Pregenerated sensors for RPL23A (Homo sapiens)
Ensembl gene IDs: ENSG00000198242Ensembl transcript IDs: ENST00000472628.1, ENST00000496182.5, ENST00000578181.1, ENST00000580755.1, ENST00000582736.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGCAAAATGAGGAATGTGAGGATAAGGTTTGTCAAGGATAGGGGTGCAGTCAGTTTGGTCGCTAACATATaGATCATTTGCACCCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: SKMRNVRIRFVKDRGAVSLVANI*IICTQG Trigger: CCCTTGGGTGCAAATGATGCATATGTTAGCGACCAA...ACTGACTGCACCCCTATCCTTGACAAACCTTATCCTCACATTCCTCATTTTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000578181.1 |
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| CDS-3UTR GCA 90 bp | GAAAGCAAAATGAGGAATGTGAGGATAAGGTTTGTCAAGGATAGGGGTGCAGTCAACATATGCATCATTTaGACCCAAGGGGTGAGCATT | + |
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Preference number: 4 (lower is better) Translates to: ESKMRNVRIRFVKDRGAVNICII*TQGVSI Trigger: AATGCTCACCCCTTGGGTGCAAATGATGCATATGTT...GACTGCACCCCTATCCTTGACAAACCTTATCCTCACATTCCTCATTTTGCTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000578181.1 |
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| CDS GCA 90 bp | GCGGAACTCAGCCCACGAGGCTGGGCCCACGCGGCCCACGTATACTaGAGCGTGTCCGAAACGCAGGGAGCAGCCCCGGAGCAGAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: AELSPRGWAHAAHVY*SVSETQGAAPEQSP Trigger: AGGGCTCTGCTCCGGGGCTGCTCCCTGCGTTTCGGACACGCTGCAGTATACGTGGGCCGCGTGGGCCCAGCCTCGTGGGCTGAGTTCCGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496182.5 |
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| CDS CCA 90 bp | GTGCGGGATTTAGAAATCGGTCACTTCCGGCCCCAAGAACTGCAGTaGGCCACCCTGGCCACAGGTGCATCAGTGGTTCCTTTGAAGACA | + |
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Preference number: 5 (lower is better) Translates to: VRDLEIGHFRPQELQ*ATLATGASVVPLKT Trigger: TGTCTTCAAAGGAACCACTGATGCACCTGTGGCCAGGGTGGCCCACTGCAGTTCTTGGGGCCGGAAGTGACCGATTTCTAAATCCCGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472628.1 |
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| CDS-3UTR CAA 90 bp | AGCAAAATGAGGAATGTGAGGATAAGGTTTGTCAAGGATAGGGGTGCAGTCAGTAGCAAAGATCAGGCTTaGGTCGCTAACATATGCATC | + |
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Preference number: 5 (lower is better) Translates to: SKMRNVRIRFVKDRGAVSSKDQA*VANICI Trigger: GATGCATATGTTAGCGACCAAAGCCTGATCTTTGCT...ACTGACTGCACCCCTATCCTTGACAAACCTTATCCTCACATTCCTCATTTTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000578181.1 |
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| CDS TCA 90 bp | TCTTTTCCAATAATGATTTTTCCATCATTAGCCCAGAGGACACCATaGAGCCACAAAGCCAATTCTCTTATGGGAAACACCACAGGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: SFPIMIFPSLAQRTP*SHKANSLMGNTTGH Trigger: GTGGCCTGTGGTGTTTCCCATAAGAGAATTGGCTTTGTGGCTTCATGGTGTCCTCTGGGCTAATGATGGAAAAATCATTATTGGAAAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580755.1 |
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| CDS CCA 90 bp | TGCAGCAGAAACAATCTCCTCATACTTCCAATTAGAGAAGCACACTaGACACAATTTGCGTTTGAGAAACCATCACGCAGAGTGAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: CSRNNLLILPIREAH*TQFAFEKPSRRVSE Trigger: TTCACTCACTCTGCGTGATGGTTTCTCAAACGCAAATTGTGTCCAGTGTGCTTCTCTAATTGGAAGTATGAGGAGATTGTTTCTGCTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000582736.1 |
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| CDS TCA 90 bp | AAGCACACTGGACACAATTTGCGTTTGAGAAACCATCACGCAGAGTaGGTGAATTTCCAAATTACCAATGGAGAATACCCAAATCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: KHTGHNLRLRNHHAE*VNFQITNGEYPNLF Trigger: GAAAAGATTTGGGTATTCTCCATTGGTAATTTGGAAATTCACTCACTCTGCGTGATGGTTTCTCAAACGCAAATTGTGTCCAGTGTGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000582736.1 |
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| CDS GCA 72 bp | AGCCCACGAGGCTGGGCCCACGCGGCCCACGTATACTaGAGCGTGTCCGAAACGCAGGGAGCAGCCCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: SPRGWAHAAHVY*SVSETQGAAPE Trigger: CTCCGGGGCTGCTCCCTGCGTTTCGGACACGCTGCAGTATACGTGGGCCGCGTGGGCCCAGCCTCGTGGGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496182.5 |
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| CDS CCA 72 bp | TTAGGAGGGGCAGGAGCGGAACTCAGCCCACGAGGCTaGGCCCACGCGGCCCACGTATACTGCAGCGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: LGGAGAELSPRG*AHAAHVYCSVS Trigger: GGACACGCTGCAGTATACGTGGGCCGCGTGGGCCCAGCCTCGTGGGCTGAGTTCCGCTCCTGCCCCTCCTAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496182.5 |
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| CDS CCA 72 bp | CCTCCCCCTTCCTCCTCCAGTCCTCCGGCACTTCAGTaGTTCCTTTGTTCATGTCATTCTTTTCCAATAATG | + |
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Preference number: 6 (lower is better) Translates to: PPPSSSSPPALQ*FLCSCHSFPIM Trigger: CATTATTGGAAAAGAATGACATGAACAAAGGAACCACTGAAGTGCCGGAGGACTGGAGGAGGAAGGGGGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580755.1 |
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| CDS GCA 72 bp | CTAATCAGCAAAGATCAGGCTTTGGTCGCTAACATATaGATCATTTGCACCCAAGGGGTGAGCATTAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: LISKDQALVANI*IICTQGVSIKG Trigger: CCCCTTAATGCTCACCCCTTGGGTGCAAATGATGCATATGTTAGCGACCAAAGCCTGATCTTTGCTGATTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000578181.1 |
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| CDS TCA 72 bp | ATAATGATTTTTCCATCATTAGCCCAGAGGACACCATaGAGCCACAAAGCCAATTCTCTTATGGGAAACACC | + |
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Preference number: 6 (lower is better) Translates to: IMIFPSLAQRTP*SHKANSLMGNT Trigger: GGTGTTTCCCATAAGAGAATTGGCTTTGTGGCTTCATGGTGTCCTCTGGGCTAATGATGGAAAAATCATTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000580755.1 |
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| CDS TCA 72 bp | GGACACAATTTGCGTTTGAGAAACCATCACGCAGAGTaGGTGAATTTCCAAATTACCAATGGAGAATACCCA | + |
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Preference number: 6 (lower is better) Translates to: GHNLRLRNHHAE*VNFQITNGEYP Trigger: TGGGTATTCTCCATTGGTAATTTGGAAATTCACTCACTCTGCGTGATGGTTTCTCAAACGCAAATTGTGTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000582736.1 |
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| CDS CCA 72 bp | AACAATCTCCTCATACTTCCAATTAGAGAAGCACACTaGACACAATTTGCGTTTGAGAAACCATCACGCAGA | + |
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Preference number: 6 (lower is better) Translates to: NNLLILPIREAH*TQFAFEKPSRR Trigger: TCTGCGTGATGGTTTCTCAAACGCAAATTGTGTCCAGTGTGCTTCTCTAATTGGAAGTATGAGGAGATTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000582736.1 |
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