Pregenerated sensors for RPL17 (Homo sapiens)
Ensembl gene IDs: ENSG00000265681Ensembl transcript IDs: ENST00000578528.1, ENST00000578532.5, ENST00000578966.1, ENST00000579248.5, ENST00000579408.5, ENST00000579495.1, ENST00000580210.5, ENST00000580387.5, ENST00000581305.1, ENST00000582782.5, ENST00000615479.4, ENST00000615760.4, ENST00000617346.4
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCCATTCCCGCCCATCACGTCCCTCTGCGGACCTCAGAGGCCGACTaGCCCCGGCTCCCAAAGTCAGGCCCTCCGCCACGTCCTCCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: PIPAHHVPLRTSEAD*PRLPKSGPPPRPPA Trigger: TGCGGGAGGACGTGGCGGAGGGCCTGACTTTGGGAGCCGGGGTCAGTCGGCCTCTGAGGTCCGCAGAGGGACGTGATGGGCGGGAATGGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000578528.1 |
||
| CDS CCA 90 bp | TCCAGCGAGGATTTAGTAGCCCTAGGAGTTCTCCTCCCGGGGGCCTaGAGGCCGGCGCCCCCGAAGCCAGGATGGCGGCGATGGCAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: SSEDLVALGVLLPGA*RPAPPKPGWRRWQE Trigger: CTCCTGCCATCGCCGCCATCCTGGCTTCGGGGGCGCCGGCCTCCAGGCCCCCGGGAGGAGAACTCCTAGGGCTACTAAATCCTCGCTGGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000578528.1 ENST00000578532.5 ENST00000579248.5 ENST00000579495.1 ENST00000580387.5 ENST00000615760.4 |
||
| CDS TCA 90 bp | TCTGGTACTACTTCTCAATTTCACAAACGCTACATCCTTACACCCTaGTCATCAATGCCTAAATATAAGGTGGCTGCTCAGAATTTATTA | + |
|
Preference number: 5 (lower is better) Translates to: SGTTSQFHKRYILTP*SSMPKYKVAAQNLL Trigger: TAATAAATTCTGAGCAGCCACCTTATATTTAGGCATTGATGATCAGGGTGTAAGGATGTAGCGTTTGTGAAATTGAGAAGTAGTACCAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000578966.1 ENST00000579495.1 ENST00000582782.5 |
||
| CDS CCA 72 bp | TGGAGGCCGGCGCCCCCGAAGCCAGGATGGCGGCGATaGCAGGAGGATTGGGCCCTCGGAGCAACGCAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: WRPAPPKPGWRR*QEDWALGATQE Trigger: CTCCTGCGTTGCTCCGAGGGCCCAATCCTCCTGCCATCGCCGCCATCCTGGCTTCGGGGGCGCCGGCCTCCA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000579495.1 |
||
| CDS TCA 72 bp | GCCCATCACGTCCCTCTGCGGACCTCAGAGGCCGACTaGCCCCGGCTCCCAAAGTCAGGCCCTCCGCCACGT | + |
|
Preference number: 6 (lower is better) Translates to: AHHVPLRTSEAD*PRLPKSGPPPR Trigger: ACGTGGCGGAGGGCCTGACTTTGGGAGCCGGGGTCAGTCGGCCTCTGAGGTCCGCAGAGGGACGTGATGGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000578528.1 |
||
| CDS CCA 72 bp | GATTTAGTAGCCCTAGGAGTTCTCCTCCCGGGGGCCTaGAGGCCGGCGCCCCCGAAGCCAGGATGGCGGCGA | + |
|
Preference number: 6 (lower is better) Translates to: DLVALGVLLPGA*RPAPPKPGWRR Trigger: TCGCCGCCATCCTGGCTTCGGGGGCGCCGGCCTCCAGGCCCCCGGGAGGAGAACTCCTAGGGCTACTAAATC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000578528.1 ENST00000578532.5 ENST00000579248.5 ENST00000579495.1 ENST00000580387.5 ENST00000615760.4 |
||
| CDS CAA 72 bp | GCCATCATCGCAGCCATACTTTCCCCCACCAAGGGCTaGCTTTCCCTTTTATCTTCCAGTAACTACAGCACT | + |
|
Preference number: 6 (lower is better) Translates to: AIIAAILSPTKG*LSLLSSSNYST Trigger: AGTGCTGTAGTTACTGGAAGATAAAAGGGAAAGCAAGCCCTTGGTGGGGGAAAGTATGGCTGCGATGATGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000579408.5 ENST00000580210.5 ENST00000580387.5 ENST00000581305.1 ENST00000615479.4 ENST00000617346.4 |
||
| CDS CAA 90 bp | CTAAGAAATGCCATCATCGCAGCCATACTTTCCCCCACCAAGGGCTaGCTTTCCCTTTTATCTTCCAGTAACTACAGCACTGCTTCCACA | + |
|
Preference number: 6 (lower is better) Translates to: LRNAIIAAILSPTKG*LSLLSSSNYSTAST Trigger: TGTGGAAGCAGTGCTGTAGTTACTGGAAGATAAAAGGGAAAGCAAGCCCTTGGTGGGGGAAAGTATGGCTGCGATGATGGCATTTCTTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000579408.5 ENST00000580210.5 ENST00000580387.5 ENST00000581305.1 ENST00000615479.4 ENST00000617346.4 |
||
| CDS CCA 72 bp | ATTTTTGGTATCTTATGCCAAGCCCCAAGTAGGAAATaGGTATCTACCTCCTGTCCACTTACATTTCGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: IFGILCQAPSRK*VSTSCPLTFRG Trigger: CCCACGAAATGTAAGTGGACAGGAGGTAGATACCCATTTCCTACTTGGGGCTTGGCATAAGATACCAAAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000578966.1 ENST00000579495.1 ENST00000581305.1 |
||