Pregenerated sensors for ROMO1 (Homo sapiens)
Ensembl gene IDs: ENSG00000125995Ensembl transcript IDs: ENST00000336695.4, ENST00000374072.5, ENST00000374077.8, ENST00000374078.5, ENST00000397416.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATGGGCTGGGATTGATGGGAAGGGACAGATGTAGTTGGCAACCATaGTTAGCATCGGATGCCCATCCCAATGGCCATGAATGTGCCAAA | + |
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Preference number: 1 (lower is better) Translates to: HGLGLMGRDRCSWQP*LASDAHPNGHECAK Trigger: TTTGGCACATTCATGGCCATTGGGATGGGCATCCGATGCTAACCATGGTTGCCAACTACATCTGTCCCTTCCCATCAATCCCAGCCCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374072.5 |
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| 3UTR CCA 72 bp | GGATTGATGGGAAGGGACAGATGTAGTTGGCAACCATaGTTAGCATCGGATGCCCATCCCAATGGCCATGAA | + |
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Preference number: 3 (lower is better) Translates to: GLMGRDRCSWQP*LASDAHPNGHE Trigger: TTCATGGCCATTGGGATGGGCATCCGATGCTAACCATGGTTGCCAACTACATCTGTCCCTTCCCATCAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374072.5 |
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| CDS CCA 90 bp | CGTAGGGACCCACGGCCACCGGCATCTGCGGGGGATAGGAAAGTGTaGGCCCAGGCGCTGGCCCAAGAGTCGGGCGGGGACGGAAGCGGT | + |
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Preference number: 5 (lower is better) Translates to: RRDPRPPASAGDRKV*AQALAQESGGDGSG Trigger: ACCGCTTCCGTCCCCGCCCGACTCTTGGGCCAGCGCCTGGGCCCACACTTTCCTATCCCCCGCAGATGCCGGTGGCCGTGGGTCCCTACG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000336695.4 |
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| CDS CCA 90 bp | CCCGATGAATCGCTTCCGGAGCGCCGGGCAGCACTTCCGGGAGCCTaGGGCCCAGGACTGCAGCGGCTTCGGAAGGTGGGCTCTGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: PDESLPERRAALPGA*GPGLQRLRKVGSAS Trigger: GCTGGCAGAGCCCACCTTCCGAAGCCGCTGCAGTCCTGGGCCCCAGGCTCCCGGAAGTGCTGCCCGGCGCTCCGGAAGCGATTCATCGGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374078.5 |
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| CDS TCA 90 bp | CTACGTCTCTCACGGAAAACGACGGGGAGGGCGCTCGCGGCCCGATaGATCGCTTCCGGAGCGCCGGGCAGCACTTCCGGGAGCCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: LRLSRKTTGRALAAR*IASGAPGSTSGSLG Trigger: CCCCAGGCTCCCGGAAGTGCTGCCCGGCGCTCCGGAAGCGATTCATCGGGCCGCGAGCGCCCTCCCCGTCGTTTTCCGTGAGAGACGTAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000374078.5 |
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| CDS CCA 90 bp | GGCCACCGGCATCTGCGGGGGATAGGAAAGTGTGGGCCCAGGCGCTaGCCCAAGAGTCGGGCGGGGACGGAAGCGGTAGGCTGGGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: GHRHLRGIGKCGPRR*PKSRAGTEAVGWEV Trigger: CACTTCCCAGCCTACCGCTTCCGTCCCCGCCCGACTCTTGGGCCAGCGCCTGGGCCCACACTTTCCTATCCCCCGCAGATGCCGGTGGCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000336695.4 |
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| CDS CCA 72 bp | TCGCTTCCGGAGCGCCGGGCAGCACTTCCGGGAGCCTaGGGCCCAGGACTGCAGCGGCTTCGGAAGGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SLPERRAALPGA*GPGLQRLRKVG Trigger: GCCCACCTTCCGAAGCCGCTGCAGTCCTGGGCCCCAGGCTCCCGGAAGTGCTGCCCGGCGCTCCGGAAGCGA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374078.5 |
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| CDS CCA 72 bp | CCACGGCCACCGGCATCTGCGGGGGATAGGAAAGTGTaGGCCCAGGCGCTGGCCCAAGAGTCGGGCGGGGAC | + |
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Preference number: 6 (lower is better) Translates to: PRPPASAGDRKV*AQALAQESGGD Trigger: GTCCCCGCCCGACTCTTGGGCCAGCGCCTGGGCCCACACTTTCCTATCCCCCGCAGATGCCGGTGGCCGTGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000336695.4 |
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| CDS TCA 72 bp | TCACGGAAAACGACGGGGAGGGCGCTCGCGGCCCGATaGATCGCTTCCGGAGCGCCGGGCAGCACTTCCGGG | + |
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Preference number: 6 (lower is better) Translates to: SRKTTGRALAAR*IASGAPGSTSG Trigger: CCCGGAAGTGCTGCCCGGCGCTCCGGAAGCGATTCATCGGGCCGCGAGCGCCCTCCCCGTCGTTTTCCGTGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000374078.5 |
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| CDS CCA 72 bp | CATCTGCGGGGGATAGGAAAGTGTGGGCCCAGGCGCTaGCCCAAGAGTCGGGCGGGGACGGAAGCGGTAGGC | + |
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Preference number: 6 (lower is better) Translates to: HLRGIGKCGPRR*PKSRAGTEAVG Trigger: GCCTACCGCTTCCGTCCCCGCCCGACTCTTGGGCCAGCGCCTGGGCCCACACTTTCCTATCCCCCGCAGATG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000336695.4 |
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| CDS CAA 72 bp | GCCATGCCCACGGCGCAACCCATCACGAAGCCCATTTaGACACGGTCGAAGCAGCTTGGCTGGGACTGTCCG | + |
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Preference number: 6 (lower is better) Translates to: AMPTAQPITKPI*TRSKQLGWDCP Trigger: CGGACAGTCCCAGCCAAGCTGCTTCGACCGTGTCAAAATGGGCTTCGTGATGGGTTGCGCCGTGGGCATGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000336695.4 ENST00000374072.5 ENST00000374077.8 ENST00000374078.5 ENST00000397416.1 |
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| CDS TCA 72 bp | CCATGCCCACGGCGCAACCCATCACGAAGCCCATTTTaGCACGGTCGAAGCAGCTTGGCTGGGACTGTCCGT | + |
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Preference number: 6 (lower is better) Translates to: PCPRRNPSRSPF*HGRSSLAGTVR Trigger: ACGGACAGTCCCAGCCAAGCTGCTTCGACCGTGTCAAAATGGGCTTCGTGATGGGTTGCGCCGTGGGCATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000336695.4 ENST00000374072.5 ENST00000374077.8 ENST00000374078.5 ENST00000397416.1 |
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