Pregenerated sensors for RPL41 (Homo sapiens)
Ensembl gene IDs: ENSG00000229117Ensembl transcript IDs: ENST00000358888.7, ENST00000546591.6, ENST00000552314.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 72 bp | CCACACCACGTAACCCGGGCTGTTGCCTTTATAGCTTaGATACCCTCCATAGCACAGGTAGTGACAGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: PHHVTRAVAFIA*IPSIAQVVTGQ Trigger: TTGCCCTGTCACTACCTGTGCTATGGAGGGTATCAAAGCTATAAAGGCAACAGCCCGGGTTACGTGGTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS-3UTR GCA 90 bp | TGCAAACCACACCACGTAACCCGGGCTGTTGCCTTTATAGCTTTGATACCCTCCCGTAACCCGGGCTGTTaGCTTTATAGCTTTGATACC | + |
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Preference number: 4 (lower is better) Translates to: CKPHHVTRAVAFIALIPSRNPGC*LYSFDT Trigger: GGTATCAAAGCTATAAAGGCAACAGCCCGGGTTACG...GGAGGGTATCAAAGCTATAAAGGCAACAGCCCGGGTTACGTGGTGTGGTTTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS-3UTR GCA 90 bp | AACCCGGGCTGTTGCCTTTATAGCTTTGATACCCTCCATAGCACAGGTAGTGACTGTGATGATGCTAAGTaGCGAGGTCAGATGTCTATG | + |
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Preference number: 4 (lower is better) Translates to: NPGCCLYSFDTLHSTGSDCDDAK*RGQMSM Trigger: CATAGACATCTGACCTCGGCACTTAGCATCATCACA...GTCACTACCTGTGCTATGGAGGGTATCAAAGCTATAAAGGCAACAGCCCGGGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS-3UTR GCA 90 bp | GGCTGTTGCCTTTATAGCTTTGATACCCTCCATAGCACAGGTAGTGACAGGGCAAGGCTACAGTTAGTTTaGTGTGATGATGCTAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: GCCLYSFDTLHSTGSDRARLQLV*CDDAKC Trigger: GCACTTAGCATCATCACAGCAAACTAACTGTAGCCT...TGCCCTGTCACTACCTGTGCTATGGAGGGTATCAAAGCTATAAAGGCAACAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS-3UTR CCA 90 bp | GATACCCTCCATAGCACAGGTAGTGACAGGGCAAACTCTAATGACAGAAAACCCGAGGTCAGATGTCTATaGATTGTACACGGAATCCCA | + |
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Preference number: 4 (lower is better) Translates to: DTLHSTGSDRANSNDRKPEVRCL*IVHGIP Trigger: TGGGATTCCGTGTACAATCCATAGACATCTGACCTC...GGGTTTTCTGTCATTAGAGTTTGCCCTGTCACTACCTGTGCTATGGAGGGTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS TCA 90 bp | CTCTCACAAACTACCTTCTCTCTCCCACCAGCTCTTGGGCACCCTTaGAACCCAGTAGTTCAGGAGGTATGGCGGACTTGCCTTCGTCTC | + |
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Preference number: 5 (lower is better) Translates to: LSQTTFSLPPALGHP*NPVVQEVWRTCLRL Trigger: GAGACGAAGGCAAGTCCGCCATACCTCCTGAACTACTGGGTTTCAAGGGTGCCCAAGAGCTGGTGGGAGAGAGAAGGTAGTTTGTGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000552314.1 |
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| CDS CCA 90 bp | ACCGCTAGCTCTCTCACAAACTACCTTCTCTCTCCCACCAGCTCTTaGGCACCCTTGAAACCCAGTAGTTCAGGAGGTATGGCGGACTTG | + |
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Preference number: 5 (lower is better) Translates to: TASSLTNYLLSPTSS*APLKPSSSGGMADL Trigger: CAAGTCCGCCATACCTCCTGAACTACTGGGTTTCAAGGGTGCCCAAGAGCTGGTGGGAGAGAGAAGGTAGTTTGTGAGAGAGCTAGCGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000552314.1 |
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| CDS-3UTR CAA 90 bp | CAAACCACACCACGTAACCCGGGCTGTTGCCTTTATAGCTTTGATACCCTCCATGTTGCCTTTATAGCTTaGATACCCTCCATAGCACAG | + |
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Preference number: 5 (lower is better) Translates to: QTTPRNPGCCLYSFDTLHVAFIA*IPSIAQ Trigger: CTGTGCTATGGAGGGTATCAAAGCTATAAAGGCAAC...ATGGAGGGTATCAAAGCTATAAAGGCAACAGCCCGGGTTACGTGGTGTGGTTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS GCA 90 bp | GGAAAGAGAGAAAGGCTACAGTTAGTTTGCTGTGATGATGCTAAGTaGCGAGGTCAGATGTCTATGGATTGTACACGGAATCCCAACGCA | + |
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Preference number: 5 (lower is better) Translates to: GKRERLQLVCCDDAK*RGQMSMDCTRNPNA Trigger: TGCGTTGGGATTCCGTGTACAATCCATAGACATCTGACCTCGGCACTTAGCATCATCACAGCAAACTAACTGTAGCCTTTCTCTCTTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS GCA 90 bp | GCGCAGAGGTTTCTACAGGGAAAGAGAGAAAGGCTACAGTTAGTTTaGTGTGATGATGCTAAGTGCCGAGGTCAGATGTCTATGGATTGT | + |
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Preference number: 5 (lower is better) Translates to: AQRFLQGKRERLQLV*CDDAKCRGQMSMDC Trigger: ACAATCCATAGACATCTGACCTCGGCACTTAGCATCATCACAGCAAACTAACTGTAGCCTTTCTCTCTTTCCCTGTAGAAACCTCTGCGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS-3UTR CAA 90 bp | TGTTGCCTTTATAGCTTTGATACCCTCCATAGCACAGGTAGTGACAGGGCAAACTCAGATGTCTATGGATaGTACACGGAATCCCAACGC | + |
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Preference number: 5 (lower is better) Translates to: CCLYSFDTLHSTGSDRANSDVYG*YTESQR Trigger: GCGTTGGGATTCCGTGTACAATCCATAGACATCTGA...GTTTGCCCTGTCACTACCTGTGCTATGGAGGGTATCAAAGCTATAAAGGCAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS CAA 90 bp | TCTTGGGCACCCTTGAAACCCAGTAGTTCAGGAGGTATGGCGGACTaGCCTTCGTCTCCTCGCTACTACTCGCCAACTCCTACCTCCCAA | + |
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Preference number: 6 (lower is better) Translates to: SWAPLKPSSSGGMAD*PSSPRYYSPTPTSQ Trigger: TTGGGAGGTAGGAGTTGGCGAGTAGTAGCGAGGAGACGAAGGCAAGTCCGCCATACCTCCTGAACTACTGGGTTTCAAGGGTGCCCAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000358888.7 ENST00000552314.1 |
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| CDS CAA 72 bp | CCCTTGAAACCCAGTAGTTCAGGAGGTATGGCGGACTaGCCTTCGTCTCCTCGCTACTACTCGCCAACTCCT | + |
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Preference number: 6 (lower is better) Translates to: PLKPSSSGGMAD*PSSPRYYSPTP Trigger: AGGAGTTGGCGAGTAGTAGCGAGGAGACGAAGGCAAGTCCGCCATACCTCCTGAACTACTGGGTTTCAAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000358888.7 ENST00000552314.1 |
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| CDS CCA 72 bp | GCTGTGATGATGCTAAGTGCCGAGGTCAGATGTCTATaGATTGTACACGGAATCCCAACGCAGGAACCAAAA | + |
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Preference number: 6 (lower is better) Translates to: AVMMLSAEVRCL*IVHGIPTQEPK Trigger: TTTTGGTTCCTGCGTTGGGATTCCGTGTACAATCCATAGACATCTGACCTCGGCACTTAGCATCATCACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS GCA 72 bp | GAAAGGCTACAGTTAGTTTGCTGTGATGATGCTAAGTaGCGAGGTCAGATGTCTATGGATTGTACACGGAAT | + |
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Preference number: 6 (lower is better) Translates to: ERLQLVCCDDAK*RGQMSMDCTRN Trigger: ATTCCGTGTACAATCCATAGACATCTGACCTCGGCACTTAGCATCATCACAGCAAACTAACTGTAGCCTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS GCA 72 bp | TTTCTACAGGGAAAGAGAGAAAGGCTACAGTTAGTTTaGTGTGATGATGCTAAGTGCCGAGGTCAGATGTCT | + |
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Preference number: 6 (lower is better) Translates to: FLQGKRERLQLV*CDDAKCRGQMS Trigger: AGACATCTGACCTCGGCACTTAGCATCATCACAGCAAACTAACTGTAGCCTTTCTCTCTTTCCCTGTAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546591.6 |
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| CDS CAA 90 bp | CACTCTTTAGAACCGGACAGATTCTTAACCAAGAAGTATGAAAGATaGGTCGTAACAACTACATCAGTAACTTGGACACCCTCCCAACAT | + |
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Preference number: 6 (lower is better) Translates to: HSLEPDRFLTKKYER*VVTTTSVTWTPSQH Trigger: ATGTTGGGAGGGTGTCCAAGTTACTGATGTAGTTGTTACGACCAATCTTTCATACTTCTTGGTTAAGAATCTGTCCGGTTCTAAAGAGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000552314.1 |
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| CDS TCA 72 bp | CTCTTTAGAACCGGACAGATTCTTAACCAAGAAGTATaGAAGATTGGTCGTAACAACTACATCAGTAACTTG | + |
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Preference number: 6 (lower is better) Translates to: LFRTGQILNQEV*KIGRNNYISNL Trigger: CAAGTTACTGATGTAGTTGTTACGACCAATCTTTCATACTTCTTGGTTAAGAATCTGTCCGGTTCTAAAGAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000552314.1 |
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