Pregenerated sensors for RPL35A (Homo sapiens)
Ensembl gene IDs: ENSG00000182899Ensembl transcript IDs: ENST00000439255.1, ENST00000474640.1, ENST00000485439.5, ENST00000496582.5, ENST00000642148.1, ENST00000642387.1, ENST00000647248.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAAGACTGGAAAGGGAGGGGAAATGCCATGAAGTGATCACGGGATaGCTAGCGCAGGCACTGGGGCCAAGGAGTGTGTGTCCTGGCCGG | + |
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Preference number: 1 (lower is better) Translates to: QRLEREGKCHEVITG*LAQALGPRSVCPGR Trigger: CCGGCCAGGACACACACTCCTTGGCCCCAGTGCCTGCGCTAGTCATCCCGTGATCACTTCATGGCATTTCCCCTCCCTTTCCAGTCTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439255.1 |
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| 3UTR CCA 90 bp | TCTGCATTGAACAAATGCATAGTATCACAAAGCACTTGGCAGGTGTaGTGGCTCATAACTGTATCCCAGCACTTCAGGAGAGGCCAAGGA | + |
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Preference number: 1 (lower is better) Translates to: SALNKCIVSQSTWQV*WLITVSQHFRRGQG Trigger: TCCTTGGCCTCTCCTGAAGTGCTGGGATACAGTTATGAGCCACCACACCTGCCAAGTGCTTTGTGATACTATGCATTTGTTCAATGCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR-3UTR CCA 90 bp | GCTTTGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAAAAAATGACCCAGGGATaGTGGCATGAGCCTGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: ALSSHKSQELLIPVYPNEKMTQG*WHEPVV Trigger: GACCACAGGCTCATGCCACCATCCCTGGGTCATTTT...TTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACAAAGC 49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR-3UTR CCA 90 bp | TGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGCAGCACTTGGCAGGTGTaGTGGCTCATAACTGTATCC | + |
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Preference number: 2 (lower is better) Translates to: CPVTSPKSFSSQSIQMNCSTWQV*WLITVS Trigger: GGATACAGTTATGAGCCACCACACCTGCCAAGTGCT...GCAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCCTGTGGTCCCAGCTACTTCAAAGGCCAAGGGAGGATTGCTTGAGCCTTTGGTACTCCAAAAATGCTaGGCAACCTCTATCATTTTA | + |
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Preference number: 2 (lower is better) Translates to: EPVVPATSKAKGGLLEPLVLQKC*ATSIIL Trigger: TAAAATGATAGAGGTTGCTCAGCATTTTTGGAGTAC...CAAAGGCTCAAGCAATCCTCCCTTGGCCTTTGAAGTAGCTGGGACCACAGGCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR-3UTR TCA 90 bp | CTTTGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACCAAGGGAGGATTGCTTaGGCCTTTGAATGTGAGGCT | + |
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Preference number: 2 (lower is better) Translates to: LCPVTSPKSFSSQSIQMNQGRIA*AFECEA Trigger: AGCCTCACATTCAAAGGCTCAAGCAATCCTCCCTTG...GTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACAAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR-3UTR GCA 90 bp | TGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGCTCTGCATTGAACAAATaGATAGTATCACAAAGCACT | + |
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Preference number: 2 (lower is better) Translates to: CPVTSPKSFSSQSIQMNCSALNK*IVSQST Trigger: AGTGCTTTGTGATACTATGCATTTGTTCAATGCAGA...GCAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR TCA 72 bp | GAAAGGGAGGGGAAATGCCATGAAGTGATCACGGGATaGCTAGCGCAGGCACTGGGGCCAAGGAGTGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: EREGKCHEVITG*LAQALGPRSVC Trigger: ACACACACTCCTTGGCCCCAGTGCCTGCGCTAGTCATCCCGTGATCACTTCATGGCATTTCCCCTCCCTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439255.1 |
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| 3UTR TCA 72 bp | GGTCCCAGCTACTTCAAAGGCCAAGGGAGGATTGCTTaGGCCTTTGAATGTGAGGCTGCAGCGAGCACCACT | + |
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Preference number: 3 (lower is better) Translates to: GPSYFKGQGRIA*AFECEAAASTT Trigger: AGTGGTGCTCGCTGCAGCCTCACATTCAAAGGCTCAAGCAATCCTCCCTTGGCCTTTGAAGTAGCTGGGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR TCA 72 bp | CATGGAACAAAGACTGGAAAGGGAGGGGAAATGCCATaGAGTGATCACGGGATGACTAGCGCAGGCACTGGG | + |
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Preference number: 3 (lower is better) Translates to: HGTKTGKGGEMP*SDHGMTSAGTG Trigger: CCCAGTGCCTGCGCTAGTCATCCCGTGATCACTTCATGGCATTTCCCCTCCCTTTCCAGTCTTTGTTCCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439255.1 |
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| 3UTR-3UTR CAA 90 bp | GTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGCCAAAGCGTCTCTCTGACCCCCTaGTACTCCAAAAATGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: VTSPKSFSSQSIQMNCQSVSLTP*YSKNAE Trigger: CTCAGCATTTTTGGAGTACAAGGGGGTCAGAGAGAC...GCTTTGGCAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR TCA 72 bp | GTTGCTGCCATTTTAAATAGCCAAGGAAGGTCTCACTaGGGTGACCATGGAACAAAGACTGGAAAGGGAGGG | + |
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Preference number: 3 (lower is better) Translates to: VAAILNSQGRSH*GDHGTKTGKGG Trigger: CCCTCCCTTTCCAGTCTTTGTTCCATGGTCACCTCAGTGAGACCTTCCTTGGCTATTTAAAATGGCAGCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439255.1 |
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| 3UTR-3UTR CAA 90 bp | TTTCCGTGCACTATTCCCAACCTCCATGTACCTACCATAGGATTGCTTTTTATGAAGGCCAAGGGAGGATaGCTTGAGCCTTTGAATGTG | + |
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Preference number: 3 (lower is better) Translates to: FPCTIPNLHVPTIGLLFMKAKGG*LEPLNV Trigger: CACATTCAAAGGCTCAAGCAATCCTCCCTTGGCCTT...CATAAAAAGCAATCCTATGGTAGGTACATGGAGGTTGGGAATAGTGCACGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCGTGCACTATTCCCAACCTCCATGTACCTACCATAGGATTGCTTTTTATGAGTATCACAAAGCACTaGGCAGGTGTGGTGGCTCAT | + |
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Preference number: 3 (lower is better) Translates to: FPCTIPNLHVPTIGLLFMSITKH*AGVVAH Trigger: ATGAGCCACCACACCTGCCAAGTGCTTTGTGATACT...CATAAAAAGCAATCCTATGGTAGGTACATGGAGGTTGGGAATAGTGCACGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR CCA 72 bp | AACAAATGCATAGTATCACAAAGCACTTGGCAGGTGTaGTGGCTCATAACTGTATCCCAGCACTTCAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: NKCIVSQSTWQV*WLITVSQHFRR Trigger: TCTCCTGAAGTGCTGGGATACAGTTATGAGCCACCACACCTGCCAAGTGCTTTGTGATACTATGCATTTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR-3UTR CAA 90 bp | TTGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGGTTTCCCAATCTGCATaGAACAAATGCATAGTATCA | + |
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Preference number: 3 (lower is better) Translates to: LSSHKSQELLIPVYPNELVSQSA*NKCIVS Trigger: TGATACTATGCATTTGTTCAATGCAGATTGGGAAAC...CAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR TCA 90 bp | GGGATGACTAGCGCAGGCACTGGGGCCAAGGAGTGTGTGTCCTGGCCGGAAGAAAAGGTCTCACTGAGGTaGCCATGGAACAAAGACTGG | + |
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Preference number: 4 (lower is better) Translates to: GMTSAGTGAKECVSWPEEKVSLR*PWNKDW Trigger: CCAGTCTTTGTTCCATGGTCACCTCAGTGAGACCTT...TTCTTCCGGCCAGGACACACACTCCTTGGCCCCAGTGCCTGCGCTAGTCATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439255.1 |
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| 3UTR CAA 72 bp | CCTGTGGTCCCAGCTACTTCAAAGGCCAAGGGAGGATaGCTTGAGCCTTTGAATGTGAGGCTGCAGCGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PVVPATSKAKGG*LEPLNVRLQRA Trigger: TGCTCGCTGCAGCCTCACATTCAAAGGCTCAAGCAATCCTCCCTTGGCCTTTGAAGTAGCTGGGACCACAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR CCA 90 bp | GGAGGATTGCTTGAGCCTTTGAATGTGAGGCTGCAGCGAGCACCACTACACTCCAAAATGACCCAGGGATaGTGGCATGAGCCTGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: GGLLEPLNVRLQRAPLHSKMTQG*WHEPVV Trigger: GACCACAGGCTCATGCCACCATCCCTGGGTCATTTT...GGAGTGTAGTGGTGCTCGCTGCAGCCTCACATTCAAAGGCTCAAGCAATCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR TCA 90 bp | GAGCCTGTGGTCCCAGCTACTTCAAAGGCCAAGGGAGGATTGCTTGAGCCTTTGCCCAGTCTATCCAAATaGACTGCCAAAGCCCATCAA | + |
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Preference number: 4 (lower is better) Translates to: EPVVPATSKAKGGLLEPLPSLSK*TAKAHQ Trigger: TTGATGGGCTTTGGCAGTTCATTTGGATAGACTGGG...CAAAGGCTCAAGCAATCCTCCCTTGGCCTTTGAAGTAGCTGGGACCACAGGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR TCA 90 bp | GAAGGTCTCACTGAGGTGACCATGGAACAAAGACTGGAAAGGGAGGGGAAATGCGGCCGGAAGAAAGACTaGAGACACCAAGGGGTTAAT | + |
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Preference number: 4 (lower is better) Translates to: EGLTEVTMEQRLEREGKCGRKKD*RHQGVN Trigger: ATTAACCCCTTGGTGTCTTCAGTCTTTCTTCCGGCC...GCATTTCCCCTCCCTTTCCAGTCTTTGTTCCATGGTCACCTCAGTGAGACCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439255.1 |
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| CDS-3UTR CCA 90 bp | GCTTTGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAAATGACCCAGGGATGGTaGCATGAGCCTGTGGTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: ALSSHKSQELLIPVYPNEMTQGW*HEPVVP Trigger: TGGGACCACAGGCTCATGCCACCATCCCTGGGTCAT...TTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACAAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR TCA 90 bp | TGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGCCAAGGGAGGATTGCTTaGGCCTTTGAATGTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: CPVTSPKSFSSQSIQMNCQGRIA*AFECEA Trigger: AGCCTCACATTCAAAGGCTCAAGCAATCCTCCCTTG...GCAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR GCA 90 bp | TTGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGGCTGCCACCTTTCCGTaGACTATTCCCAACCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: LSSHKSQELLIPVYPNELAATFP*TIPNLH Trigger: ATGGAGGTTGGGAATAGTGCACGGAAAGGTGGCAGC...CAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR CCA 90 bp | GTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGCCAAAGCAGCACTTGGCAGGTGTaGTGGCTCATAACTGTATCC | + |
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Preference number: 4 (lower is better) Translates to: VTSPKSFSSQSIQMNCQSSTWQV*WLITVS Trigger: GGATACAGTTATGAGCCACCACACCTGCCAAGTGCT...GCTTTGGCAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR GCA 90 bp | GTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGCCAAAGCGAAGCCAAAGAAAGCTaGCACCTTTCCGTGCACTAT | + |
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Preference number: 4 (lower is better) Translates to: VTSPKSFSSQSIQMNCQSEAKES*HLSVHY Trigger: ATAGTGCACGGAAAGGTGGCAGCTTTCTTTGGCTTC...GCTTTGGCAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR GCA 90 bp | TTGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGGAGGCCTGCTTAAAGTaGAATCTTGAACTTTACCAG | + |
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Preference number: 4 (lower is better) Translates to: LSSHKSQELLIPVYPNELEACLK*NLELYQ Trigger: CTGGTAAAGTTCAAGATTGCACTTTAAGCAGGCCTC...CAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR TCA 90 bp | TTGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGTACCAGATTAAAACATaGAGCCAAAGAAAGCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: LSSHKSQELLIPVYPNELYQIKT*SQRKLP Trigger: TGGCAGCTTTCTTTGGCTTCATGTTTTAATCTGGTA...CAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR TCA 90 bp | CCCAACCTCCATGTACCTACCATAGGATTGCTTTTTATGAGTGGAGTAATATGGGTACTCCAAAAATGCTaGGCAACCTCTATCATTTTA | + |
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Preference number: 4 (lower is better) Translates to: PNLHVPTIGLLFMSGVIWVLQKC*ATSIIL Trigger: TAAAATGATAGAGGTTGCTCAGCATTTTTGGAGTAC...CCATATTACTCCACTCATAAAAAGCAATCCTATGGTAGGTACATGGAGGTTGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| 3UTR CAA 72 bp | TGCACTATTCCCAACCTCCATGTACCTACCATAGGATaGCTTTTTATGAGTGGAGTAATATGGCTTAATTTT | + |
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Preference number: 4 (lower is better) Translates to: CTIPNLHVPTIG*LFMSGVIWLNF Trigger: AAAATTAAGCCATATTACTCCACTCATAAAAAGCAATCCTATGGTAGGTACATGGAGGTTGGGAATAGTGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS TCA 90 bp | GCTGAGACAGGACACTTGCTTGAACCCGGGAGGCGGAGGTTTCGGTaGGGGAGACCAAGTCACTGCATTCCAGCCTCGGCAACAGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: AETGHLLEPGRRRFR*GRPSHCIPASATEQ Trigger: TTGCTCTGTTGCCGAGGCTGGAATGCAGTGACTTGGTCTCCCTCACCGAAACCTCCGCCTCCCGGGTTCAAGCAAGTGTCCTGTCTCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496582.5 |
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| CDS-3UTR CAA 90 bp | GGAGGATTGCTTGAGCCTTTGAATGTGAGGCTGCAGCGAGCACCACTACACTCCGTCTCTCTGACCCCCTaGTACTCCAAAAATGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: GGLLEPLNVRLQRAPLHSVSLTP*YSKNAE Trigger: CTCAGCATTTTTGGAGTACAAGGGGGTCAGAGAGAC...GGAGTGTAGTGGTGCTCGCTGCAGCCTCACATTCAAAGGCTCAAGCAATCCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR CAA 90 bp | GAGCCTGTGGTCCCAGCTACTTCAAAGGCCAAGGGAGGATTGCTTGAGCCTTTGAGTATCACAAAGCACTaGGCAGGTGTGGTGGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: EPVVPATSKAKGGLLEPLSITKH*AGVVAH Trigger: ATGAGCCACCACACCTGCCAAGTGCTTTGTGATACT...CAAAGGCTCAAGCAATCCTCCCTTGGCCTTTGAAGTAGCTGGGACCACAGGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS-3UTR CAA 90 bp | GGGATGACTAGCGCAGGCACTGGGGCCAAGGAGTGTGTGTCCTGGCCGGAAGAAGTTAATCCCAGTTCTTaGCTTTATATACATAAGCGC | + |
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Preference number: 5 (lower is better) Translates to: GMTSAGTGAKECVSWPEEVNPSS*LYIHKR Trigger: GCGCTTATGTATATAAAGCAAAGAACTGGGATTAAC...TTCTTCCGGCCAGGACACACACTCCTTGGCCCCAGTGCCTGCGCTAGTCATCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439255.1 |
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| CDS TCA 90 bp | CAGGCACTGGGGCCAAGGAGTGTGTGTCCTGGCCGGAAGAAAGACTaGAGACACCAAGGGGTTAATCCCAGTTCTTTGCTTTATATACAT | + |
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Preference number: 5 (lower is better) Translates to: QALGPRSVCPGRKKD*RHQGVNPSSLLYIH Trigger: ATGTATATAAAGCAAAGAACTGGGATTAACCCCTTGGTGTCTTCAGTCTTTCTTCCGGCCAGGACACACACTCCTTGGCCCCAGTGCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439255.1 |
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| CDS-3UTR CAA 90 bp | GTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGCCAAAGCAAGGCCAAGGGAGGATaGCTTGAGCCTTTGAATGTG | + |
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Preference number: 5 (lower is better) Translates to: VTSPKSFSSQSIQMNCQSKAKGG*LEPLNV Trigger: CACATTCAAAGGCTCAAGCAATCCTCCCTTGGCCTT...GCTTTGGCAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS TCA 90 bp | AAGGAGGAATTACCTGCCATTTTAAATAGCCAAGGAAGGTCTCACTaGGGTGACCATGGAACAAAGACTGGAAAGGGAGGGGAAATGCCA | + |
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Preference number: 5 (lower is better) Translates to: KEELPAILNSQGRSH*GDHGTKTGKGGEMP Trigger: TGGCATTTCCCCTCCCTTTCCAGTCTTTGTTCCATGGTCACCTCAGTGAGACCTTCCTTGGCTATTTAAAATGGCAGGTAATTCCTCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000474640.1 |
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| CDS GCA 90 bp | ATTCCTTTTGGATGGGAGTTTCATGTAGGAGTTCGGGGACAACAATaGCAGAACATCCATATGAAACGCAGGGTCCGGCAAGACATTCAA | + |
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Preference number: 5 (lower is better) Translates to: IPFGWEFHVGVRGQQ*QNIHMKRRVRQDIQ Trigger: TTGAATGTCTTGCCGGACCCTGCGTTTCATATGGATGTTCTGGCATTGTTGTCCCCGAACTCCTACATGAAACTCCCATCCAAAAGGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000642148.1 ENST00000642387.1 |
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| CDS CCA 90 bp | ATGAAACGCAGGGTCCGGCAAGACATTCAAACCTCAGAGAACAGCTaGTATCTAAGCAAACTTCAGAATGAAGACAAAACTCCACAGGAG | + |
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Preference number: 5 (lower is better) Translates to: MKRRVRQDIQTSENS*YLSKLQNEDKTPQE Trigger: CTCCTGTGGAGTTTTGTCTTCATTCTGAAGTTTGCTTAGATACCAGCTGTTCTCTGAGGTTTGAATGTCTTGCCGGACCCTGCGTTTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000642387.1 |
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| CDS-3UTR CAA 90 bp | TTGTCCAGTCACAAGTCCCAAGAGCTTCTCATCCCAGTCTATCCAAATGAACTGGTACCTACCATAGGATaGCTTTTTATGAGTGGAGTA | + |
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Preference number: 5 (lower is better) Translates to: LSSHKSQELLIPVYPNELVPTIG*LFMSGV Trigger: TACTCCACTCATAAAAAGCAATCCTATGGTAGGTAC...CAGTTCATTTGGATAGACTGGGATGAGAAGCTCTTGGGACTTGTGACTGGACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS CCA 90 bp | TCTCTCCAGTGTTCTGCAATACACAAATTTTGCAGCATAATTTACTaGTGTCAATTTCACAACCACAGAAGTCCTCAGAAGTCAAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: SLQCSAIHKFCSIIY*CQFHNHRSPQKSKH Trigger: GTGCTTTGACTTCTGAGGACTTCTGTGGTTGTGAAATTGACACCAGTAAATTATGCTGCAAAATTTGTGTATTGCAGAACACTGGAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485439.5 |
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| CDS-3UTR CAA 90 bp | CCCAACCTCCATGTACCTACCATAGGATTGCTTTTTATGAGTGGAGTAATATGGGTTTCCCAATCTGCATaGAACAAATGCATAGTATCA | + |
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Preference number: 5 (lower is better) Translates to: PNLHVPTIGLLFMSGVIWVSQSA*NKCIVS Trigger: TGATACTATGCATTTGTTCAATGCAGATTGGGAAAC...CCATATTACTCCACTCATAAAAAGCAATCCTATGGTAGGTACATGGAGGTTGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000647248.2 |
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| CDS CAA 72 bp | TCCCAGCTACTCGGGAGGCTGAGACAGGACACTTGCTaGAACCCGGGAGGCGGAGGTTTCGGTGAGGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: SQLLGRLRQDTC*NPGGGGFGEGD Trigger: GTCTCCCTCACCGAAACCTCCGCCTCCCGGGTTCAAGCAAGTGTCCTGTCTCAGCCTCCCGAGTAGCTGGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496582.5 |
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| CDS TCA 72 bp | GGACACTTGCTTGAACCCGGGAGGCGGAGGTTTCGGTaGGGGAGACCAAGTCACTGCATTCCAGCCTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: GHLLEPGRRRFR*GRPSHCIPASA Trigger: TGCCGAGGCTGGAATGCAGTGACTTGGTCTCCCTCACCGAAACCTCCGCCTCCCGGGTTCAAGCAAGTGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496582.5 |
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| CDS TCA 72 bp | GGGCCAAGGAGTGTGTGTCCTGGCCGGAAGAAAGACTaGAGACACCAAGGGGTTAATCCCAGTTCTTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: GPRSVCPGRKKD*RHQGVNPSSLL Trigger: AAGCAAAGAACTGGGATTAACCCCTTGGTGTCTTCAGTCTTTCTTCCGGCCAGGACACACACTCCTTGGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439255.1 |
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| CDS GCA 72 bp | GGATGGGAGTTTCATGTAGGAGTTCGGGGACAACAATaGCAGAACATCCATATGAAACGCAGGGTCCGGCAA | + |
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Preference number: 6 (lower is better) Translates to: GWEFHVGVRGQQ*QNIHMKRRVRQ Trigger: TTGCCGGACCCTGCGTTTCATATGGATGTTCTGGCATTGTTGTCCCCGAACTCCTACATGAAACTCCCATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000642148.1 ENST00000642387.1 |
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| CDS CAA 72 bp | CACCTTGAACCTAGTCTGATTCATCAGACGTCCATTTaGCTAAAAACCATACTCACCACTCGGATTCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: HLEPSLIHQTSI*LKTILTTRILC Trigger: ACACAGAATCCGAGTGGTGAGTATGGTTTTTAGCAAAATGGACGTCTGATGAATCAGACTAGGTTCAAGGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000485439.5 |
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| CDS CCA 72 bp | TGTTCTGCAATACACAAATTTTGCAGCATAATTTACTaGTGTCAATTTCACAACCACAGAAGTCCTCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: CSAIHKFCSIIY*CQFHNHRSPQK Trigger: CTTCTGAGGACTTCTGTGGTTGTGAAATTGACACCAGTAAATTATGCTGCAAAATTTGTGTATTGCAGAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485439.5 |
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