Pregenerated sensors for RPA3 (Homo sapiens)
Ensembl gene IDs: ENSG00000106399Ensembl transcript IDs: ENST00000223129.8, ENST00000396682.6, ENST00000406109.5, ENST00000462723.1, ENST00000463632.1
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTaGGTAGGTCTAAATCTTGACCTTATGGCTATGAAATTTCAAGTT | + |
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Preference number: 2 (lower is better) Translates to: GKGEQILNTAGPRFY*VGLNLDLMAMKFQV Trigger: AACTTGAAATTTCATAGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| 3UTR CCA 72 bp | GTAGGGTATCAAGGAAATAATTATCAAGGTATAGTTTaGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCC | + |
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Preference number: 3 (lower is better) Translates to: VGYQGNNYQGIV*EKVSKSLTQLA Trigger: GGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACTATACCTTGATAATTATTTCCTTGATACCCTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAGGTGCGGCGGGGGACTaGGGGGCCAGCCTCAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLGAAGD*GASLRY Trigger: GTACCTGAGGCTGGCCCCGCAGTCCCCCGCCGCACC...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTGAAGCTCCGGTGCTaGTGCGGCGGGGGACTGCGG | + |
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Preference number: 4 (lower is better) Translates to: SLGKGEQILNTAGPRFYLVKLRC*CGGGLR Trigger: CCGCAGTCCCCCGCCGCACCAGCACCGGAGCTTCAC...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGCCCGGAAGTGGGGTGTaGAGCTCCGGTGCTGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: SLGKGEQILNTAGPRFYLPGSGV*SSGAGA Trigger: CGCACCAGCACCGGAGCTTCACACCCCACTTCCGGG...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | GGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTGTCGGCACTAGCTGCTaGCGCGGTGCTGTGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: GKGEQILNTAGPRFYLVGVGTSC*RGAVGA Trigger: AGCACCCACAGCACCGCGGCAGCAGCTAGTGCCGAC...ACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAGTGGCGTCGGGGTTGTaGTACCCGCCCCCTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLVASGL*YPPPWR Trigger: TCTCCAAGGGGGCGGGTATCACAACCCCGACGCCAC...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGTTCCCGGCGGTGACTTaGCCCCGGAAGTGGGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: SLGKGEQILNTAGPRFYLFPAVT*PRKWGV Trigger: CACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAA...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTACAGGATTCCCGGCGGTaGCTTGACCCCGGAAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLQDSRR*LDPGSG Trigger: CCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTG...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTGGAGTCGGCACTAGCTaGTGCCGCGGTGCTGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: NTAGPRFYLVGLNLDLMAGVGTS*CRGAVG Trigger: ACCCACAGCACCGCGGCAGCAGCTAGTGCCGACTCC...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | CTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGGTGTGAAGCTCCGGTaGTGGTGCGGCGGGGGACTG | + |
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Preference number: 4 (lower is better) Translates to: LNTAGPRFYLVGLNLDLMGVKLR*WCGGGL Trigger: CAGTCCCCCGCCGCACCAGCACCGGAGCTTCACACC...CATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTACCGCCCCCTTGGAGATaGGCAGCGGGGTCATCAGTG | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLPPPWR*AAGSSV Trigger: CACTGATGACCCCGCTGCCCATCTCCAAGGGGGCGG...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGCGGCGTCCCGGAAGTTaGCAGATACAGGGCGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: SLGKGEQILNTAGPRFYLRRPGS*QIQGER Trigger: CCTCTCGCCCTGTATCTGTCAACTTCCGGGACGCCG...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | GCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTATGAAAAAACCCACGGACGACTaGAACTGTGCGCCCCGCGGG | + |
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Preference number: 4 (lower is better) Translates to: AGPRFYLVGLNLDLMAMKKPTDD*NCAPRG Trigger: CCCGCGGGGCGCACAGTTTCAGTCGTCCGTGGGTTT...TTTCATAGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGC 51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTCCCTCTTGCCAGTTCTaGGTGGGAGGCGCGGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: NTAGPRFYLVGLNLDLMAPSCQF*VGGAGV Trigger: AACTCCCGCGCCTCCCACGCAGAACTGGCAAGAGGG...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGCCGCGGTGCTGTGGGTaGTGCGTACCAGCTGTTCAC | + |
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Preference number: 4 (lower is better) Translates to: SLGKGEQILNTAGPRFYLPRCCG*CVPAVH Trigger: GTGAACAGCTGGTACGCAGCACCCACAGCACCGCGG...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | GGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTTGCCAGTTCTGCGTaGGAGGCGCGGGAGTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: GKGEQILNTAGPRFYLVGLASSA*EAREFC Trigger: GCAAAACTCCCGCGCCTCCCACGCAGAACTGGCAAG...ACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | CTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTGCCGCGGTGCTGTaGGTGCTGCGTACCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LNTAGPRFYLVGLNLDLMAAAVL*VLRTSC Trigger: ACAGCTGGTACGCAGCACCCACAGCACCGCGGCAGC...CATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTACAGGGCGAGAGGCAGTaGAGGCGGGACTTGGATAGG | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLQGERQ*RRDLDR Trigger: CCTATCCAAGTCCCGCCTCCACTGCCTCTCGCCCTG...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTACCCCGCGGGTGTCTATaGGGCAGATTTCTCGGCACC | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLPRGCL*GRFLGT Trigger: GGTGCCGAGAAATCTGCCCCATAGACACCCGCGGGG...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTACAATCGCGCTGTCTCTaGAAGGGGTGGAGAAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLQSRCL*KGWRRG Trigger: GCCCCTTCTCCACCCCTTTCAGAGACAGCGCGATTG...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAGGACGACTGAAACTGTaGGCCCCGCGGGTGTCTATG | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLGRLKL*APRVSM Trigger: CATAGACACCCGCGGGGCGCACAGTTTCAGTCGTCC...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAGTGGAGGCGGGACTTaGATAGGGGCGGAACCTGAG | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLSGGGT*IGAEPE Trigger: CTCAGGTTCCGCCCCTATCCAAGTCCCGCCTCCACT...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGGGTGGAGAAGGGGCTaGATGAGTCCGGAAGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: SLGKGEQILNTAGPRFYLGWRRG*MSPEVE Trigger: CTCCACTTCCGGACTCATCCAGCCCCTTCTCCACCC...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | CTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGTCCAAGACTGCGGCTaGCGGGAAACCCACGGACGA | + |
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Preference number: 4 (lower is better) Translates to: LNTAGPRFYLVGLNLDLMVQDCG*RETHGR Trigger: TCGTCCGTGGGTTTCCCGCCAGCCGCAGTCTTGGAC...CATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGGGAGTTTTGCGGAATaGTACGTGGTGTGGCGTCGG | + |
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Preference number: 4 (lower is better) Translates to: SLGKGEQILNTAGPRFYLGSFAE*YVVWRR Trigger: CCGACGCCACACCACGTATCATTCCGCAAAACTCCC...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | CTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGTCTCGCCTTCCCTCTTaGCAGTTCTGCGTGGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: LNTAGPRFYLVGLNLDLMSRLPS*QFCVGG Trigger: GCCTCCCACGCAGAACTGGCAAGAGGGAAGGCGAGA...CATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTGAAGTGGAGATTGGCTaGTTAGTGACGCGCGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: NTAGPRFYLVGLNLDLMAEVEIG*LVTRGV Trigger: GACGCCGCGCGTCACTAAGCAGCCAATCTCCACTTC...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTATCCGGAAGTGGAGATTaGCTGCTTAGTGACGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLSGSGD*LLSDAR Trigger: CCGCGCGTCACTAAGCAGCCAATCTCCACTTCCGGA...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | GGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTAGACAGGCTTGTCGATaGATTGAGCTAGCATGCCGG | + |
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Preference number: 4 (lower is better) Translates to: GKGEQILNTAGPRFYLVGRQACR*IELACR Trigger: CCGGCATGCTAGCTCAATTCATCGACAAGCCTGTCT...ACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAGAGGCGCGGGAGTTTTaGGGAATGATACGTGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLEAREF*GMIRGV Trigger: CACACCACGTATCATTCCGCAAAACTCCCGCGCCTC...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTTTGCGGAATGATACGTaGTGTGGCGTCGGGGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: NTAGPRFYLVGLNLDLMALRNDT*CGVGVV Trigger: CACAACCCCGACGCCACACCACGTATCATTCCGCAA...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | CTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGATAGGGGCGGAACCTaGGACTACCTTTCTGCGATC | + |
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Preference number: 4 (lower is better) Translates to: LNTAGPRFYLVGLNLDLMDRGGT*DYLSAI Trigger: GATCGCAGAAAGGTAGTCTCAGGTTCCGCCCCTATC...CATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | GCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTATGAAAATTATGGTCCAAGACTaGGGCTGGCGGGAAACCCAC | + |
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Preference number: 4 (lower is better) Translates to: AGPRFYLVGLNLDLMAMKIMVQD*GWRETH Trigger: GTGGGTTTCCCGCCAGCCGCAGTCTTGGACCATAAT...TTTCATAGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | GCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTATGAAAGTACCAGCTGTTCACTaGTGTCTCGCCTTCCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: AGPRFYLVGLNLDLMAMKVPAVH*CLAFPL Trigger: AAGAGGGAAGGCGAGACAGCAGTGAACAGCTGGTAC...TTTCATAGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | GCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTATGAAATTGCCACTTGTTGGCTaGGGGTCGATTTACTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: AGPRFYLVGLNLDLMAMKLPLVG*GSIYSL Trigger: AAGGGAGTAAATCGACCCTCAGCCAACAAGTGGCAA...TTTCATAGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | GCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTATGAAATTTCTCTATCCCAGGTaGTCTCCTGCTTGGTTAGGG | + |
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Preference number: 4 (lower is better) Translates to: AGPRFYLVGLNLDLMAMKFLYPR*SPAWLG Trigger: CCCTAACCAAGCAGGAGAGCACCTGGGATAGAGAAA...TTTCATAGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAAGATGTACACAAGATaGTGGCCTTGGCGGTTACTC | + |
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Preference number: 4 (lower is better) Translates to: KGEQILNTAGPRFYLVGLKMYTR*WPWRLL Trigger: GAGTAACCGCCAAGGCCACCATCTTGTGTACATCTT...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CCA 90 bp | CTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTTTTGCCACTTGTTaGCTGAGGGTCGATTTACTC | + |
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Preference number: 4 (lower is better) Translates to: LNTAGPRFYLVGLNLDLMAFATC*LRVDLL Trigger: GAGTAAATCGACCCTCAGCCAACAAGTGGCAAAAGC...CATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTCATTGTTGCAGGAGATaGAGCAAAAGGAAACTGTAC | + |
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Preference number: 4 (lower is better) Translates to: NTAGPRFYLVGLNLDLMAHCCRR*SKRKLY Trigger: GTACAGTTTCCTTTTGCTTCATCTCCTGCAACAATG...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR GCA 90 bp | CTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGATTTACTCCCTTAGCTaGGTCACTCTACTTTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LNTAGPRFYLVGLNLDLMIYSLS*VTLLSP Trigger: TGGAGAAAGTAGAGTGACGCAGCTAAGGGAGTAAAT...CATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTAACTGTACACAGATCTaGAACTATTGTATTCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: NTAGPRFYLVGLNLDLMANCTQI*NYCIPC Trigger: ACAGGGAATACAATAGTTTCAGATCTGTGTACAGTT...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGGTAGGTCTAAATCTTaGCCTTATGGCTATGAAATT | + |
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Preference number: 4 (lower is better) Translates to: SLGKGEQILNTAGPRFYLGRSKS*PYGYEI Trigger: AATTTCATAGCCATAAGGTCAAGATTTAGACCTACC...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| 3UTR CAA 72 bp | GAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTaGGTAGGTCTAAATCTTGACCTTATGGCTATGAAA | + |
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Preference number: 4 (lower is better) Translates to: EQILNTAGPRFY*VGLNLDLMAMK Trigger: TTTCATAGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR TCA 90 bp | CTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGTAGTAATCAGTAAGTaGACATTCTTGAGCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: LNTAGPRFYLVGLNLDLMVVISK*TFLSTF Trigger: GAAAGTGCTCAAGAATGTTCACTTACTGATTACTAC...CATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS TCA 90 bp | ATCGCGCTGTCTCTTTCTGCGATCACAGGATTCCCGGCGGTGACTTaGCCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTGGTGCGGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: IALSLSAITGFPAVT*PRKWGVKLRCWCGG Trigger: CCCGCCGCACCAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGAGACAGCGCGAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396682.6 |
||
| CDS TCA 90 bp | GGTGGGATGAATCTTTCTGCGATCACAGGATTCCCGGCGGTGACTTaGCCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTGGTGCGGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: GGMNLSAITGFPAVT*PRKWGVKLRCWCGG Trigger: CCCGCCGCACCAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGATTCATCCCACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000406109.5 ENST00000463632.1 |
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| CDS CCA 90 bp | AAAAGAGCTAGGCGGGAGTCGGCACTAGCTGCTGCCGCGGTGCTGTaGGTGCTGCGTACCAGCTGTTCACTGCTGTCTCGCCTTCCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: KRARRESALAAAAVL*VLRTSCSLLSRLPS Trigger: AGAGGGAAGGCGAGACAGCAGTGAACAGCTGGTACGCAGCACCCACAGCACCGCGGCAGCAGCTAGTGCCGACTCCCGCCTAGCTCTTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS TCA 90 bp | GGAAGTGGAGATTGGCTGCTTAGTGACGCGCGGCGTCCCGGAAGTTaGCAGATACAGGGCGAGAGGCAGTGGAGGCGGGACTTGGATAGG | + |
|
Preference number: 5 (lower is better) Translates to: GSGDWLLSDARRPGS*QIQGERQWRRDLDR Trigger: CCTATCCAAGTCCCGCCTCCACTGCCTCTCGCCCTGTATCTGTCAACTTCCGGGACGCCGCGCGTCACTAAGCAGCCAATCTCCACTTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS GCA 90 bp | AAGGGGTGGAGAAGGGGCTGGATGAGTCCGGAAGTGGAGATTGGCTaGTTAGTGACGCGCGGCGTCCCGGAAGTTGACAGATACAGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: KGWRRGWMSPEVEIG*LVTRGVPEVDRYRA Trigger: CGCCCTGTATCTGTCAACTTCCGGGACGCCGCGCGTCACTAAGCAGCCAATCTCCACTTCCGGACTCATCCAGCCCCTTCTCCACCCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS CCA 90 bp | CCAGCTGTTCACTGCTGTCTCGCCTTCCCTCTTGCCAGTTCTGCGTaGGAGGCGCGGGAGTTTTGCGGAATGATACGTGGTGTGGCGTCG | + |
|
Preference number: 5 (lower is better) Translates to: PAVHCCLAFPLASSA*EAREFCGMIRGVAS Trigger: CGACGCCACACCACGTATCATTCCGCAAAACTCCCGCGCCTCCCACGCAGAACTGGCAAGAGGGAAGGCGAGACAGCAGTGAACAGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS GCA 90 bp | CGTACCAGCTGTTCACTGCTGTCTCGCCTTCCCTCTTGCCAGTTCTaGGTGGGAGGCGCGGGAGTTTTGCGGAATGATACGTGGTGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: RTSCSLLSRLPSCQF*VGGAGVLRNDTWCG Trigger: GCCACACCACGTATCATTCCGCAAAACTCCCGCGCCTCCCACGCAGAACTGGCAAGAGGGAAGGCGAGACAGCAGTGAACAGCTGGTACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS GCA 90 bp | TGGGTGCTGCGTACCAGCTGTTCACTGCTGTCTCGCCTTCCCTCTTaGCAGTTCTGCGTGGGAGGCGCGGGAGTTTTGCGGAATGATACG | + |
|
Preference number: 5 (lower is better) Translates to: WVLRTSCSLLSRLPS*QFCVGGAGVLRNDT Trigger: CGTATCATTCCGCAAAACTCCCGCGCCTCCCACGCAGAACTGGCAAGAGGGAAGGCGAGACAGCAGTGAACAGCTGGTACGCAGCACCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS CCA 90 bp | CCGGAAGTTGACAGATACAGGGCGAGAGGCAGTGGAGGCGGGACTTaGATAGGGGCGGAACCTGAGACTACCTTTCTGCGATCACAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: PEVDRYRARGSGGGT*IGAEPETTFLRSQD Trigger: ATCCTGTGATCGCAGAAAGGTAGTCTCAGGTTCCGCCCCTATCCAAGTCCCGCCTCCACTGCCTCTCGCCCTGTATCTGTCAACTTCCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTGTGATACCCGCCCCCTaGGAGATGGGCAGCGGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: NTAGPRFYLVGLNLDLMAVIPAP*EMGSGV Trigger: GACCCCGCTGCCCATCTCCAAGGGGGCGGGTATCAC...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS CCA 90 bp | GTGAACATTCTTGAGCACTTTCTCTATCCCAGGTGCTCTCCTGCTTaGTTAGGGATGCTCCAGATTCCTGGGCCTTGCCCACACCATTTC | + |
|
Preference number: 5 (lower is better) Translates to: VNILEHFLYPRCSPA*LGMLQIPGPCPHHF Trigger: GAAATGGTGTGGGCAAGGCCCAGGAATCTGGAGCATCCCTAACCAAGCAGGAGAGCACCTGGGATAGAGAAAGTGCTCAAGAATGTTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | GGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTATTCCCGGCGGTGACTaGACCCCGGAAGTGGGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: GKGEQILNTAGPRFYLVGIPGGD*TPEVGC Trigger: ACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAAT...ACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | AAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAGTCTCGCCTTCCCTCTaGCCAGTTCTGCGTGGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: KGEQILNTAGPRFYLVGLVSPSL*PVLRGR Trigger: CCTCCCACGCAGAACTGGCAAGAGGGAAGGCGAGAC...TAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTGCGGCGTCCCGGAAGTaGACAGATACAGGGCGAGAG | + |
|
Preference number: 5 (lower is better) Translates to: NTAGPRFYLVGLNLDLMAAASRK*TDTGRE Trigger: CTCTCGCCCTGTATCTGTCAACTTCCGGGACGCCGC...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS GCA 90 bp | AGGTGCTCTCCTGCTTGGTTAGGGATGCTCCAGATTCCTGGGCCTTaGCCACACCATTTCAGCCTCATTTTCCTTTTGTGTGAAATGTTA | + |
|
Preference number: 5 (lower is better) Translates to: RCSPAWLGMLQIPGP*PHHFSLIFLLCEML Trigger: TAACATTTCACACAAAAGGAAAATGAGGCTGAAATGGTGTGGGCAAGGCCCAGGAATCTGGAGCATCCCTAACCAAGCAGGAGAGCACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGGAGGCGCGGGAGTTTaGCGGAATGATACGTGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: SLGKGEQILNTAGPRFYLGGAGV*RNDTWC Trigger: ACACCACGTATCATTCCGCAAAACTCCCGCGCCTCC...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTCAGGTGCTCTCCTGCTaGGTTAGGGATGCTCCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: NTAGPRFYLVGLNLDLMAQVLSC*VRDAPD Trigger: ATCTGGAGCATCCCTAACCAAGCAGGAGAGCACCTG...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS TCA 90 bp | TCAGTGATCTTGATCACTTTCTTCAGGCTTTTGCCACTTGTTGGCTaGGGGTCGATTTACTCCCTTAGCTGCGTCACTCTACTTTCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SVILITFFRLLPLVG*GSIYSLSCVTLLSP Trigger: TGGAGAAAGTAGAGTGACGCAGCTAAGGGAGTAAATCGACCCTCAGCCAACAAGTGGCAAAAGCCTGAAGAAAGTGATCAAGATCACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | CTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGGCTTTTGCCACTTGTaGGCTGAGGGTCGATTTACT | + |
|
Preference number: 5 (lower is better) Translates to: LNTAGPRFYLVGLNLDLMGFCHL*AEGRFT Trigger: AGTAAATCGACCCTCAGCCAACAAGTGGCAAAAGCC...CATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | GCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTATGAAATCAGGCTTTTGCCACTaGTTGGCTGAGGGTCGATTT | + |
|
Preference number: 5 (lower is better) Translates to: AGPRFYLVGLNLDLMAMKSGFCH*LAEGRF Trigger: AAATCGACCCTCAGCCAACAAGTGGCAAAAGCCTGA...TTTCATAGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | GGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGTAGGTGGGTCATCAGTGATCTaGATCACTTTCTTCAGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: GKGEQILNTAGPRFYLVGGSSVI*ITFFRL Trigger: AAGCCTGAAGAAAGTGATCAAGATCACTGATGACCC...ACCTACCAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS TCA 90 bp | TCCTGGGCCTTGCCCACACCATTTCAGCCTCATTTTCCTTTTGTGTaGAATGTTAATGATATCATGGTGTCTTCATTACATTGTTGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: SWALPTPFQPHFPFV*NVNDIMVSSLHCCR Trigger: CCTGCAACAATGTAATGAAGACACCATGATATCATTAACATTTCACACAAAAGGAAAATGAGGCTGAAATGGTGTGGGCAAGGCCCAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGGGTGTCTTCATTACATaGTTGCAGGAGATGAAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: SLGKGEQILNTAGPRFYLGVFIT*LQEMKQ Trigger: TTGCTTCATCTCCTGCAACAATGTAATGAAGACACC...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGTGTATTCCCTGTGCATaGTCTTCACATCCTTTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: SLGKGEQILNTAGPRFYLCIPCA*SSHPFS Trigger: AGAAAAAGGATGTGAAGACAATGCACAGGGAATACA...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS-3UTR CAA 90 bp | AGTTTGGGAAAAGGTGAGCAAATCCTTAACACAGCTGGCCCAAGGTTTTATTTGACAGATCTGAAACTATaGTATTCCCTGTGCATTGTC | + |
|
Preference number: 5 (lower is better) Translates to: SLGKGEQILNTAGPRFYLTDLKL*YSLCIV Trigger: GACAATGCACAGGGAATACAATAGTTTCAGATCTGT...CAAATAAAACCTTGGGCCAGCTGTGTTAAGGATTTGCTCACCTTTTCCCAAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CAA 90 bp | AACACAGCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTGTCTTCATTACATTGTaGCAGGAGATGAAGCAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: NTAGPRFYLVGLNLDLMAVFITL*QEMKQK Trigger: CTTTTGCTTCATCTCCTGCAACAATGTAATGAAGAC...AGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGCTGTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS-3UTR CAA 90 bp | GCTGGCCCAAGGTTTTATTTGGTAGGTCTAAATCTTGACCTTATGGCTATGAAAGATTGTAAATGTGTGTaGTCCTCCTTCTCATTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: AGPRFYLVGLNLDLMAMKDCKCV*SSFSLF Trigger: AAACAATGAGAAGGAGGACAACACACATTTACAATC...TTTCATAGCCATAAGGTCAAGATTTAGACCTACCAAATAAAACCTTGGGCCAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS CCA 72 bp | AGGCGGGAGTCGGCACTAGCTGCTGCCGCGGTGCTGTaGGTGCTGCGTACCAGCTGTTCACTGCTGTCTCGC | + |
|
Preference number: 6 (lower is better) Translates to: RRESALAAAAVL*VLRTSCSLLSR Trigger: GCGAGACAGCAGTGAACAGCTGGTACGCAGCACCCACAGCACCGCGGCAGCAGCTAGTGCCGACTCCCGCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000223129.8 ENST00000396682.6 |
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| CDS GCA 72 bp | TGCGGCTGGCGGGAAACCCACGGACGACTGAAACTGTaGGCCCCGCGGGTGTCTATGGGGCAGATTTCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: CGWRETHGRLKL*APRVSMGQISR Trigger: CCGAGAAATCTGCCCCATAGACACCCGCGGGGCGCACAGTTTCAGTCGTCCGTGGGTTTCCCGCCAGCCGCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000223129.8 ENST00000396682.6 ENST00000462723.1 |
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| CDS TCA 72 bp | GATTGGCTGCTTAGTGACGCGCGGCGTCCCGGAAGTTaGCAGATACAGGGCGAGAGGCAGTGGAGGCGGGAC | + |
|
Preference number: 6 (lower is better) Translates to: DWLLSDARRPGS*QIQGERQWRRD Trigger: GTCCCGCCTCCACTGCCTCTCGCCCTGTATCTGTCAACTTCCGGGACGCCGCGCGTCACTAAGCAGCCAATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS GCA 72 bp | CCGCGGTGCTGTGGGTGCTGCGTACCAGCTGTTCACTaGTGTCTCGCCTTCCCTCTTGCCAGTTCTGCGTGG | + |
|
Preference number: 6 (lower is better) Translates to: PRCCGCCVPAVH*CLAFPLASSAW Trigger: CCACGCAGAACTGGCAAGAGGGAAGGCGAGACAGCAGTGAACAGCTGGTACGCAGCACCCACAGCACCGCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS CAA 90 bp | AATCGCGCTGTCTCTTTCTGCGATCACAGGATTCCCGGCGGTGACTaGACCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTGGTGCGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: NRAVSFCDHRIPGGD*TPEVGCEAPVLVRR Trigger: CCGCCGCACCAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGAGACAGCGCGATT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396682.6 |
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| CDS CAA 90 bp | CGGTGGGATGAATCTTTCTGCGATCACAGGATTCCCGGCGGTGACTaGACCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTGGTGCGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: RWDESFCDHRIPGGD*TPEVGCEAPVLVRR Trigger: CCGCCGCACCAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGATTCATCCCACCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000406109.5 ENST00000463632.1 |
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| CDS CAA 90 bp | TCTCGCCTTCCCTCTTGCCAGTTCTGCGTGGGAGGCGCGGGAGTTTaGCGGAATGATACGTGGTGTGGCGTCGGGGTTGTGATACCCGCC | + |
|
Preference number: 6 (lower is better) Translates to: SRLPSCQFCVGGAGV*RNDTWCGVGVVIPA Trigger: GGCGGGTATCACAACCCCGACGCCACACCACGTATCATTCCGCAAAACTCCCGCGCCTCCCACGCAGAACTGGCAAGAGGGAAGGCGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS CAA 90 bp | AACCTGAGACTACCTTTCTGCGATCACAGGATTCCCGGCGGTGACTaGACCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTGGTGCGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: NLRLPFCDHRIPGGD*TPEVGCEAPVLVRR Trigger: CCGCCGCACCAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGGTAGTCTCAGGTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS TCA 72 bp | CCAGTTCTGCGTGGGAGGCGCGGGAGTTTTGCGGAATaGTACGTGGTGTGGCGTCGGGGTTGTGATACCCGC | + |
|
Preference number: 6 (lower is better) Translates to: PVLRGRRGSFAE*YVVWRRGCDTR Trigger: GCGGGTATCACAACCCCGACGCCACACCACGTATCATTCCGCAAAACTCCCGCGCCTCCCACGCAGAACTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS GCA 72 bp | CGTACCAGCTGTTCACTGCTGTCTCGCCTTCCCTCTTaGCAGTTCTGCGTGGGAGGCGCGGGAGTTTTGCGG | + |
|
Preference number: 6 (lower is better) Translates to: RTSCSLLSRLPS*QFCVGGAGVLR Trigger: CCGCAAAACTCCCGCGCCTCCCACGCAGAACTGGCAAGAGGGAAGGCGAGACAGCAGTGAACAGCTGGTACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS CAA 72 bp | CCCTCTTGCCAGTTCTGCGTGGGAGGCGCGGGAGTTTaGCGGAATGATACGTGGTGTGGCGTCGGGGTTGTG | + |
|
Preference number: 6 (lower is better) Translates to: PSCQFCVGGAGV*RNDTWCGVGVV Trigger: CACAACCCCGACGCCACACCACGTATCATTCCGCAAAACTCCCGCGCCTCCCACGCAGAACTGGCAAGAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS TCA 72 bp | TACCTTTCTGCGATCACAGGATTCCCGGCGGTGACTTaGCCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: YLSAITGFPAVT*PRKWGVKLRCW Trigger: CCAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS TCA 72 bp | TCTCTTTCTGCGATCACAGGATTCCCGGCGGTGACTTaGCCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: SLSAITGFPAVT*PRKWGVKLRCW Trigger: CCAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396682.6 |
||
| CDS CAA 72 bp | CTACCTTTCTGCGATCACAGGATTCCCGGCGGTGACTaGACCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: LPFCDHRIPGGD*TPEVGCEAPVL Trigger: CAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGGTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS CAA 72 bp | GTCTCTTTCTGCGATCACAGGATTCCCGGCGGTGACTaGACCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: VSFCDHRIPGGD*TPEVGCEAPVL Trigger: CAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGAGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396682.6 |
||
| CDS TCA 72 bp | AATCTTTCTGCGATCACAGGATTCCCGGCGGTGACTTaGCCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: NLSAITGFPAVT*PRKWGVKLRCW Trigger: CCAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000406109.5 ENST00000463632.1 |
||
| CDS GCA 72 bp | AGAAGGGGCTGGATGAGTCCGGAAGTGGAGATTGGCTaGTTAGTGACGCGCGGCGTCCCGGAAGTTGACAGA | + |
|
Preference number: 6 (lower is better) Translates to: RRGWMSPEVEIG*LVTRGVPEVDR Trigger: TCTGTCAACTTCCGGGACGCCGCGCGTCACTAAGCAGCCAATCTCCACTTCCGGACTCATCCAGCCCCTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS CCA 72 bp | GACAGATACAGGGCGAGAGGCAGTGGAGGCGGGACTTaGATAGGGGCGGAACCTGAGACTACCTTTCTGCGA | + |
|
Preference number: 6 (lower is better) Translates to: DRYRARGSGGGT*IGAEPETTFLR Trigger: TCGCAGAAAGGTAGTCTCAGGTTCCGCCCCTATCCAAGTCCCGCCTCCACTGCCTCTCGCCCTGTATCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS CAA 72 bp | GAATCTTTCTGCGATCACAGGATTCCCGGCGGTGACTaGACCCCGGAAGTGGGGTGTGAAGCTCCGGTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: ESFCDHRIPGGD*TPEVGCEAPVL Trigger: CAGCACCGGAGCTTCACACCCCACTTCCGGGGTCAAGTCACCGCCGGGAATCCTGTGATCGCAGAAAGATTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000406109.5 ENST00000463632.1 |
||
| CDS TCA 72 bp | GTCCCAGCTACTGGGGAGGCTGACATGGGAGCAACTTaGTCTTGGGAGGCTAAGGCTGCAGTGCGCCATGAT | + |
|
Preference number: 6 (lower is better) Translates to: VPATGEADMGAT*SWEAKAAVRHD Trigger: ATCATGGCGCACTGCAGCCTTAGCCTCCCAAGATCAAGTTGCTCCCATGTCAGCCTCCCCAGTAGCTGGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000462723.1 ENST00000463632.1 |
||
| CDS CCA 72 bp | GTGCTCTCCTGCTTGGTTAGGGATGCTCCAGATTCCTaGGCCTTGCCCACACCATTTCAGCCTCATTTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: VLSCLVRDAPDS*ALPTPFQPHFP Trigger: AGGAAAATGAGGCTGAAATGGTGTGGGCAAGGCCCAGGAATCTGGAGCATCCCTAACCAAGCAGGAGAGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000223129.8 |
||
| CDS GCA 72 bp | CCTGCTTGGTTAGGGATGCTCCAGATTCCTGGGCCTTaGCCACACCATTTCAGCCTCATTTTCCTTTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: PAWLGMLQIPGP*PHHFSLIFLLC Trigger: ACACAAAAGGAAAATGAGGCTGAAATGGTGTGGGCAAGGCCCAGGAATCTGGAGCATCCCTAACCAAGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS CAA 72 bp | TCCTGCTTGGTTAGGGATGCTCCAGATTCCTGGGCCTaGCCCACACCATTTCAGCCTCATTTTCCTTTTGTG | + |
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Preference number: 6 (lower is better) Translates to: SCLVRDAPDSWA*PTPFQPHFPFV Trigger: CACAAAAGGAAAATGAGGCTGAAATGGTGTGGGCAAGGCCCAGGAATCTGGAGCATCCCTAACCAAGCAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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| CDS TCA 72 bp | TTGATCACTTTCTTCAGGCTTTTGCCACTTGTTGGCTaGGGGTCGATTTACTCCCTTAGCTGCGTCACTCTA | + |
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Preference number: 6 (lower is better) Translates to: LITFFRLLPLVG*GSIYSLSCVTL Trigger: TAGAGTGACGCAGCTAAGGGAGTAAATCGACCCTCAGCCAACAAGTGGCAAAAGCCTGAAGAAAGTGATCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000223129.8 |
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