Pregenerated sensors for RPEL1 (Homo sapiens)

Ensembl gene IDs: ENSG00000235376

Ensembl transcript IDs: ENST00000441178.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 90 bp	CAGGTGGGTTCGAACCTATACTGCACCCTTACTAGCTATATGACCTaGAGCAGGTCAGGCAACCTTCCTGAGACTCAGTTTTTGTCAACT	+
Preference number: 2 (lower is better) Translates to: QVGSNLYCTLTSYMT*SRSGNLPETQFLST Trigger: AGTTGACAAAAACTGAGTCTCAGGAAGGTTGCCTGACCTGCTCAAGGTCATATAGCTAGTAAGGGTGCAGTATAGGTTCGAACCCACCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441178.2
CDS-3UTR TCA 90 bp	ACCTGGAAGAGACAAGGCCATGAAAAGTGTATAGCCTTTGAGGAGCCCGTCAATAAAGTGTATAGCCTTTaGGGAGCCCGTCAATCCCTT	+
Preference number: 4 (lower is better) Translates to: TWKRQGHEKCIAFEEPVNKVYSL*GARQSL Trigger: AAGGGATTGACGGGCTCCTCAAAGGCTATACACTTT...ATTGACGGGCTCCTCAAAGGCTATACACTTTTCATGGCCTTGTCTCTTCCAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441178.2
CDS-3UTR TCA 90 bp	AAGAGACAAGGCCATGAAAAGTGTATAGCCTTTGAGGAGCCCGTCAATCCCTTCGTCAGGCAACCTTCCTaGGACTCAGTTTTTGTCAAC	+
Preference number: 4 (lower is better) Translates to: KRQGHEKCIAFEEPVNPFVRQPS*DSVFVN Trigger: GTTGACAAAAACTGAGTCTCAGGAAGGTTGCCTGAC...GAAGGGATTGACGGGCTCCTCAAAGGCTATACACTTTTCATGGCCTTGTCTCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000441178.2
CDS-3UTR CCA 90 bp	AAGAGACAAGGCCATGAAAAGTGTATAGCCTTTGAGGAGCCCGTCAATCCCTTCCTTCAGCTCGTGCTCTaGAAACTGTTAGGGAACACT	+
Preference number: 4 (lower is better) Translates to: KRQGHEKCIAFEEPVNPFLQLVL*KLLGNT Trigger: AGTGTTCCCTAACAGTTTCCAGAGCACGAGCTGAAG...GAAGGGATTGACGGGCTCCTCAAAGGCTATACACTTTTCATGGCCTTGTCTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441178.2
3UTR CAA 72 bp	TCGAACCTATACTGCACCCTTACTAGCTATATGACCTaGAGCAGGTCAGGCAACCTTCCTGAGACTCAGTTT	+
Preference number: 4 (lower is better) Translates to: SNLYCTLTSYMT*SRSGNLPETQF Trigger: AAACTGAGTCTCAGGAAGGTTGCCTGACCTGCTCAAGGTCATATAGCTAGTAAGGGTGCAGTATAGGTTCGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441178.2
CDS-3UTR TCA 90 bp	CATGAAAAGTGTATAGCCTTTGAGGAGCCCGTCAATCCCTTCAGCTCGTGCTCTGCCTTAGAATTATCCTaGGGATTTGTTGACAACATA	+
Preference number: 4 (lower is better) Translates to: HEKCIAFEEPVNPFSSCSALELS*GFVDNI Trigger: TATGTTGTCAACAAATCCTCAGGATAATTCTAAGGC...AGAGCACGAGCTGAAGGGATTGACGGGCTCCTCAAAGGCTATACACTTTTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441178.2
CDS-3UTR CAA 90 bp	CATGAAAAGTGTATAGCCTTTGAGGAGCCCGTCAATCCCTTCAGCTCGTGCTCTACTAGCTATATGACCTaGAGCAGGTCAGGCAACCTT	+
Preference number: 5 (lower is better) Translates to: HEKCIAFEEPVNPFSSCSTSYMT*SRSGNL Trigger: AAGGTTGCCTGACCTGCTCAAGGTCATATAGCTAGT...AGAGCACGAGCTGAAGGGATTGACGGGCTCCTCAAAGGCTATACACTTTTCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441178.2

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