better)
Translates to: LWHRWGYFSMYN*PRKSAGLTTIT
Trigger: AGTGATTGTGGTAAGGCCTGCTGATTTACGAGGGCAGTTGTACATGCTAAAGTACCCCCAGCGGTGCCATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS GCA 72 bp ATGTTGACGTTGGCCAGGGCCTGCAATACATGTGCATaGATAGGTAAACGCCCAGTTCTGTCCTTGTTAAGC +
Preference number: 6 (lower is better)
Translates to: MLTLARACNTCA*IGKRPVLSLLS
Trigger: GCTTAACAAGGACAGAACTGGGCGTTTACCTATGCATGCACATGTATTGCAGGCCCTGGCCAACGTCAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS CAA 72 bp TGCCCTCGTAAATCAGCAGGCCTTACCACAATCACTTaGCCACCATCACCTTACCTTTGCAAACAAGCCAGG +
Preference number: 6 (lower is better)
Translates to: CPRKSAGLTTIT*PPSPYLCKQAR
Trigger: CCTGGCTTGTTTGCAAAGGTAAGGTGATGGTGGCAAAGTGATTGTGGTAAGGCCTGCTGATTTACGAGGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS CCA 72 bp ATTAGTGGAAGGTCCTGGAACCAATACCCCAGACACTaGCTTTTCTTTGCTAACAGCCAAGACTTAGGTTAC +
Preference number: 6 (lower is better)
Translates to: ISGRSWNQYPRH*LFFANSQDLGY
Trigger: GTAACCTAAGTCTTGGCTGTTAGCAAAGAAAAGCCAGTGTCTGGGGTATTGGTTCCAGGACCTTCCACTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS CAA 72 bp ACATGTGCATGCATAGGTAAACGCCCAGTTCTGTCCTaGTTAAGCACTCACGCAGCCAAAAACGAAAAGTAT +
Preference number: 6 (lower is better)
Translates to: TCACIGKRPVLS*LSTHAAKNEKY
Trigger: ATACTTTTCGTTTTTGGCTGCGTGAGTGCTTAACAAGGACAGAACTGGGCGTTTACCTATGCATGCACATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS CAA 90 bp AACAGCCAAGACTTAGGTTACAGGGCAACGCACTACTGTTCAGCTTaGAATCTGATAATTACATTCCTATATGTTAAGAACCTCCTGAGG +
Preference number: 6 (lower is better)
Translates to: NSQDLGYRATHYCSA*NLIITFLYVKNLLR
Trigger: CCTCAGGAGGTTCTTAACATATAGGAATGTAATTATCAGATTCAAAGCTGAACAGTAGTGCGTTGCCCTGTAACCTAAGTCTTGGCTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS TCA 72 bp CTTTTATATCCCAACACACAGTACCTACTGTGTCAATaGAGTCCGCTAAACCCAAATGTCCATCAAACCATA +
Preference number: 6 (lower is better)
Translates to: LLYPNTQYLLCQ*SPLNPNVHQTI
Trigger: TATGGTTTGATGGACATTTGGGTTTAGCGGACTTCATTGACACAGTAGGTACTGTGTGTTGGGATATAAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS CAA 72 bp GACTTAGGTTACAGGGCAACGCACTACTGTTCAGCTTaGAATCTGATAATTACATTCCTATATGTTAAGAAC +
Preference number: 6 (lower is better)
Translates to: DLGYRATHYCSA*NLIITFLYVKN
Trigger: GTTCTTAACATATAGGAATGTAATTATCAGATTCAAAGCTGAACAGTAGTGCGTTGCCCTGTAACCTAAGTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487304.6
CDS CCA 72 bp ATATGCAAATACATTTATATAAGAGATGGAACATCCTaGGATTTTGTTATTAGTGGAAGGTCCTGGAACCAA +
Preference number: 6 (lower is better)
Translates to: ICKYIYIRDGTS*DFVISGRSWNQ
Trigger: TTGGTTCCAGGACCTTCCACTAATAACAAAATCCCAGGATGTTCCATCTCTTATATAAATGTATTTGCATAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000487304.6