Pregenerated sensors for RPL35 (Homo sapiens)
Ensembl gene IDs: ENSG00000136942Ensembl transcript IDs: ENST00000373570.8, ENST00000487431.1, ENST00000493018.5, ENST00000495728.1, ENST00000629845.1
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTTGGCAAAGCTGTGGAAGAGCCGGGGCTTGCATCTCAGTCAAGTaGCTCCCAACTCAGTGCTCCTTCCACTGCCCGATTCCCAGTCAC | + |
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Preference number: 1 (lower is better) Translates to: SWQSCGRAGACISVK*LPTQCSFHCPIPSH Trigger: GTGACTGGGAATCGGGCAGTGGAAGGAGCACTGAGTTGGGAGTCACTTGACTGAGATGCAAGCCCCGGCTCTTCCACAGCTTTGCCAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| 3UTR CCA 90 bp | ACTTCTTGCCCTACTGGGCTGAGTGTCCAAGTCTTGGCAAAGCTGTaGAAGAGCCGGGGCTTGCATCTCAGTCAAGTGACTCCCAACTCA | + |
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Preference number: 1 (lower is better) Translates to: TSCPTGLSVQVLAKL*KSRGLHLSQVTPNS Trigger: TGAGTTGGGAGTCACTTGACTGAGATGCAAGCCCCGGCTCTTCCACAGCTTTGCCAAGACTTGGACACTCAGCCCAGTAGGGCAAGAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| 3UTR-3UTR TCA 90 bp | GAGCCGGGGCTTGCATCTCAGTCAAGTGACTCCCAACTCAGTGCTCCTTCCACTACGAGGACAGTCACATaGCAACCTAGTACAGGGCAC | + |
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Preference number: 2 (lower is better) Translates to: EPGLASQSSDSQLSAPSTTRTVT*QPSTGH Trigger: GTGCCCTGTACTAGGTTGTCATGTGACTGTCCTCGT...AGTGGAAGGAGCACTGAGTTGGGAGTCACTTGACTGAGATGCAAGCCCCGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| 3UTR TCA 72 bp | TCCACTGCCCGATTCCCAGTCACGAGGACAGTCACATaGCAACCTAGTACAGGGCACGCAGCACCCACCAAG | + |
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Preference number: 3 (lower is better) Translates to: STARFPVTRTVT*QPSTGHAAPTK Trigger: CTTGGTGGGTGCTGCGTGCCCTGTACTAGGTTGTCATGTGACTGTCCTCGTGACTGGGAATCGGGCAGTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| 3UTR TCA 72 bp | AGCTGTGGAAGAGCCGGGGCTTGCATCTCAGTCAAGTaGCTCCCAACTCAGTGCTCCTTCCACTGCCCGATT | + |
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Preference number: 3 (lower is better) Translates to: SCGRAGACISVK*LPTQCSFHCPI Trigger: AATCGGGCAGTGGAAGGAGCACTGAGTTGGGAGTCACTTGACTGAGATGCAAGCCCCGGCTCTTCCACAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| 3UTR CCA 72 bp | CCTACTGGGCTGAGTGTCCAAGTCTTGGCAAAGCTGTaGAAGAGCCGGGGCTTGCATCTCAGTCAAGTGACT | + |
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Preference number: 3 (lower is better) Translates to: PTGLSVQVLAKL*KSRGLHLSQVT Trigger: AGTCACTTGACTGAGATGCAAGCCCCGGCTCTTCCACAGCTTTGCCAAGACTTGGACACTCAGCCCAGTAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS-3UTR GCA 90 bp | AGGGCACGCAGCACCCACCAAGCCCCGGGGGTAGTTACCATTACCTCGGCTCTGCTCTGTCCATCTGTATaGAGGGCCCACCAGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RARSTHQAPGVVTITSALLCPSV*RAHQLL Trigger: CAGCAGCTGGTGGGCCCTGCATACAGATGGACAGAG...CAGAGCCGAGGTAATGGTAACTACCCCCGGGGCTTGGTGGGTGCTGCGTGCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS-3UTR TCA 90 bp | ACTCCCAACTCAGTGCTCCTTCCACTGCCCGATTCCCAGTCACGAGGACAGTCAGAGCATGCTGGGGGCTaGGGCAGTACTCTGTCCATC | + |
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Preference number: 4 (lower is better) Translates to: TPNSVLLPLPDSQSRGQSEHAGG*GSTLSI Trigger: GATGGACAGAGTACTGCCTCAGCCCCCAGCATGCTC...TGACTGTCCTCGTGACTGGGAATCGGGCAGTGGAAGGAGCACTGAGTTGGGAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS-3UTR TCA 90 bp | GAAGAGCCGGGGCTTGCATCTCAGTCAAGTGACTCCCAACTCAGTGCTCCTTCCACGAGGACAGTCACATaGCAACCTAGTACAGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: EEPGLASQSSDSQLSAPSTRTVT*QPSTGH Trigger: GTGCCCTGTACTAGGTTGTCATGTGACTGTCCTCGT...GGAAGGAGCACTGAGTTGGGAGTCACTTGACTGAGATGCAAGCCCCGGCTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS-3UTR TCA 90 bp | AGTCAAGTGACTCCCAACTCAGTGCTCCTTCCACTGCCCGATTCCCAGTCACGACTTGCCCTACTGGGCTaGGTGTCCAAGTCTTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: SQVTPNSVLLPLPDSQSRLALLG*VSKSWQ Trigger: TTGCCAAGACTTGGACACTCAGCCCAGTAGGGCAAG...TCGTGACTGGGAATCGGGCAGTGGAAGGAGCACTGAGTTGGGAGTCACTTGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS-3UTR CCA 90 bp | GTGGAAGAGCCGGGGCTTGCATCTCAGTCAAGTGACTCCCAACTCAGTGCTCCTTTAGCAAGAGCATGCTaGGGGCTGAGGCAGTACTCT | + |
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Preference number: 4 (lower is better) Translates to: VEEPGLASQSSDSQLSAPLARAC*GLRQYS Trigger: AGAGTACTGCCTCAGCCCCCAGCATGCTCTTGCTAA...AGGAGCACTGAGTTGGGAGTCACTTGACTGAGATGCAAGCCCCGGCTCTTCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS-3UTR CCA 90 bp | GAAGAGCCGGGGCTTGCATCTCAGTCAAGTGACTCCCAACTCAGTGCTCCTTCCCCATTACCTCGGCTCTaGTTAGCAAGAGCATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: EEPGLASQSSDSQLSAPSPLPRL*LARACW Trigger: CCAGCATGCTCTTGCTAACCAGAGCCGAGGTAATGG...GGAAGGAGCACTGAGTTGGGAGTCACTTGACTGAGATGCAAGCCCCGGCTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS-3UTR CCA 90 bp | ACTCAGTGCTCCTTCCACTGCCCGATTCCCAGTCACGAGGACAGTCACATGACAGTCTTGGCAAAGCTGTaGAAGAGCCGGGGCTTGCAT | + |
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Preference number: 4 (lower is better) Translates to: TQCSFHCPIPSHEDSHMTVLAKL*KSRGLH Trigger: ATGCAAGCCCCGGCTCTTCCACAGCTTTGCCAAGAC...TGTCATGTGACTGTCCTCGTGACTGGGAATCGGGCAGTGGAAGGAGCACTGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| 3UTR CAA 72 bp | GTCCAAGTCTTGGCAAAGCTGTGGAAGAGCCGGGGCTaGCATCTCAGTCAAGTGACTCCCAACTCAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: VQVLAKLWKSRG*HLSQVTPNSVL Trigger: GAGCACTGAGTTGGGAGTCACTTGACTGAGATGCAAGCCCCGGCTCTTCCACAGCTTTGCCAAGACTTGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS-3UTR TCA 90 bp | AGTCAAGTGACTCCCAACTCAGTGCTCCTTCCACTGCCCGATTCCCAGTCACGATGCATCTCAGTCAAGTaGCTCCCAACTCAGTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: SQVTPNSVLLPLPDSQSRCISVK*LPTQCS Trigger: GGAGCACTGAGTTGGGAGTCACTTGACTGAGATGCA...TCGTGACTGGGAATCGGGCAGTGGAAGGAGCACTGAGTTGGGAGTCACTTGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS GCA 90 bp | GCCGGAGCCCCAACCAGGGCTCAGGACAGTCTCCCTCGCCGGCCGTaGCTTGGGCAGAGTAACCCAGGCCCGGGCCGCGCGCCTCTCCCG | + |
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Preference number: 5 (lower is better) Translates to: AGAPTRAQDSLPRRP*LGQSNPGPGRAPLP Trigger: CGGGAGAGGCGCGCGGCCCGGGCCTGGGTTACTCTGCCCAAGGCACGGCCGGCGAGGGAGACTGTCCTGAGCCCTGGTTGGGGCTCCGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS GCA 90 bp | GCGTGGCCAGCCCCCAAAGGCGCGCGACTCGCCATCGACTACGAGTaGGCCGGAGCCCCAACCAGGGCTCAGGACAGTCTCCCTCGCCGG | + |
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Preference number: 5 (lower is better) Translates to: AWPAPKGARLAIDYE*AGAPTRAQDSLPRR Trigger: CCGGCGAGGGAGACTGTCCTGAGCCCTGGTTGGGGCTCCGGCGCACTCGTAGTCGATGGCGAGTCGCGCGCCTTTGGGGGCTGGCCACGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS GCA 90 bp | CCGGCGCCAAGCGAAGAGGCGGGTTGTGGTGGCGCCAGACCATTCTaGGCGGCGCCCCACAGGCCTAGGTGGCAGATAGAATCCGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: PAPSEEAGCGGARPF*AAPHRPRWQIESAG Trigger: GCCCGCGGATTCTATCTGCCACCTAGGCCTGTGGGGCGCCGCGCAGAATGGTCTGGCGCCACCACAACCCGCCTCTTCGCTTGGCGCCGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS CCA 90 bp | AGCCCGCACCGCCTTCCCCAACCCCCGCGCCTCACAGCGCTCGGATaGCGCCCGATTCCGCAGCTCTCACCATTGCTGCACAAGCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: SPHRLPQPPRLTALG*RPIPQLSPLLHKPP Trigger: TGGCGGCTTGTGCAGCAATGGTGAGAGCTGCGGAATCGGGCGCCATCCGAGCGCTGTGAGGCGCGGGGGTTGGGGAAGGCGGTGCGGGCT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS CCA 90 bp | TGTGGTGGCGCCAGACCATTCTGCGCGGCGCCCCACAGGCCTAGGTaGCAGATAGAATCCGCGGGCTCAGCCCGCACCGCCTTCCCCAAC | + |
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Preference number: 5 (lower is better) Translates to: CGGARPFCAAPHRPR*QIESAGSARTAFPN Trigger: GTTGGGGAAGGCGGTGCGGGCTGAGCCCGCGGATTCTATCTGCCACCTAGGCCTGTGGGGCGCCGCGCAGAATGGTCTGGCGCCACCACA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS CCA 90 bp | GGGGCTTGTACTTCTTGCCCTCGGCTCTGGTTAGCAAGAGCATGCTaGGGGCTGAGGCAGTACTCTGTCCATCTGTATGCAGGGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: GACTSCPRLWLARAC*GLRQYSVHLYAGPT Trigger: GGTGGGCCCTGCATACAGATGGACAGAGTACTGCCTCAGCCCCCAGCATGCTCTTGCTAACCAGAGCCGAGGGCAAGAAGTACAAGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373570.8 |
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| CDS GCA 90 bp | GTCCGGGTAGGCTTTGAAGGCAGCATTAAGATGGGTCTCCGGGGATaGATTCCAGGCACAAGGACCGCAAGGTCAAGGCAGGTAAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: VRVGFEGSIKMGLRG*IPGTRTARSRQVRG Trigger: GCCTCTTACCTGCCTTGACCTTGCGGTCCTTGTGCCTGGAATGCATCCCCGGAGACCCATCTTAATGCTGCCTTCAAAGCCTACCCGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495728.1 |
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| CDS-3UTR CAA 90 bp | GCATCTCAGTCAAGTGACTCCCAACTCAGTGCTCCTTCCACTGCCCGATTCCCAAGGGGCTTGTACTTCTaGCCCTACTGGGCTGAGTGT | + |
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Preference number: 5 (lower is better) Translates to: ASQSSDSQLSAPSTARFPRGLYF*PYWAEC Trigger: ACACTCAGCCCAGTAGGGCAAGAAGTACAAGCCCCT...TGGGAATCGGGCAGTGGAAGGAGCACTGAGTTGGGAGTCACTTGACTGAGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS-3UTR CAA 90 bp | ACTCAGTGCTCCTTCCACTGCCCGATTCCCAGTCACGAGGACAGTCACATGACACTGAGTGTCCAAGTCTaGGCAAAGCTGTGGAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: TQCSFHCPIPSHEDSHMTLSVQV*AKLWKS Trigger: GCTCTTCCACAGCTTTGCCAAGACTTGGACACTCAG...TGTCATGTGACTGTCCTCGTGACTGGGAATCGGGCAGTGGAAGGAGCACTGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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| CDS CAA 90 bp | GAGCCCCAACCAGGGCTCAGGACAGTCTCCCTCGCCGGCCGTGCCTaGGGCAGAGTAACCCAGGCCCGGGCCGCGCGCCTCTCCCGGCGC | + |
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Preference number: 6 (lower is better) Translates to: EPQPGLRTVSLAGRA*GRVTQARAARLSRR Trigger: GCGCCGGGAGAGGCGCGCGGCCCGGGCCTGGGTTACTCTGCCCAAGGCACGGCCGGCGAGGGAGACTGTCCTGAGCCCTGGTTGGGGCTC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS CAA 72 bp | CCGCGCGCCTCTCCCGGCGCCAAGCGAAGAGGCGGGTaGTGGTGGCGCCAGACCATTCTGCGCGGCGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: PRASPGAKRRGG*WWRQTILRGAP Trigger: TGGGGCGCCGCGCAGAATGGTCTGGCGCCACCACAACCCGCCTCTTCGCTTGGCGCCGGGAGAGGCGCGCGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS CAA 72 bp | CCAGGGCTCAGGACAGTCTCCCTCGCCGGCCGTGCCTaGGGCAGAGTAACCCAGGCCCGGGCCGCGCGCCTC | + |
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Preference number: 6 (lower is better) Translates to: PGLRTVSLAGRA*GRVTQARAARL Trigger: GAGGCGCGCGGCCCGGGCCTGGGTTACTCTGCCCAAGGCACGGCCGGCGAGGGAGACTGTCCTGAGCCCTGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS GCA 72 bp | CCAACCAGGGCTCAGGACAGTCTCCCTCGCCGGCCGTaGCTTGGGCAGAGTAACCCAGGCCCGGGCCGCGCG | + |
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Preference number: 6 (lower is better) Translates to: PTRAQDSLPRRP*LGQSNPGPGRA Trigger: CGCGCGGCCCGGGCCTGGGTTACTCTGCCCAAGGCACGGCCGGCGAGGGAGACTGTCCTGAGCCCTGGTTGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS CCA 72 bp | GCCTCTCCCGGCGCCAAGCGAAGAGGCGGGTTGTGGTaGCGCCAGACCATTCTGCGCGGCGCCCCACAGGCC | + |
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Preference number: 6 (lower is better) Translates to: ASPGAKRRGGLW*RQTILRGAPQA Trigger: GGCCTGTGGGGCGCCGCGCAGAATGGTCTGGCGCCACCACAACCCGCCTCTTCGCTTGGCGCCGGGAGAGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS CCA 72 bp | CGCGCCTCTCCCGGCGCCAAGCGAAGAGGCGGGTTGTaGTGGCGCCAGACCATTCTGCGCGGCGCCCCACAG | + |
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Preference number: 6 (lower is better) Translates to: RASPGAKRRGGL*WRQTILRGAPQ Trigger: CTGTGGGGCGCCGCGCAGAATGGTCTGGCGCCACCACAACCCGCCTCTTCGCTTGGCGCCGGGAGAGGCGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS CCA 72 bp | GCCAGACCATTCTGCGCGGCGCCCCACAGGCCTAGGTaGCAGATAGAATCCGCGGGCTCAGCCCGCACCGCC | + |
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Preference number: 6 (lower is better) Translates to: ARPFCAAPHRPR*QIESAGSARTA Trigger: GGCGGTGCGGGCTGAGCCCGCGGATTCTATCTGCCACCTAGGCCTGTGGGGCGCCGCGCAGAATGGTCTGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS GCA 72 bp | GCCCCCAAAGGCGCGCGACTCGCCATCGACTACGAGTaGGCCGGAGCCCCAACCAGGGCTCAGGACAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: APKGARLAIDYE*AGAPTRAQDSL Trigger: GAGACTGTCCTGAGCCCTGGTTGGGGCTCCGGCGCACTCGTAGTCGATGGCGAGTCGCGCGCCTTTGGGGGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS CCA 72 bp | CGCCTTCCCCAACCCCCGCGCCTCACAGCGCTCGGATaGCGCCCGATTCCGCAGCTCTCACCATTGCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: RLPQPPRLTALG*RPIPQLSPLLH Trigger: GTGCAGCAATGGTGAGAGCTGCGGAATCGGGCGCCATCCGAGCGCTGTGAGGCGCGGGGGTTGGGGAAGGCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS GCA 72 bp | AGCGAAGAGGCGGGTTGTGGTGGCGCCAGACCATTCTaGGCGGCGCCCCACAGGCCTAGGTGGCAGATAGAA | + |
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Preference number: 6 (lower is better) Translates to: SEEAGCGGARPF*AAPHRPRWQIE Trigger: TTCTATCTGCCACCTAGGCCTGTGGGGCGCCGCGCAGAATGGTCTGGCGCCACCACAACCCGCCTCTTCGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487431.1 |
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| CDS TCA 72 bp | TCCCGATGCACACGTGCTCCCCACCCACGAGGGCTGTaGTCCGGCCGCCTCACTTACATCTTAGAGAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SRCTRAPHPRGL*SGRLTYILESL Trigger: CAAGCTCTCTAAGATGTAAGTGAGGCGGCCGGATCACAGCCCTCGTGGGTGGGGAGCACGTGTGCATCGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495728.1 |
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| CDS GCA 72 bp | ATGCTGGGGGCTGAGGCAGTACTCTGTCCATCTGTATaGAGGGCCCACCAGCTGCTGCCTTGTAGAATTTCC | + |
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Preference number: 6 (lower is better) Translates to: MLGAEAVLCPSV*RAHQLLPCRIS Trigger: GGAAATTCTACAAGGCAGCAGCTGGTGGGCCCTGCATACAGATGGACAGAGTACTGCCTCAGCCCCCAGCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000373570.8 ENST00000493018.5 ENST00000629845.1 |
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| CDS GCA 72 bp | GGCTTTGAAGGCAGCATTAAGATGGGTCTCCGGGGATaGATTCCAGGCACAAGGACCGCAAGGTCAAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: GFEGSIKMGLRG*IPGTRTARSRQ Trigger: CTGCCTTGACCTTGCGGTCCTTGTGCCTGGAATGCATCCCCGGAGACCCATCTTAATGCTGCCTTCAAAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495728.1 |
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| CDS CCA 72 bp | ACTTCTTGCCCTCGGCTCTGGTTAGCAAGAGCATGCTaGGGGCTGAGGCAGTACTCTGTCCATCTGTATGCA | + |
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Preference number: 6 (lower is better) Translates to: TSCPRLWLARAC*GLRQYSVHLYA Trigger: TGCATACAGATGGACAGAGTACTGCCTCAGCCCCCAGCATGCTCTTGCTAACCAGAGCCGAGGGCAAGAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373570.8 |
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| CDS GCA 72 bp | TGTACTTCTTGCCCTCGGCTCTGGTTAGCAAGAGCATaGTGGGGGCTGAGGCAGTACTCTGTCCATCTGTAT | + |
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Preference number: 6 (lower is better) Translates to: CTSCPRLWLARA*WGLRQYSVHLY Trigger: ATACAGATGGACAGAGTACTGCCTCAGCCCCCAGCATGCTCTTGCTAACCAGAGCCGAGGGCAAGAAGTACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373570.8 |
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| CDS CCA 72 bp | TTACCATTACCTCGGCTCTGGTTAGCAAGAGCATGCTaGGGGCTGAGGCAGTACTCTGTCCATCTGTATGCA | + |
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Preference number: 6 (lower is better) Translates to: LPLPRLWLARAC*GLRQYSVHLYA Trigger: TGCATACAGATGGACAGAGTACTGCCTCAGCCCCCAGCATGCTCTTGCTAACCAGAGCCGAGGTAATGGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493018.5 |
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