Pregenerated sensors for RP9 (Homo sapiens)
Ensembl gene IDs: ENSG00000164610Ensembl transcript IDs: ENST00000297157.8, ENST00000474370.2, ENST00000492391.2, ENST00000682645.1, ENST00000683432.1, ENST00000684207.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCGTCGTGTCGCCGCCGCTTCTGCTCCCGACGTCGCTGCAGCTCCTaGTCCGGCGGCTCACGCGGCCGCCGCGCGCCCGCAGCCCCCACG | + |
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Preference number: 5 (lower is better) Translates to: ASCRRRFCSRRRCSS*SGGSRGRRAPAAPT Trigger: CGTGGGGGCTGCGGGCGCGCGGCGGCCGCGTGAGCCGCCGGAGCAGGAGCTGCAGCGACGTCGGGAGCAGAAGCGGCGGCGACACGACGC 80% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000297157.8 ENST00000474370.2 ENST00000492391.2 ENST00000682645.1 ENST00000683432.1 ENST00000684207.1 |
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| CDS CCA 90 bp | GGACCCGGCCTAGCGCCCACCGCGGCGTCCCGCGCCCCGGGCCCCTaGCTTCAGAAGACTGGCCGCGCGCGGACGGCAGCTCGGGACTCA | + |
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Preference number: 5 (lower is better) Translates to: GPGLAPTAASRAPGP*LQKTGRARTAARDS Trigger: TGAGTCCCGAGCTGCCGTCCGCGCGCGGCCAGTCTTCTGAAGCCAGGGGCCCGGGGCGCGGGACGCCGCGGTGGGCGCTAGGCCGGGTCC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS TCA 90 bp | GTTGGCTCCCTGAACGCCCCGCCAGGAGGATGGACTTCAAGTCCTTaGCCGCGGCGCCCGACATCGGTCGCCCGCACCAGGCTCCTGCCG | + |
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Preference number: 5 (lower is better) Translates to: VGSLNAPPGGWTSSP*PRRPTSVARTRLLP Trigger: CGGCAGGAGCCTGGTGCGGGCGACCGATGTCGGGCGCCGCGGTCAAGGACTTGAAGTCCATCCTCCTGGCGGGGCGTTCAGGGAGCCAAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS TCA 90 bp | CTCCCAAGTCAGATTCTGCTTGGTGCCGAGCGGCAGTTGGCTCCCTaGACGCCCCGCCAGGAGGATGGACTTCAAGTCCTTGACCGCGGC | + |
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Preference number: 5 (lower is better) Translates to: LPSQILLGAERQLAP*TPRQEDGLQVLDRG Trigger: GCCGCGGTCAAGGACTTGAAGTCCATCCTCCTGGCGGGGCGTTCAGGGAGCCAACTGCCGCTCGGCACCAAGCAGAATCTGACTTGGGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS CCA 90 bp | TGGCTTAAGATGACAGCCCTCTTTCTTCTTCACATGGCACGGTGGTaGGGGGTGGGGTGGATGCTTCCTTATCTAGAAGATGGAGAACGT | + |
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Preference number: 5 (lower is better) Translates to: WLKMTALFLLHMARW*GVGWMLPYLEDGER Trigger: ACGTTCTCCATCTTCTAGATAAGGAAGCATCCACCCCACCCCCCACCACCGTGCCATGTGAAGAAGAAAGAGGGCTGTCATCTTAAGCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474370.2 ENST00000682645.1 |
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| CDS CCA 90 bp | GTAGAAGGTTGTTTAATGTGTGGAAAAGGTAAAACAGAGGGTCTCTaGCCAGGGAGACCAGGGAGACATCAGGTAGGTCTGAAGGAAGCT | + |
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Preference number: 5 (lower is better) Translates to: VEGCLMCGKGKTEGL*PGRPGRHQVGLKEA Trigger: AGCTTCCTTCAGACCTACCTGATGTCTCCCTGGTCTCCCTGGCCAGAGACCCTCTGTTTTACCTTTTCCACACATTAAACAACCTTCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000474370.2 ENST00000682645.1 |
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| CDS TCA 90 bp | AAATATAACCCACCCAAAGAAGAAAAACCGATAGATACTGAACTCTaGGGCACGTTGTCTTTGCTTTTAACAAATAATCAAGGCAATGAA | + |
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Preference number: 5 (lower is better) Translates to: KYNPPKEEKPIDTEL*GTLSLLLTNNQGNE Trigger: TTCATTGCCTTGATTATTTGTTAAAAGCAAAGACAACGTGCCTCAGAGTTCAGTATCTATCGGTTTTTCTTCTTTGGGTGGGTTATATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474370.2 ENST00000682645.1 |
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| CDS CCA 72 bp | CTAGCGCCCACCGCGGCGTCCCGCGCCCCGGGCCCCTaGCTTCAGAAGACTGGCCGCGCGCGGACGGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: LAPTAASRAPGP*LQKTGRARTAA Trigger: AGCTGCCGTCCGCGCGCGGCCAGTCTTCTGAAGCCAGGGGCCCGGGGCGCGGGACGCCGCGGTGGGCGCTAG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS CCA 72 bp | GGCGTCCCGCGCCCCGGGCCCCTGGCTTCAGAAGACTaGCCGCGCGCGGACGGCAGCTCGGGACTCACAAGG | + |
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Preference number: 6 (lower is better) Translates to: GVPRPGPLASED*PRADGSSGLTR Trigger: CCTTGTGAGTCCCGAGCTGCCGTCCGCGCGCGGCCAGTCTTCTGAAGCCAGGGGCCCGGGGCGCGGGACGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS CAA 90 bp | AGTTGGCTCCCTGAACGCCCCGCCAGGAGGATGGACTTCAAGTCCTaGACCGCGGCGCCCGACATCGGTCGCCCGCACCAGGCTCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: SWLPERPARRMDFKS*TAAPDIGRPHQAPA Trigger: GGCAGGAGCCTGGTGCGGGCGACCGATGTCGGGCGCCGCGGTCAAGGACTTGAAGTCCATCCTCCTGGCGGGGCGTTCAGGGAGCCAACT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS TCA 72 bp | CTGAACGCCCCGCCAGGAGGATGGACTTCAAGTCCTTaGCCGCGGCGCCCGACATCGGTCGCCCGCACCAGG | + |
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Preference number: 6 (lower is better) Translates to: LNAPPGGWTSSP*PRRPTSVARTR Trigger: CCTGGTGCGGGCGACCGATGTCGGGCGCCGCGGTCAAGGACTTGAAGTCCATCCTCCTGGCGGGGCGTTCAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS CAA 72 bp | CCTGAACGCCCCGCCAGGAGGATGGACTTCAAGTCCTaGACCGCGGCGCCCGACATCGGTCGCCCGCACCAG | + |
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Preference number: 6 (lower is better) Translates to: PERPARRMDFKS*TAAPDIGRPHQ Trigger: CTGGTGCGGGCGACCGATGTCGGGCGCCGCGGTCAAGGACTTGAAGTCCATCCTCCTGGCGGGGCGTTCAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS CCA 72 bp | TCCCAAGTCAGATTCTGCTTGGTGCCGAGCGGCAGTTaGCTCCCTGAACGCCCCGCCAGGAGGATGGACTTC | + |
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Preference number: 6 (lower is better) Translates to: SQVRFCLVPSGS*LPERPARRMDF Trigger: GAAGTCCATCCTCCTGGCGGGGCGTTCAGGGAGCCAACTGCCGCTCGGCACCAAGCAGAATCTGACTTGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS TCA 72 bp | CAGATTCTGCTTGGTGCCGAGCGGCAGTTGGCTCCCTaGACGCCCCGCCAGGAGGATGGACTTCAAGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: QILLGAERQLAP*TPRQEDGLQVL Trigger: AAGGACTTGAAGTCCATCCTCCTGGCGGGGCGTTCAGGGAGCCAACTGCCGCTCGGCACCAAGCAGAATCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000683432.1 |
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| CDS CCA 72 bp | ATGACAGCCCTCTTTCTTCTTCACATGGCACGGTGGTaGGGGGTGGGGTGGATGCTTCCTTATCTAGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: MTALFLLHMARW*GVGWMLPYLED Trigger: ATCTTCTAGATAAGGAAGCATCCACCCCACCCCCCACCACCGTGCCATGTGAAGAAGAAAGAGGGCTGTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474370.2 ENST00000682645.1 |
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| CDS CCA 72 bp | GTAGGTTGGAAATCTGAGATCAGGGTCCCAGCAAGGTaGGTTTGTGGTGAGAGCTTTCTTCCTGGCTTAAGA | + |
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Preference number: 6 (lower is better) Translates to: VGWKSEIRVPAR*VCGESFLPGLR Trigger: TCTTAAGCCAGGAAGAAAGCTCTCACCACAAACCCACCTTGCTGGGACCCTGATCTCAGATTTCCAACCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000474370.2 ENST00000682645.1 |
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| CDS CCA 72 bp | TGTTTAATGTGTGGAAAAGGTAAAACAGAGGGTCTCTaGCCAGGGAGACCAGGGAGACATCAGGTAGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: CLMCGKGKTEGL*PGRPGRHQVGL Trigger: CAGACCTACCTGATGTCTCCCTGGTCTCCCTGGCCAGAGACCCTCTGTTTTACCTTTTCCACACATTAAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000474370.2 ENST00000682645.1 |
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| CDS TCA 72 bp | GCTGCTGCAATAGCCACAAAGGGTCACACGAATGAATaGAAAGCAGATGGACACATTTCCAGACTCCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: AAAIATKGHTNE*KADGHISRLPP Trigger: TGGAGGGAGTCTGGAAATGTGTCCATCTGCTTTTCATTCATTCGTGTGACCCTTTGTGGCTATTGCAGCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000474370.2 ENST00000682645.1 |
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| CDS CCA 72 bp | AATATGATAATAAAGAAGACTCAAGACACAGGAAAATaGGTGATCCAACACGGGAGAGAGGCTAAGGGGACC | + |
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Preference number: 6 (lower is better) Translates to: NMIIKKTQDTGK*VIQHGREAKGT Trigger: GGTCCCCTTAGCCTCTCTCCCGTGTTGGATCACCCATTTTCCTGTGTCTTGAGTCTTCTTTATTATCATATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000474370.2 ENST00000682645.1 |
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