RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPL6 (Homo sapiens)

Ensembl gene IDs: ENSG00000089009

Ensembl transcript IDs: ENST00000424576.6, ENST00000546368.2, ENST00000548343.1, ENST00000549847.5, ENST00000550566.6, ENST00000551041.6, ENST00000551291.6, ENST00000552455.5, ENST00000553205.1, ENST00000553213.2

Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGCGGCCGCGGTTTCCAGGAGGAAGCAAGGATGCTTTGGACACTGTaGGTGGCGCCTCCGCGGAGCCCCCGCGCTGCCATTCCCGGCCGT +
Preference number: 5 (lower is better)
Translates to: GGRGFQEEARMLWTL*VAPPRSPRAAIPGR
Trigger: ACGGCCGGGAATGGCAGCGCGGGGGCTCCGCGGAGGCGCCACGCACAGTGTCCAAAGCATCCTTGCTTCCTCCTGGAAACCGCGGCCGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551291.6
CDS CCA 90 bp GCCGCGGTTTCCAGGAGGAAGCAAGGATGCTTTGGACACTGTGCGTaGCGCCTCCGCGGAGCCCCCGCGCTGCCATTCCCGGCCGTCGCT +
Preference number: 5 (lower is better)
Translates to: AAVSRRKQGCFGHCA*RLRGAPALPFPAVA
Trigger: AGCGACGGCCGGGAATGGCAGCGCGGGGGCTCCGCGGAGGCGCCACGCACAGTGTCCAAAGCATCCTTGCTTCCTCCTGGAAACCGCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551291.6
CDS GCA 90 bp GGTTCTGATTCACTGGCGGCCGCGGTTTCCAGGAGGAAGCAAGGATaGTTTGGACACTGTGCGTGGCGCCTCCGCGGAGCCCCCGCGCTG +
Preference number: 5 (lower is better)
Translates to: GSDSLAAAVSRRKQG*FGHCAWRLRGAPAL
Trigger: CAGCGCGGGGGCTCCGCGGAGGCGCCACGCACAGTGTCCAAAGCATCCTTGCTTCCTCCTGGAAACCGCGGCCGCCAGTGAATCAGAACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551291.6
CDS CCA 90 bp AGTGCGGAACCCCAACGTGGCTGCGACAGGCTCAGTGTCATCCTCTaGAACCCAGGACCAGGAACACAGTGCACGCGCCGTCTCCCCGCT +
Preference number: 5 (lower is better)
Translates to: SAEPQRGCDRLSVIL*NPGPGTQCTRRLPA
Trigger: AGCGGGGAGACGGCGCGTGCACTGTGTTCCTGGTCCTGGGTTCCAGAGGATGACACTGAGCCTGTCGCAGCCACGTTGGGGTTCCGCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000549847.5
ENST00000550566.6
CDS CCA 90 bp TGCTACGGGTCCCCGAAAGGGCCTCGTTCCCCCAGCCCAAGAGAGTaGCGAAGAACCGGAGGGAGCCACTACGGCATTCTACCTCACCCT +
Preference number: 5 (lower is better)
Translates to: CYGSPKGPRSPSPRE*RRTGGSHYGILPHP
Trigger: AGGGTGAGGTAGAATGCCGTAGTGGCTCCCTCCGGTTCTTCGCCACTCTCTTGGGCTGGGGGAACGAGGCCCTTTCGGGGACCCGTAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS GCA 90 bp GACAGGCTCAGTGTCATCCTCTGGAACCCAGGACCAGGAACACAGTaGACGCGCCGTCTCCCCGCTTCCTCTAACACCCACCAGTCTGCT +
Preference number: 5 (lower is better)
Translates to: DRLSVILWNPGPGTQ*TRRLPASSNTHQSA
Trigger: AGCAGACTGGTGGGTGTTAGAGGAAGCGGGGAGACGGCGCGTGCACTGTGTTCCTGGTCCTGGGTTCCAGAGGATGACACTGAGCCTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS CCA 90 bp GCTGGGAGACGCGAAACCTTTTGGCTTCAGTGCGGAACCCCAACGTaGCTGCGACAGGCTCAGTGTCATCCTCTGGAACCCAGGACCAGG +
Preference number: 5 (lower is better)
Translates to: AGRRETFWLQCGTPT*LRQAQCHPLEPRTR
Trigger: CCTGGTCCTGGGTTCCAGAGGATGACACTGAGCCTGTCGCAGCCACGTTGGGGTTCCGCACTGAAGCCAAAAGGTTTCGCGTCTCCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS GCA 90 bp GGAGACGCGAAACCTTTTGGCTTCAGTGCGGAACCCCAACGTGGCTaGGACAGGCTCAGTGTCATCCTCTGGAACCCAGGACCAGGAACA +
Preference number: 5 (lower is better)
Translates to: GDAKPFGFSAEPQRG*DRLSVILWNPGPGT
Trigger: TGTTCCTGGTCCTGGGTTCCAGAGGATGACACTGAGCCTGTCGCAGCCACGTTGGGGTTCCGCACTGAAGCCAAAAGGTTTCGCGTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS GCA 90 bp TTTCACCCGCCATCTTTTGGCTTCAGTGCGGAACCCCAACGTGGCTaGGACAGGCTCAGTGTCATCCTCTGGAACCCAGGACCAGGAACA +
Preference number: 5 (lower is better)
Translates to: FHPPSFGFSAEPQRG*DRLSVILWNPGPGT
Trigger: TGTTCCTGGTCCTGGGTTCCAGAGGATGACACTGAGCCTGTCGCAGCCACGTTGGGGTTCCGCACTGAAGCCAAAAGATGGCGGGTGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000549847.5
CDS TCA 90 bp CGACTGGATGCCCTCCAGGTTCGGATGGCGAAGGATTGGGAGTCCTaGACTCAAGTCTTGCAGACAGGCCCGCGATTCTTACCTTGCAAG +
Preference number: 5 (lower is better)
Translates to: RLDALQVRMAKDWES*TQVLQTGPRFLPCK
Trigger: CTTGCAAGGTAAGAATCGCGGGCCTGTCTGCAAGACTTGAGTTCAGGACTCCCAATCCTTCGCCATCCGAACCTGGAGGGCATCCAGTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424576.6
CDS TCA 90 bp CCCGCCATCCTCTTTGTGCCCTGCCGCAAACCCAAACAACAAAAATaGAGCGTCTGGAAGGCCTCTCAGTTAGCCTTGGACATGTCCGAC +
Preference number: 5 (lower is better)
Translates to: PAILFVPCRKPKQQK*SVWKASQLALDMSD
Trigger: GTCGGACATGTCCAAGGCTAACTGAGAGGCCTTCCAGACGCTTCATTTTTGTTGTTTGGGTTTGCGGCAGGGCACAAAGAGGATGGCGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000424576.6
ENST00000552455.5
CDS TCA 90 bp TACCTCACCCTCTTTGTGCCCTGCCGCAAACCCAAACAACAAAAATaGAGCGTCTGGAAGGCCTCTCAGTTAGCCTTGGACATGTCCGAC +
Preference number: 5 (lower is better)
Translates to: YLTLFVPCRKPKQQK*SVWKASQLALDMSD
Trigger: GTCGGACATGTCCAAGGCTAACTGAGAGGCCTTCCAGACGCTTCATTTTTGTTGTTTGGGTTTGCGGCAGGGCACAAAGAGGGTGAGGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS TCA 90 bp AAACTCGATTTAGGAATTGCGGACACAAACGGAATCAGCCCAAATTaGGCCAGAGAAAAAGATCGCAAAGACCAAGAGGCGACTTCCGGT +
Preference number: 5 (lower is better)
Translates to: KLDLGIADTNGISPN*AREKDRKDQEATSG
Trigger: ACCGGAAGTCGCCTCTTGGTCTTTGCGATCTTTTTCTCTGGCTCAATTTGGGCTGATTCCGTTTGTGTCCGCAATTCCTAAATCGAGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS GCA 90 bp ACCCTTAAGACCAGTGTCTCTTTTCAAGAAACTCGATTTAGGAATTaGGGACACAAACGGAATCAGCCCAAATTGAGCCAGAGAAAAAGA +
Preference number: 5 (lower is better)
Translates to: TLKTSVSFQETRFRN*GHKRNQPKLSQRKR
Trigger: TCTTTTTCTCTGGCTCAATTTGGGCTGATTCCGTTTGTGTCCGCAATTCCTAAATCGAGTTTCTTGAAAAGAGACACTGGTCTTAAGGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS GCA 90 bp CAGCAACAAGTCTTACTCCCACTTCATCCACAAAGGAAAACAAATTaGATAAAGCCAGACACTAGGACTGGCAGATCATTTATTGCAGAA +
Preference number: 5 (lower is better)
Translates to: QQQVLLPLHPQRKTN*IKPDTRTGRSFIAE
Trigger: TTCTGCAATAAATGATCTGCCAGTCCTAGTGTCTGGCTTTATGCAATTTGTTTTCCTTTGTGGATGAAGTGGGAGTAAGACTTGTTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546368.2
CDS GCA 90 bp ATGAGATGTGTGCTCAAGCAAAGAAAGCATCAAGCAAGTCACCTTTaGAATCTTGAGCAAAAACTAAACCTCAGAGATTACACGTGTGAC +
Preference number: 5 (lower is better)
Translates to: MRCVLKQRKHQASHL*NLEQKLNLRDYTCD
Trigger: GTCACACGTGTAATCTCTGAGGTTTAGTTTTTGCTCAAGATTGCAAAGGTGACTTGCTTGATGCTTTCTTTGCTTGAGCACACATCTCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546368.2
CDS TCA 90 bp CAACTATACCATATCATTAGTGCAGTCTCACTTTCACCACAAACATaGTCACCTAATGGGAAAACGAGTTCACAAAACAACTGTCATCTT +
Preference number: 5 (lower is better)
Translates to: QLYHIISAVSLSPQT*SPNGKTSSQNNCHL
Trigger: AAGATGACAGTTGTTTTGTGAACTCGTTTTCCCATTAGGTGATCATGTTTGTGGTGAAAGTGAGACTGCACTAATGATATGGTATAGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546368.2
CDS CCA 72 bp TCCAGGAGGAAGCAAGGATGCTTTGGACACTGTGCGTaGCGCCTCCGCGGAGCCCCCGCGCTGCCATTCCCG +
Preference number: 6 (lower is better)
Translates to: SRRKQGCFGHCA*RLRGAPALPFP
Trigger: CGGGAATGGCAGCGCGGGGGCTCCGCGGAGGCGCCACGCACAGTGTCCAAAGCATCCTTGCTTCCTCCTGGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551291.6
CDS CAA 90 bp CTGATTCACTGGCGGCCGCGGTTTCCAGGAGGAAGCAAGGATGCTTaGGACACTGTGCGTGGCGCCTCCGCGGAGCCCCCGCGCTGCCAT +
Preference number: 6 (lower is better)
Translates to: LIHWRPRFPGGSKDA*DTVRGASAEPPRCH
Trigger: ATGGCAGCGCGGGGGCTCCGCGGAGGCGCCACGCACAGTGTCCAAAGCATCCTTGCTTCCTCCTGGAAACCGCGGCCGCCAGTGAATCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551291.6
CDS CCA 72 bp CCCCAACGTGGCTGCGACAGGCTCAGTGTCATCCTCTaGAACCCAGGACCAGGAACACAGTGCACGCGCCGT +
Preference number: 6 (lower is better)
Translates to: PQRGCDRLSVIL*NPGPGTQCTRR
Trigger: ACGGCGCGTGCACTGTGTTCCTGGTCCTGGGTTCCAGAGGATGACACTGAGCCTGTCGCAGCCACGTTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000549847.5
ENST00000550566.6
CDS CAA 90 bp CAAGAGGCGACTTCCGGTCGGGGACGCTGGGAGACGCGAAACCTTTaGGCTTCAGTGCGGAACCCCAACGTGGCTGCGACAGGCTCAGTG +
Preference number: 6 (lower is better)
Translates to: QEATSGRGRWETRNL*ASVRNPNVAATGSV
Trigger: CACTGAGCCTGTCGCAGCCACGTTGGGGTTCCGCACTGAAGCCAAAAGGTTTCGCGTCTCCCAGCGTCCCCGACCGGAAGTCGCCTCTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS CCA 72 bp TCCCCGAAAGGGCCTCGTTCCCCCAGCCCAAGAGAGTaGCGAAGAACCGGAGGGAGCCACTACGGCATTCTA +
Preference number: 6 (lower is better)
Translates to: SPKGPRSPSPRE*RRTGGSHYGIL
Trigger: TAGAATGCCGTAGTGGCTCCCTCCGGTTCTTCGCCACTCTCTTGGGCTGGGGGAACGAGGCCCTTTCGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS CAA 72 bp ACTTCCGGTCGGGGACGCTGGGAGACGCGAAACCTTTaGGCTTCAGTGCGGAACCCCAACGTGGCTGCGACA +
Preference number: 6 (lower is better)
Translates to: TSGRGRWETRNL*ASVRNPNVAAT
Trigger: TGTCGCAGCCACGTTGGGGTTCCGCACTGAAGCCAAAAGGTTTCGCGTCTCCCAGCGTCCCCGACCGGAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS GCA 72 bp AGTGTCATCCTCTGGAACCCAGGACCAGGAACACAGTaGACGCGCCGTCTCCCCGCTTCCTCTAACACCCAC +
Preference number: 6 (lower is better)
Translates to: SVILWNPGPGTQ*TRRLPASSNTH
Trigger: GTGGGTGTTAGAGGAAGCGGGGAGACGGCGCGTGCACTGTGTTCCTGGTCCTGGGTTCCAGAGGATGACACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS CCA 72 bp CCCGCCATCTTTTGGCTTCAGTGCGGAACCCCAACGTaGCTGCGACAGGCTCAGTGTCATCCTCTGGAACCC +
Preference number: 6 (lower is better)
Translates to: PAIFWLQCGTPT*LRQAQCHPLEP
Trigger: GGGTTCCAGAGGATGACACTGAGCCTGTCGCAGCCACGTTGGGGTTCCGCACTGAAGCCAAAAGATGGCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000549847.5
CDS CCA 72 bp CGCAAAGACCAAGAGGCGACTTCCGGTCGGGGACGCTaGGAGACGCGAAACCTTTTGGCTTCAGTGCGGAAC +
Preference number: 6 (lower is better)
Translates to: RKDQEATSGRGR*ETRNLLASVRN
Trigger: GTTCCGCACTGAAGCCAAAAGGTTTCGCGTCTCCCAGCGTCCCCGACCGGAAGTCGCCTCTTGGTCTTTGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS CCA 72 bp CGCGAAACCTTTTGGCTTCAGTGCGGAACCCCAACGTaGCTGCGACAGGCTCAGTGTCATCCTCTGGAACCC +
Preference number: 6 (lower is better)
Translates to: RETFWLQCGTPT*LRQAQCHPLEP
Trigger: GGGTTCCAGAGGATGACACTGAGCCTGTCGCAGCCACGTTGGGGTTCCGCACTGAAGCCAAAAGGTTTCGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS CAA 72 bp TCGACTGGATGCCCTCCAGGTTCGGATGGCGAAGGATaGGGAGTCCTGAACTCAAGTCTTGCAGACAGGCCC +
Preference number: 6 (lower is better)
Translates to: STGCPPGSDGEG*GVLNSSLADRP
Trigger: GGGCCTGTCTGCAAGACTTGAGTTCAGGACTCCCAATCCTTCGCCATCCGAACCTGGAGGGCATCCAGTCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000424576.6
ENST00000552455.5
CDS TCA 72 bp GCCCTCCAGGTTCGGATGGCGAAGGATTGGGAGTCCTaGACTCAAGTCTTGCAGACAGGCCCGCGATTCTTA +
Preference number: 6 (lower is better)
Translates to: ALQVRMAKDWES*TQVLQTGPRFL
Trigger: TAAGAATCGCGGGCCTGTCTGCAAGACTTGAGTTCAGGACTCCCAATCCTTCGCCATCCGAACCTGGAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000424576.6
ENST00000552455.5
CDS CCA 72 bp CCTGTAGGTGTCGACTGGATGCCCTCCAGGTTCGGATaGCGAAGGATTGGGAGTCCTGAACTCAAGTCTTGC +
Preference number: 6 (lower is better)
Translates to: PVGVDWMPSRFG*RRIGSPELKSC
Trigger: GCAAGACTTGAGTTCAGGACTCCCAATCCTTCGCCATCCGAACCTGGAGGGCATCCAGTCGACACCTACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000424576.6
ENST00000550566.6
ENST00000552455.5
ENST00000553213.2
CDS CCA 72 bp TCAACTTTTTCACCCGCCATCCCTGTAGGTGTCGACTaGATGCCCTCCAGGTTCGGATGGCGAAGGATTGGG +
Preference number: 6 (lower is better)
Translates to: STFSPAIPVGVD*MPSRFGWRRIG
Trigger: CCCAATCCTTCGCCATCCGAACCTGGAGGGCATCCAGTCGACACCTACAGGGATGGCGGGTGAAAAAGTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000553213.2
CDS CAA 90 bp GCGAAGAACCGGAGGGAGCCACTACGGCATTCTACCTCACCCTCTTaGTGCCCTGCCGCAAACCCAAACAACAAAAATGAAGCGTCTGGA +
Preference number: 6 (lower is better)
Translates to: AKNRREPLRHSTSPS*CPAANPNNKNEASG
Trigger: TCCAGACGCTTCATTTTTGTTGTTTGGGTTTGCGGCAGGGCACAAAGAGGGTGAGGTAGAATGCCGTAGTGGCTCCCTCCGGTTCTTCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS GCA 72 bp AGGGAGCCACTACGGCATTCTACCTCACCCTCTTTGTaGCCTGCCGCAAACCCAAACAACAAAAATGAAGCG +
Preference number: 6 (lower is better)
Translates to: REPLRHSTSPSL*PAANPNNKNEA
Trigger: CGCTTCATTTTTGTTGTTTGGGTTTGCGGCAGGGCACAAAGAGGGTGAGGTAGAATGCCGTAGTGGCTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS CAA 72 bp CGGAGGGAGCCACTACGGCATTCTACCTCACCCTCTTaGTGCCCTGCCGCAAACCCAAACAACAAAAATGAA +
Preference number: 6 (lower is better)
Translates to: RREPLRHSTSPS*CPAANPNNKNE
Trigger: TTCATTTTTGTTGTTTGGGTTTGCGGCAGGGCACAAAGAGGGTGAGGTAGAATGCCGTAGTGGCTCCCTCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS CAA 90 bp CCCGTCCTCCGGCCTGGCCTACAGAATGAGACTCTGTCTTCTAGCTaGCGTTTTCCATTTTCCTCCATTCGTTTCTTTCTGGTTGCTAGA +
Preference number: 6 (lower is better)
Translates to: PVLRPGLQNETLSSS*RFPFSSIRFFLVAR
Trigger: TCTAGCAACCAGAAAGAAACGAATGGAGGAAAATGGAAAACGCAAGCTAGAAGACAGAGTCTCATTCTGTAGGCCAGGCCGGAGGACGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000551291.6
CDS CAA 90 bp GAAACTCGATTTAGGAATTGCGGACACAAACGGAATCAGCCCAAATaGAGCCAGAGAAAAAGATCGCAAAGACCAAGAGGCGACTTCCGG +
Preference number: 6 (lower is better)
Translates to: ETRFRNCGHKRNQPK*SQRKRSQRPRGDFR
Trigger: CCGGAAGTCGCCTCTTGGTCTTTGCGATCTTTTTCTCTGGCTCAATTTGGGCTGATTCCGTTTGTGTCCGCAATTCCTAAATCGAGTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS TCA 72 bp TTAGGAATTGCGGACACAAACGGAATCAGCCCAAATTaGGCCAGAGAAAAAGATCGCAAAGACCAAGAGGCG +
Preference number: 6 (lower is better)
Translates to: LGIADTNGISPN*AREKDRKDQEA
Trigger: CGCCTCTTGGTCTTTGCGATCTTTTTCTCTGGCTCAATTTGGGCTGATTCCGTTTGTGTCCGCAATTCCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS GCA 72 bp ACCAGTGTCTCTTTTCAAGAAACTCGATTTAGGAATTaGGGACACAAACGGAATCAGCCCAAATTGAGCCAG +
Preference number: 6 (lower is better)
Translates to: TSVSFQETRFRN*GHKRNQPKLSQ
Trigger: CTGGCTCAATTTGGGCTGATTCCGTTTGTGTCCGCAATTCCTAAATCGAGTTTCTTGAAAAGAGACACTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550566.6
CDS CCA 72 bp TTCAGATCGAAACCACCTGCTTCATGGCTGTGTCTCTaGGAATCATTTAGCCTTTTTCTGGTTCTGATTCAC +
Preference number: 6 (lower is better)
Translates to: FRSKPPASWLCL*ESFSLFLVLIH
Trigger: GTGAATCAGAACCAGAAAAAGGCTAAATGATTCCCAGAGACACAGCCATGAAGCAGGTGGTTTCGATCTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551291.6
CDS TCA 72 bp TCAAGTAAAGTGTGTCCATATCCTAGCCACTTCATCTaGTCCTCACAGCAACAAGTCTTACTCCCACTTCAT +
Preference number: 6 (lower is better)
Translates to: SSKVCPYPSHFI*SSQQQVLLPLH
Trigger: ATGAAGTGGGAGTAAGACTTGTTGCTGTGAGGATCAGATGAAGTGGCTAGGATATGGACACACTTTACTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546368.2
CDS TCA 72 bp TCTCAAACTCTACCCATTCTACTCCAACCTTCACTATaGCTCATTTGGGGTTTGTCTCCCCAATACACTATA +
Preference number: 6 (lower is better)
Translates to: SQTLPILLQPSL*LIWGLSPQYTI
Trigger: TATAGTGTATTGGGGAGACAAACCCCAAATGAGTCATAGTGAAGGTTGGAGTAGAATGGGTAGAGTTTGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000548343.1
CDS CCA 72 bp ATAATGAAAATTACAGAGCAAATCCTGAGATTACATTaGGTCTTGTGTGTGGTAAAGGGGGCCAAGAAACAC +
Preference number: 6 (lower is better)
Translates to: IMKITEQILRLH*VLCVVKGAKKH
Trigger: GTGTTTCTTGGCCCCCTTTACCACACACAAGACCCAATGTAATCTCAGGATTTGCTCTGTAATTTTCATTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546368.2
CDS CAA 72 bp CACCATGGATTACACTTCTTATTTGCAACAACTAAGTaGTATCTTGCAGATCATTTCCCCTTGCCCCAAACA +
Preference number: 6 (lower is better)
Translates to: HHGLHFLFATTK*YLADHFPLPQT
Trigger: TGTTTGGGGCAAGGGGAAATGATCTGCAAGATACAACTTAGTTGTTGCAAATAAGAAGTGTAATCCATGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000551041.6
CDS TCA 72 bp CATATCATTAGTGCAGTCTCACTTTCACCACAAACATaGTCACCTAATGGGAAAACGAGTTCACAAAACAAC +
Preference number: 6 (lower is better)
Translates to: HIISAVSLSPQT*SPNGKTSSQNN
Trigger: GTTGTTTTGTGAACTCGTTTTCCCATTAGGTGATCATGTTTGTGGTGAAAGTGAGACTGCACTAATGATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546368.2
CDS CAA 72 bp TCTACCCATTCTACTCCAACCTTCACTATGACTCATTaGGGGTTTGTCTCCCCAATACACTATAAACTTTTT +
Preference number: 6 (lower is better)
Translates to: STHSTPTFTMTH*GFVSPIHYKLF
Trigger: AAAAAGTTTATAGTGTATTGGGGAGACAAACCCCAAATGAGTCATAGTGAAGGTTGGAGTAGAATGGGTAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000548343.1
CDS CCA 72 bp CAGACTGCCAAAAGAACTACTCAATTTAGAAGAATCTaGAATACTAAGTATCTCCCAGCATTCCTCATTATT +
Preference number: 6 (lower is better)
Translates to: QTAKRTTQFRRI*NTKYLPAFLII
Trigger: AATAATGAGGAATGCTGGGAGATACTTAGTATTCCAGATTCTTCTAAATTGAGTAGTTCTTTTGGCAGTCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553205.1