Pregenerated sensors for RPE (Homo sapiens)
Ensembl gene IDs: ENSG00000197713Ensembl transcript IDs: ENST00000354506.10, ENST00000359429.11, ENST00000429907.5, ENST00000429921.5, ENST00000454822.5
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCACAAAGCGCAAGCTCTAGTCTGTaGTTAAGTGTTAGCATTCTT | + |
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Preference number: 2 (lower is better) Translates to: SICRVLLVIKCDVFMAQSASSSL*LSVSIL Trigger: AAGAATGCTAACACTTAAGCACAGACTAGAGCTTGC...GCTTTGTGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| 3UTR CAA 90 bp | GGTTACTCAAGTTGTACTACCCACATAACTGAAAATATTGGCCATTaGGCCTTATCTGTGAGATTTGACACTAAGTTTTTGTTAGAGATT | + |
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Preference number: 2 (lower is better) Translates to: GYSSCTTHITENIGH*ALSVRFDTKFLLEI Trigger: AATCTCTAACAAAAACTTAGTGTCAAATCTCACAGATAAGGCCAAATGGCCAATATTTTCAGTTATGTGGGTAGTACAACTTGAGTAACC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000354506.10 ENST00000359429.11 |
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| CDS-3UTR CCA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGAGAGCGTCACCCCGATTaGGCGCGCAGTTTTGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: GPARKGQSEFNPILPPNRERHPD*ARSFGP Trigger: GGGGCCAAAACTGCGCGCCCAATCGGGGTGACGCTC...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000354506.10 |
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| CDS-3UTR TCA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGAACCTGCAATGGGCCCTaGCTGTGCCACTGCACTTCA | + |
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Preference number: 4 (lower is better) Translates to: GPARKGQSEFNPILPPNRTCNGP*LCHCTS Trigger: TGAAGTGCAGTGGCACAGTCAGGGCCCATTGCAGGT...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429921.5 ENST00000454822.5 |
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| CDS-3UTR CCA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGAAAGGCCAACCTGCAATaGGCCCTGACTGTGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: GPARKGQSEFNPILPPNRKANLQ*ALTVPL Trigger: CAGTGGCACAGTCAGGGCCCATTGCAGGTTGGCCTT...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429921.5 ENST00000454822.5 |
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| CDS-3UTR TCA 90 bp | GTTATTTCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCAACCTGCAATGGGCCCTaGCTGTGCCACTGCACTTCA | + |
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Preference number: 4 (lower is better) Translates to: VISICRVLLVIKCDVFMATCNGP*LCHCTS Trigger: TGAAGTGCAGTGGCACAGTCAGGGCCCATTGCAGGT...TGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGAAATAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429921.5 |
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| CDS-3UTR CCA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGAAATGCGACGTATTCATaGCACAAAGCTTTCCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: GPARKGQSEFNPILPPNRNATYS*HKAFPS Trigger: GCTTGGGAAAGCTTTGTGCCATGAATACGTCGCATT...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR TCA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGATACTACCCACATAACTaGAAATATTGGCCATTTGGC | + |
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Preference number: 4 (lower is better) Translates to: GPARKGQSEFNPILPPNRYYPHN*KYWPFG Trigger: GCCAAATGGCCAATATTTTCAGTTATGTGGGTAGTA...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000354506.10 ENST00000359429.11 |
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| CDS-3UTR GCA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGAGCAAGCTCTAGTCTGTaGTTAAGTGTTAGCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: GPARKGQSEFNPILPPNRASSSL*LSVSIL Trigger: AAGAATGCTAACACTTAAGCACAGACTAGAGCTTGC...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR CCA 90 bp | TCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCACAAAGCAATGCGACGTATTCATaGCACAAAGCTTTCCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: SICRVLLVIKCDVFMAQSNATYS*HKAFPS Trigger: GCTTGGGAAAGCTTTGTGCCATGAATACGTCGCATT...GCTTTGTGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR GCA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGATTGCTTGTTATTAAATaGGACGTATTCATGGCACAA | + |
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Preference number: 4 (lower is better) Translates to: GPARKGQSEFNPILPPNRLLVIK*DVFMAQ Trigger: TTGTGCCATGAATACGTCGCATTTAATAACAAGCAA...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR CCA 90 bp | TCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCACAAAGCGTTAGCTCCTGCCTTTaGCATCATATCTTCCATGAA | + |
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Preference number: 4 (lower is better) Translates to: SICRVLLVIKCDVFMAQSVSSCL*HHIFHE Trigger: TTCATGGAAGATATGATGCCAAAGGCAGGAGCTAAC...GCTTTGTGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000354506.10 |
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| CDS-3UTR TCA 90 bp | TCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCACAAAGCTACTACCCACATAACTaGAAATATTGGCCATTTGGC | + |
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Preference number: 4 (lower is better) Translates to: SICRVLLVIKCDVFMAQSYYPHN*KYWPFG Trigger: GCCAAATGGCCAATATTTTCAGTTATGTGGGTAGTA...GCTTTGTGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000354506.10 ENST00000359429.11 |
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| CDS-3UTR TCA 90 bp | TTTTACCTTGTAATGCAGGAAGAAACCCAAGCAAGCTCTAGTCTGTGCTTAAGTACACCAGTTTTAAAATaGGCCACAAACAGTAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: FYLVMQEETQASSSLCLSTPVLK*ATNSKA Trigger: GGCTTTACTGTTTGTGGCTCATTTTAAAACTGGTGT...ACTTAAGCACAGACTAGAGCTTGCTTGGGTTTCTTCCTGCATTACAAGGTAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000354506.10 ENST00000359429.11 |
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| CDS-3UTR GCA 90 bp | TTTTACCTTGTAATGCAGGAAGAAACCCAAGCAAGCTCTAGTCTGTGCTTAAGTGCAAGCTCTAGTCTGTaGTTAAGTGTTAGCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: FYLVMQEETQASSSLCLSASSSL*LSVSIL Trigger: AAGAATGCTAACACTTAAGCACAGACTAGAGCTTGC...ACTTAAGCACAGACTAGAGCTTGCTTGGGTTTCTTCCTGCATTACAAGGTAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR GCA 90 bp | TCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCACAAAGCCTATATGCCGTGTGTTaGTTGTTATTAAATGCGACG | + |
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Preference number: 4 (lower is better) Translates to: SICRVLLVIKCDVFMAQSLYAVC*LLLNAT Trigger: CGTCGCATTTAATAACAAGCAACACACGGCATATAG...GCTTTGTGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR GCA 90 bp | TTTTACCTTGTAATGCAGGAAGAAACCCAAGCAAGCTCTAGTCTGTGCTTAAGTCTATATGCCGTGTGTTaGTTGTTATTAAATGCGACG | + |
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Preference number: 4 (lower is better) Translates to: FYLVMQEETQASSSLCLSLYAVC*LLLNAT Trigger: CGTCGCATTTAATAACAAGCAACACACGGCATATAG...ACTTAAGCACAGACTAGAGCTTGCTTGGGTTTCTTCCTGCATTACAAGGTAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR GCA 90 bp | GTTATTTCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCAGCAAGCTCTAGTCTGTaGTTAAGTGTTAGCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: VISICRVLLVIKCDVFMAASSSL*LSVSIL Trigger: AAGAATGCTAACACTTAAGCACAGACTAGAGCTTGC...TGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGAAATAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR GCA 90 bp | TTTTACCTTGTAATGCAGGAAGAAACCCAAGCAAGCTCTAGTCTGTGCTTAAGTTTGCTTGTTATTAAATaGGACGTATTCATGGCACAA | + |
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Preference number: 4 (lower is better) Translates to: FYLVMQEETQASSSLCLSLLVIK*DVFMAQ Trigger: TTGTGCCATGAATACGTCGCATTTAATAACAAGCAA...ACTTAAGCACAGACTAGAGCTTGCTTGGGTTTCTTCCTGCATTACAAGGTAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR CAA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGAATTGGGCGCGCAGTTTaGGCCCCGCCCCTTCTCCGT | + |
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Preference number: 5 (lower is better) Translates to: GPARKGQSEFNPILPPNRIGRAV*APPLLR Trigger: ACGGAGAAGGGGCGGGGCCAAAACTGCGCGCCCAAT...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000354506.10 |
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| CDS-3UTR CAA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGAAGAGCGTCACCCCGATaGGGCGCGCAGTTTTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: GPARKGQSEFNPILPPNRRASPR*GAQFWP Trigger: GGGCCAAAACTGCGCGCCCAATCGGGGTGACGCTCT...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000354506.10 |
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| CDS-3UTR CAA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGAAAATCACTGCTATCTTaGGGACTAAACACAGGCTAC | + |
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Preference number: 5 (lower is better) Translates to: GPARKGQSEFNPILPPNRKSLLS*GLNTGY Trigger: GTAGCCTGTGTTTAGTCCCAAAGATAGCAGTGATTT...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000354506.10 ENST00000359429.11 |
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| CDS-3UTR CAA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGATATGCCGTGTGTTGCTaGTTATTAAATGCGACGTAT | + |
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Preference number: 5 (lower is better) Translates to: GPARKGQSEFNPILPPNRYAVCC*LLNATY Trigger: ATACGTCGCATTTAATAACAAGCAACACACGGCATA...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR CAA 90 bp | GGTCCAGCTAGAAAGGGGCAGTCAGAATTCAACCCAATATTACCTCCAAACAGATCTATATGCCGTGTGTaGCTTGTTATTAAATGCGAC | + |
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Preference number: 5 (lower is better) Translates to: GPARKGQSEFNPILPPNRSICRV*LVIKCD Trigger: GTCGCATTTAATAACAAGCAACACACGGCATATAGA...TCTGTTTGGAGGTAATATTGGGTTGAATTCTGACTGCCCCTTTCTAGCTGGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR CAA 90 bp | TCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCACAAAGCAAATCACTGCTATCTTaGGGACTAAACACAGGCTAC | + |
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Preference number: 5 (lower is better) Translates to: SICRVLLVIKCDVFMAQSKSLLS*GLNTGY Trigger: GTAGCCTGTGTTTAGTCCCAAAGATAGCAGTGATTT...GCTTTGTGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000354506.10 ENST00000359429.11 |
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| CDS-3UTR CAA 90 bp | TTTTACCTTGTAATGCAGGAAGAAACCCAAGCAAGCTCTAGTCTGTGCTTAAGTTATGCCGTGTGTTGCTaGTTATTAAATGCGACGTAT | + |
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Preference number: 5 (lower is better) Translates to: FYLVMQEETQASSSLCLSYAVCC*LLNATY Trigger: ATACGTCGCATTTAATAACAAGCAACACACGGCATA...ACTTAAGCACAGACTAGAGCTTGCTTGGGTTTCTTCCTGCATTACAAGGTAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR CAA 90 bp | TTTTACCTTGTAATGCAGGAAGAAACCCAAGCAAGCTCTAGTCTGTGCTTAAGTTCTATATGCCGTGTGTaGCTTGTTATTAAATGCGAC | + |
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Preference number: 5 (lower is better) Translates to: FYLVMQEETQASSSLCLSSICRV*LVIKCD Trigger: GTCGCATTTAATAACAAGCAACACACGGCATATAGA...ACTTAAGCACAGACTAGAGCTTGCTTGGGTTTCTTCCTGCATTACAAGGTAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR CAA 90 bp | TCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCACAAAGCGAAAATATTGGCCATTaGGCCTTATCTGTGAGATTT | + |
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Preference number: 5 (lower is better) Translates to: SICRVLLVIKCDVFMAQSENIGH*ALSVRF Trigger: AAATCTCACAGATAAGGCCAAATGGCCAATATTTTC...GCTTTGTGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000354506.10 ENST00000359429.11 |
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| CDS-3UTR CAA 90 bp | TCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCACAAAGCCTATTTCTAGCTAATTaGGTCATTCTTTGCCATAGC | + |
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Preference number: 5 (lower is better) Translates to: SICRVLLVIKCDVFMAQSLFLAN*VILCHS Trigger: GCTATGGCAAAGAATGACCAAATTAGCTAGAAATAG...GCTTTGTGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000354506.10 ENST00000359429.11 |
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| CDS-3UTR CAA 90 bp | GTTATTTCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCATATGCCGTGTGTTGCTaGTTATTAAATGCGACGTAT | + |
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Preference number: 5 (lower is better) Translates to: VISICRVLLVIKCDVFMAYAVCC*LLNATY Trigger: ATACGTCGCATTTAATAACAAGCAACACACGGCATA...TGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGAAATAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000354506.10 ENST00000359429.11 ENST00000429921.5 |
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| CDS-3UTR CAA 90 bp | GTTATTTCTATATGCCGTGTGTTGCTTGTTATTAAATGCGACGTATTCATGGCACTATTTCTAGCTAATTaGGTCATTCTTTGCCATAGC | + |
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Preference number: 5 (lower is better) Translates to: VISICRVLLVIKCDVFMALFLAN*VILCHS Trigger: GCTATGGCAAAGAATGACCAAATTAGCTAGAAATAG...TGCCATGAATACGTCGCATTTAATAACAAGCAACACACGGCATATAGAAATAAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000354506.10 ENST00000359429.11 |
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| CDS TCA 72 bp | TCCGTATTTTGGAAAAATTTCTCACTTCCAAGGCCGTaGAACTTAATGATCTTCCAAAGGGCTCTGCACATT | + |
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Preference number: 6 (lower is better) Translates to: SVFWKNFSLPRP*NLMIFQRALHI Trigger: AATGTGCAGAGCCCTTTGGAAGATCATTAAGTTTCACGGCCTTGGAAGTGAGAAATTTTTCCAAAATACGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000429907.5 |
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