RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNPS1 (Homo sapiens)

Ensembl gene IDs: ENSG00000205937

Ensembl transcript IDs: ENST00000562205.1, ENST00000563857.1, ENST00000565243.2, ENST00000565870.5, ENST00000566458.5, ENST00000566783.1

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GCCACCTCCTCCTGCTTTCCTCAGCCGCCGAGGCCGGCGCCGCTCTaGCGTCAGAGTCAAGGAGCGGGAAGTCGCCGCCGCCCGGCGCGC +
Preference number: 5 (lower is better)
Translates to: ATSSCFPQPPRPAPL*RQSQGAGSRRRPAR
Trigger: GCGCGCCGGGCGGCGGCGACTTCCCGCTCCTTGACTCTGACGTCAGAGCGGCGCCGGCCTCGGCGGCTGAGGAAAGCAGGAGGAGGTGGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS TCA 90 bp CGGGCTGGTTGCACGCTTACTGGAGCGGGCACATGGGTAGCCTGTTaGACCTGGGAGGGCAGCGCGATGACCGAGGCTCGTCCTCCGGCG +
Preference number: 5 (lower is better)
Translates to: RAGCTLTGAGTWVAC*TWEGSAMTEARPPA
Trigger: CGCCGGAGGACGAGCCTCGGTCATCGCGCTGCCCTCCCAGGTTCAACAGGCTACCCATGTGCCCGCTCCAGTAAGCGTGCAACCAGCCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS CCA 90 bp CATCGAGAGCGAGTGACAGGCAAACAGAAGGCCCCAGGGCCAGGGTaGGGCTTCCTCGCAGGACCATGCAGGCAGTATCCGCGTTTGCGC +
Preference number: 5 (lower is better)
Translates to: HRERVTGKQKAPGPG*GFLAGPCRQYPRLR
Trigger: GCGCAAACGCGGATACTGCCTGCATGGTCCTGCGAGGAAGCCCCACCCTGGCCCTGGGGCCTTCTGTTTGCCTGTCACTCGCTCTCGATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000562205.1
ENST00000565243.2
CDS GCA 90 bp CAGGGTGGGGCTTCCTCGCAGGACCATGCAGGCAGTATCCGCGTTTaGGCTTCCTTCTCCTCCAACCAAGGGAAGCTGGGTCTGGGGCTA +
Preference number: 5 (lower is better)
Translates to: QGGASSQDHAGSIRV*ASFSSNQGKLGLGL
Trigger: TAGCCCCAGACCCAGCTTCCCTTGGTTGGAGGAGAAGGAAGCGCAAACGCGGATACTGCCTGCATGGTCCTGCGAGGAAGCCCCACCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000562205.1
ENST00000565243.2
CDS GCA 90 bp AAACAGAAGGCCCCAGGGCCAGGGTGGGGCTTCCTCGCAGGACCATaGAGGCAGTATCCGCGTTTGCGCTTCCTTCTCCTCCAACCAAGG +
Preference number: 5 (lower is better)
Translates to: KQKAPGPGWGFLAGP*RQYPRLRFLLLQPR
Trigger: CCTTGGTTGGAGGAGAAGGAAGCGCAAACGCGGATACTGCCTGCATGGTCCTGCGAGGAAGCCCCACCCTGGCCCTGGGGCCTTCTGTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000562205.1
ENST00000565243.2
CDS CCA 90 bp TGTCCACACAGTCAGGAACACATAGGGACAGTCCCCATGTGCTCCTaGAGGCGTCTCTACCCCGCAGAGGAGGCACAGGTACAACTGTCG +
Preference number: 5 (lower is better)
Translates to: CPHSQEHIGTVPMCS*RRLYPAEEAQVQLS
Trigger: CGACAGTTGTACCTGTGCCTCCTCTGCGGGGTAGAGACGCCTCCAGGAGCACATGGGGACTGTCCCTATGTGTTCCTGACTGTGTGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565870.5
CDS TCA 90 bp AAGGGCTATGCTGGGCCCTGTGCTGGGAAGGACCCAAAGCACTGGTaGGAGAAGGTAGCATCGAGAGCGAGTGACAGGCAAACAGAAGGC +
Preference number: 5 (lower is better)
Translates to: KGYAGPCAGKDPKHW*EKVASRASDRQTEG
Trigger: GCCTTCTGTTTGCCTGTCACTCGCTCTCGATGCTACCTTCTCTCACCAGTGCTTTGGGTCCTTCCCAGCACAGGGCCCAGCATAGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000562205.1
ENST00000565243.2
CDS CCA 90 bp CCAATGGGCGCCAGCGAGGAAGCGTTAAAGAGTCAAGGCAGTTTGTaGGAGTCGCGCTGGGGACGTTCAAGGTGTCTCCTAGCCGGTAAA +
Preference number: 5 (lower is better)
Translates to: PMGASEEALKSQGSL*ESRWGRSRCLLAGK
Trigger: TTTACCGGCTAGGAGACACCTTGAACGTCCCCAGCGCGACTCCCACAAACTGCCTTGACTCTTTAACGCTTCCTCGCTGGCGCCCATTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS CCA 90 bp TGGAATCTGCTAGGTGGAAGAGAAGGGCTATGCTGGGCCCTGTGCTaGGAAGGACCCAAAGCACTGGTGAGAGAAGGTAGCATCGAGAGC +
Preference number: 5 (lower is better)
Translates to: WNLLGGREGLCWALC*EGPKALVREGSIES
Trigger: GCTCTCGATGCTACCTTCTCTCACCAGTGCTTTGGGTCCTTCCCAGCACAGGGCCCAGCATAGCCCTTCTCTTCCACCTAGCAGATTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000562205.1
ENST00000565243.2
CDS CCA 90 bp GATGGGATGGGGGTGGTGAGGTGTGAACTTCCACTGACGGAGAGGTaGGGCTGCGGTGGGAAGCTGCATGAAGGAAATTTTAGGAGATGC +
Preference number: 5 (lower is better)
Translates to: DGMGVVRCELPLTER*GCGGKLHEGNFRRC
Trigger: GCATCTCCTAAAATTTCCTTCATGCAGCTTCCCACCGCAGCCCCACCTCTCCGTCAGTGGAAGTTCACACCTCACCACCCCCATCCCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS CCA 90 bp AGCGAGGAAGCGTTAAAGAGTCAAGGCAGTTTGTGGGAGTCGCGCTaGGGACGTTCAAGGTGTCTCCTAGCCGGTAAAGTCCCTGGGACT +
Preference number: 5 (lower is better)
Translates to: SEEALKSQGSLWESR*GRSRCLLAGKVPGT
Trigger: AGTCCCAGGGACTTTACCGGCTAGGAGACACCTTGAACGTCCCCAGCGCGACTCCCACAAACTGCCTTGACTCTTTAACGCTTCCTCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS GCA 90 bp GCAGCAGGGAGTGGAGCAGAGATGACTCCACATGCCTCAAAATGCTaGACTGAGGACAAAATGCCACCCGAAACTATTCACAAGGGTCCA +
Preference number: 5 (lower is better)
Translates to: AAGSGAEMTPHASKC*TEDKMPPETIHKGP
Trigger: TGGACCCTTGTGAATAGTTTCGGGTGGCATTTTGTCCTCAGTGCAGCATTTTGAGGCATGTGGAGTCATCTCTGCTCCACTCCCTGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS GCA 90 bp GGTCTGGGGCTAAGAGAAGTGGGAGAAGTTCTCTTAGGAGGGCTCTaGAGCACTGAGAGGGGCCTGAATCAACATCAAATGATTTGGCAG +
Preference number: 5 (lower is better)
Translates to: GLGLREVGEVLLGGL*STERGLNQHQMIWQ
Trigger: CTGCCAAATCATTTGATGTTGATTCAGGCCCCTCTCAGTGCTGCAGAGCCCTCCTAAGAGAACTTCTCCCACTTCTCTTAGCCCCAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS CCA 90 bp TGGAATGTCTGTAATCACGCCCACCCAGAAGGTACCCGGGTCCCCTaGGTTTTTAGCTCAGCAAGCACTCAGACTGTCAAACAGCAGATA +
Preference number: 5 (lower is better)
Translates to: WNVCNHAHPEGTRVP*VFSSASTQTVKQQI
Trigger: TATCTGCTGTTTGACAGTCTGAGTGCTTGCTGAGCTAAAAACCCAGGGGACCCGGGTACCTTCTGGGTGGGCGTGATTACAGACATTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS TCA 90 bp AGGGAGTGGAGCAGAGATGACTCCACATGCCTCAAAATGCTGCACTaGGGACAAAATGCCACCCGAAACTATTCACAAGGGTCCATGTGC +
Preference number: 5 (lower is better)
Translates to: REWSRDDSTCLKMLH*GQNATRNYSQGSMC
Trigger: GCACATGGACCCTTGTGAATAGTTTCGGGTGGCATTTTGTCCTCAGTGCAGCATTTTGAGGCATGTGGAGTCATCTCTGCTCCACTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS TCA 90 bp GCTAAGAGAAGTGGGAGAAGTTCTCTTAGGAGGGCTCTGCAGCACTaGGAGGGGCCTGAATCAACATCAAATGATTTGGCAGGGAAACGG +
Preference number: 5 (lower is better)
Translates to: AKRSGRSSLRRALQH*EGPESTSNDLAGKR
Trigger: CCGTTTCCCTGCCAAATCATTTGATGTTGATTCAGGCCCCTCTCAGTGCTGCAGAGCCCTCCTAAGAGAACTTCTCCCACTTCTCTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS GCA 90 bp ACAGCAGCAGGGAGTGGAGCAGAGATGACTCCACATGCCTCAAAATaGTGCACTGAGGACAAAATGCCACCCGAAACTATTCACAAGGGT +
Preference number: 5 (lower is better)
Translates to: TAAGSGAEMTPHASK*CTEDKMPPETIHKG
Trigger: ACCCTTGTGAATAGTTTCGGGTGGCATTTTGTCCTCAGTGCAGCATTTTGAGGCATGTGGAGTCATCTCTGCTCCACTCCCTGCTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS GCA 90 bp AAGGGTTTAAAGAGTGAACGAATTGGCAAGGCAACAAGTCTACTTTaGAGTCAAAAGCTGAGCACACAAAAAGGCAGCAAGGGAGCACGG +
Preference number: 5 (lower is better)
Translates to: KGLKSERIGKATSLL*SQKLSTQKGSKGAR
Trigger: CCGTGCTCCCTTGCTGCCTTTTTGTGTGCTCAGCTTTTGACTGCAAAGTAGACTTGTTGCCTTGCCAATTCGTTCACTCTTTAAACCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000563857.1
ENST00000565870.5
CDS CCA 90 bp AGCACCACATTCACATGCAGAACAGAGAAAAACCTAACTCAAGGGTaGTCTCCAGATAGGATTAGATCTCCTGTTTTATTGCAATTTCCC +
Preference number: 5 (lower is better)
Translates to: STTFTCRTEKNLTQG*SPDRIRSPVLLQFP
Trigger: GGGAAATTGCAATAAAACAGGAGATCTAATCCTATCTGGAGACCACCCTTGAGTTAGGTTTTTCTCTGTTCTGCATGTGAATGTGGTGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000565870.5
CDS TCA 90 bp TACGCCAAAGAGCAGCCTAATAACAAGATAAAAGGGTTTAAAGAGTaGACGAATTGGCAAGGCAACAAGTCTACTTTGCAGTCAAAAGCT +
Preference number: 5 (lower is better)
Translates to: YAKEQPNNKIKGFKE*TNWQGNKSTLQSKA
Trigger: AGCTTTTGACTGCAAAGTAGACTTGTTGCCTTGCCAATTCGTTCACTCTTTAAACCCTTTTATCTTGTTATTAGGCTGCTCTTTGGCGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000563857.1
ENST00000565870.5
CDS CCA 90 bp TTTTCTCAACTACCTTTAAGGCACATGGGGACTAACTCCGGCATGTaGCTATGTATTCAGAACATACTTAAGAGGTTTAACTTCAGTAAA +
Preference number: 5 (lower is better)
Translates to: FSQLPLRHMGTNSGM*LCIQNILKRFNFSK
Trigger: TTTACTGAAGTTAAACCTCTTAAGTATGTTCTGAATACATAGCCACATGCCGGAGTTAGTCCCCATGTGCCTTAAAGGTAGTTGAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS TCA 72 bp TCCTGCTTTCCTCAGCCGCCGAGGCCGGCGCCGCTCTaGCGTCAGAGTCAAGGAGCGGGAAGTCGCCGCCGC +
Preference number: 6 (lower is better)
Translates to: SCFPQPPRPAPL*RQSQGAGSRRR
Trigger: GCGGCGGCGACTTCCCGCTCCTTGACTCTGACGTCAGAGCGGCGCCGGCCTCGGCGGCTGAGGAAAGCAGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS CCA 72 bp CGCCGCCGCCCGGCGCGCAGCGATGACGTAAACGCCTaGCCCAATGGGCGCCAGCGAGGAAGCGTTAAAGAG +
Preference number: 6 (lower is better)
Translates to: RRRPARSDDVNA*PNGRQRGSVKE
Trigger: CTCTTTAACGCTTCCTCGCTGGCGCCCATTGGGCCAGGCGTTTACGTCATCGCTGCGCGCCGGGCGGCGGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS GCA 72 bp GCCCCAGGGCCAGGGTGGGGCTTCCTCGCAGGACCATaGAGGCAGTATCCGCGTTTGCGCTTCCTTCTCCTC +
Preference number: 6 (lower is better)
Translates to: APGPGWGFLAGP*RQYPRLRFLLL
Trigger: GAGGAGAAGGAAGCGCAAACGCGGATACTGCCTGCATGGTCCTGCGAGGAAGCCCCACCCTGGCCCTGGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000562205.1
ENST00000565243.2
CDS CAA 90 bp CCAGGGTGGGGCTTCCTCGCAGGACCATGCAGGCAGTATCCGCGTTaGCGCTTCCTTCTCCTCCAACCAAGGGAAGCTGGGTCTGGGGCT +
Preference number: 6 (lower is better)
Translates to: PGWGFLAGPCRQYPR*RFLLLQPREAGSGA
Trigger: AGCCCCAGACCCAGCTTCCCTTGGTTGGAGGAGAAGGAAGCGCAAACGCGGATACTGCCTGCATGGTCCTGCGAGGAAGCCCCACCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000562205.1
ENST00000565243.2
CDS GCA 72 bp CTAGCCGGTAAAGTCCCTGGGACTGACCGGGCTGGTTaGACGCTTACTGGAGCGGGCACATGGGTAGCCTGT +
Preference number: 6 (lower is better)
Translates to: LAGKVPGTDRAG*TLTGAGTWVAC
Trigger: ACAGGCTACCCATGTGCCCGCTCCAGTAAGCGTGCAACCAGCCCGGTCAGTCCCAGGGACTTTACCGGCTAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS CAA 90 bp GGCCCAATGGGCGCCAGCGAGGAAGCGTTAAAGAGTCAAGGCAGTTaGTGGGAGTCGCGCTGGGGACGTTCAAGGTGTCTCCTAGCCGGT +
Preference number: 6 (lower is better)
Translates to: GPMGASEEALKSQGS*WESRWGRSRCLLAG
Trigger: ACCGGCTAGGAGACACCTTGAACGTCCCCAGCGCGACTCCCACAAACTGCCTTGACTCTTTAACGCTTCCTCGCTGGCGCCCATTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS CCA 72 bp GAGCATGCACCCCGACCTCAAGAATTGTCTGGTAGCTaGGGATACTGGGAGCCCAAGCGCAGCCCCTTCTGT +
Preference number: 6 (lower is better)
Translates to: EHAPRPQELSGS*GYWEPKRSPFC
Trigger: ACAGAAGGGGCTGCGCTTGGGCTCCCAGTATCCCCAGCTACCAGACAATTCTTGAGGTCGGGGTGCATGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS CCA 72 bp AGTCAGGAACACATAGGGACAGTCCCCATGTGCTCCTaGAGGCGTCTCTACCCCGCAGAGGAGGCACAGGTA +
Preference number: 6 (lower is better)
Translates to: SQEHIGTVPMCS*RRLYPAEEAQV
Trigger: TACCTGTGCCTCCTCTGCGGGGTAGAGACGCCTCCAGGAGCACATGGGGACTGTCCCTATGTGTTCCTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565870.5
CDS CAA 72 bp GGCGCCAGCGAGGAAGCGTTAAAGAGTCAAGGCAGTTaGTGGGAGTCGCGCTGGGGACGTTCAAGGTGTCTC +
Preference number: 6 (lower is better)
Translates to: GASEEALKSQGS*WESRWGRSRCL
Trigger: GAGACACCTTGAACGTCCCCAGCGCGACTCCCACAAACTGCCTTGACTCTTTAACGCTTCCTCGCTGGCGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS CCA 72 bp CTCAGTGCCAGCGGCCTCAGTCACAGCAGCAGGGAGTaGAGCAGAGATGACTCCACATGCCTCAAAATGCTG +
Preference number: 6 (lower is better)
Translates to: LSASGLSHSSRE*SRDDSTCLKML
Trigger: CAGCATTTTGAGGCATGTGGAGTCATCTCTGCTCCACTCCCTGCTGCTGTGACTGAGGCCGCTGGCACTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS TCA 72 bp CGGCCTCAGTCACAGCAGCAGGGAGTGGAGCAGAGATaGCTCCACATGCCTCAAAATGCTGCACTGAGGACA +
Preference number: 6 (lower is better)
Translates to: RPQSQQQGVEQR*LHMPQNAALRT
Trigger: TGTCCTCAGTGCAGCATTTTGAGGCATGTGGAGTCATCTCTGCTCCACTCCCTGCTGCTGTGACTGAGGCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS GCA 72 bp ATGTGCTGGAATCTGCTAGGTGGAAGAGAAGGGCTATaGTGGGCCCTGTGCTGGGAAGGACCCAAAGCACTG +
Preference number: 6 (lower is better)
Translates to: MCWNLLGGREGL*WALCWEGPKAL
Trigger: CAGTGCTTTGGGTCCTTCCCAGCACAGGGCCCAGCATAGCCCTTCTCTTCCACCTAGCAGATTCCAGCACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000562205.1
ENST00000565243.2
CDS CCA 72 bp GCCAGCGAGGAAGCGTTAAAGAGTCAAGGCAGTTTGTaGGAGTCGCGCTGGGGACGTTCAAGGTGTCTCCTA +
Preference number: 6 (lower is better)
Translates to: ASEEALKSQGSL*ESRWGRSRCLL
Trigger: TAGGAGACACCTTGAACGTCCCCAGCGCGACTCCCACAAACTGCCTTGACTCTTTAACGCTTCCTCGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS CCA 72 bp GCGTTAAAGAGTCAAGGCAGTTTGTGGGAGTCGCGCTaGGGACGTTCAAGGTGTCTCCTAGCCGGTAAAGTC +
Preference number: 6 (lower is better)
Translates to: ALKSQGSLWESR*GRSRCLLAGKV
Trigger: GACTTTACCGGCTAGGAGACACCTTGAACGTCCCCAGCGCGACTCCCACAAACTGCCTTGACTCTTTAACGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566458.5
CDS CCA 72 bp TGTAATCACGCCCACCCAGAAGGTACCCGGGTCCCCTaGGTTTTTAGCTCAGCAAGCACTCAGACTGTCAAA +
Preference number: 6 (lower is better)
Translates to: CNHAHPEGTRVP*VFSSASTQTVK
Trigger: TTTGACAGTCTGAGTGCTTGCTGAGCTAAAAACCCAGGGGACCCGGGTACCTTCTGGGTGGGCGTGATTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS CCA 72 bp AGCACTGAGAGGGGCCTGAATCAACATCAAATGATTTaGCAGGGAAACGGAAGGATTCAGGGGACAGCTGGG +
Preference number: 6 (lower is better)
Translates to: STERGLNQHQMI*QGNGRIQGTAG
Trigger: CCCAGCTGTCCCCTGAATCCTTCCGTTTCCCTGCCAAATCATTTGATGTTGATTCAGGCCCCTCTCAGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS TCA 72 bp AGTGGGAGAAGTTCTCTTAGGAGGGCTCTGCAGCACTaGGAGGGGCCTGAATCAACATCAAATGATTTGGCA +
Preference number: 6 (lower is better)
Translates to: SGRSSLRRALQH*EGPESTSNDLA
Trigger: TGCCAAATCATTTGATGTTGATTCAGGCCCCTCTCAGTGCTGCAGAGCCCTCCTAAGAGAACTTCTCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS GCA 72 bp CTAAGAGAAGTGGGAGAAGTTCTCTTAGGAGGGCTCTaGAGCACTGAGAGGGGCCTGAATCAACATCAAATG +
Preference number: 6 (lower is better)
Translates to: LREVGEVLLGGL*STERGLNQHQM
Trigger: CATTTGATGTTGATTCAGGCCCCTCTCAGTGCTGCAGAGCCCTCCTAAGAGAACTTCTCCCACTTCTCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000562205.1
ENST00000565243.2
CDS GCA 72 bp GGGAGTGGAGCAGAGATGACTCCACATGCCTCAAAATaGTGCACTGAGGACAAAATGCCACCCGAAACTATT +
Preference number: 6 (lower is better)
Translates to: GSGAEMTPHASK*CTEDKMPPETI
Trigger: AATAGTTTCGGGTGGCATTTTGTCCTCAGTGCAGCATTTTGAGGCATGTGGAGTCATCTCTGCTCCACTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS TCA 72 bp AGCAGAGATGACTCCACATGCCTCAAAATGCTGCACTaGGGACAAAATGCCACCCGAAACTATTCACAAGGG +
Preference number: 6 (lower is better)
Translates to: SRDDSTCLKMLH*GQNATRNYSQG
Trigger: CCCTTGTGAATAGTTTCGGGTGGCATTTTGTCCTCAGTGCAGCATTTTGAGGCATGTGGAGTCATCTCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS GCA 72 bp CTCCACATGCCTCAAAATGCTGCACTGAGGACAAAATaGCACCCGAAACTATTCACAAGGGTCCATGTGCTT +
Preference number: 6 (lower is better)
Translates to: LHMPQNAALRTK*HPKLFTRVHVL
Trigger: AAGCACATGGACCCTTGTGAATAGTTTCGGGTGGCATTTTGTCCTCAGTGCAGCATTTTGAGGCATGTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS GCA 72 bp AGTGGAGCAGAGATGACTCCACATGCCTCAAAATGCTaGACTGAGGACAAAATGCCACCCGAAACTATTCAC +
Preference number: 6 (lower is better)
Translates to: SGAEMTPHASKC*TEDKMPPETIH
Trigger: GTGAATAGTTTCGGGTGGCATTTTGTCCTCAGTGCAGCATTTTGAGGCATGTGGAGTCATCTCTGCTCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS CAA 90 bp TCTGCCTTCAGTATTTCTAGTAAGGCTCTGCACAAGCTGCAGGAGTaGTTAAGTGAAGATCTCAGGAATGGAGTCTCAGCTACTTCTGTC +
Preference number: 6 (lower is better)
Translates to: SAFSISSKALHKLQE*LSEDLRNGVSATSV
Trigger: GACAGAAGTAGCTGAGACTCCATTCCTGAGATCTTCACTTAACAACTCCTGCAGCTTGTGCAGAGCCTTACTAGAAATACTGAAGGCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566783.1
CDS CCA 72 bp CTACCTTTAAGGCACATGGGGACTAACTCCGGCATGTaGCTATGTATTCAGAACATACTTAAGAGGTTTAAC +
Preference number: 6 (lower is better)
Translates to: LPLRHMGTNSGM*LCIQNILKRFN
Trigger: GTTAAACCTCTTAAGTATGTTCTGAATACATAGCCACATGCCGGAGTTAGTCCCCATGTGCCTTAAAGGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000565243.2
CDS GCA 72 bp TGCCTGCCATGTAAGAGTTTAGCAAAATGCCTGGACTaGAGAATGTGCTCAAATAACGGTAACAAATTACTC +
Preference number: 6 (lower is better)
Translates to: CLPCKSLAKCLD*RMCSNNGNKLL
Trigger: GAGTAATTTGTTACCGTTATTTGAGCACATTCTGCAGTCCAGGCATTTTGCTAAACTCTTACATGGCAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566783.1
CDS TCA 72 bp GAGCAGCCTAATAACAAGATAAAAGGGTTTAAAGAGTaGACGAATTGGCAAGGCAACAAGTCTACTTTGCAG +
Preference number: 6 (lower is better)
Translates to: EQPNNKIKGFKE*TNWQGNKSTLQ
Trigger: CTGCAAAGTAGACTTGTTGCCTTGCCAATTCGTTCACTCTTTAAACCCTTTTATCTTGTTATTAGGCTGCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563857.1
ENST00000565870.5
CDS TCA 72 bp ACTTATCCTTTCTCAAGTTTCTCATCATCAATATGGTaGCAATTACAGTTCCAACCTTATAGTTACCCAGGG +
Preference number: 6 (lower is better)
Translates to: TYPFSSFSSSIW*QLQFQPYSYPG
Trigger: CCCTGGGTAACTATAAGGTTGGAACTGTAATTGTCACCATATTGATGATGAGAAACTTGAGAAAGGATAAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566783.1