Pregenerated sensors for RNFT1-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000267302

Ensembl transcript IDs: ENST00000586209.1, ENST00000593015.5

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CGGGTTCTGACAAGGCCTGATCCTCACAGCCCAAATTCACGATTGTaGGGAAAGGTCAGCTCAGACCAAACGTCACCGCCCAGACAGACA	+
Preference number: 5 (lower is better) Translates to: RVLTRPDPHSPNSRL*GKVSSDQTSPPRQT Trigger: TGTCTGTCTGGGCGGTGACGTTTGGTCTGAGCTGACCTTTCCTCACAATCGTGAATTTGGGCTGTGAGGATCAGGCCTTGTCAGAACCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000593015.5
CDS GCA 90 bp	TCTGGCAGCTGTCAGCATTCCTTGGCTTGTGGCCATATATCTCTCTaGTCCATCTTCACATGGCTTTCTTTTCTGTGTCTCTATTGCCTC	+
Preference number: 5 (lower is better) Translates to: SGSCQHSLACGHISL*SIFTWLSFLCLYCL Trigger: GAGGCAATAGAGACACAGAAAAGAAAGCCATGTGAAGATGGAGCAGAGAGATATATGGCCACAAGCCAAGGAATGCTGACAGCTGCCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000593015.5
CDS CCA 90 bp	TCTGTGTCTCTATTGCCTCTTTTGCCTCTCTCTTATAAGGACACTTaGGATGGTATTCAGGACCCACACATATCTCCTCGGAAAATTCAC	+
Preference number: 5 (lower is better) Translates to: SVSLLPLLPLSYKDT*DGIQDPHISPRKIH Trigger: GTGAATTTTCCGAGGAGATATGTGTGGGTCCTGAATACCATCCCAAGTGTCCTTATAAGAGAGAGGCAAAAGAGGCAATAGAGACACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000593015.5
CDS TCA 72 bp	CTGAACCAGAAATCTCTCTCCTCTCATCTCGGGTTCTaGCAAGGCCTGATCCTCACAGCCCAAATTCACGAT	+
Preference number: 6 (lower is better) Translates to: LNQKSLSSHLGF*QGLILTAQIHD Trigger: ATCGTGAATTTGGGCTGTGAGGATCAGGCCTTGTCAGAACCCGAGATGAGAGGAGAGAGATTTCTGGTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000586209.1 ENST00000593015.5
CDS TCA 72 bp	ATTCACTATAGTCTGGAGCCTGGCTCTCACCCTTACTaGACCAGAAATCTCTCTCCTCTCATCTCGGGTTCT	+
Preference number: 6 (lower is better) Translates to: IHYSLEPGSHPY*TRNLSPLISGS Trigger: AGAACCCGAGATGAGAGGAGAGAGATTTCTGGTTCAGTAAGGGTGAGAGCCAGGCTCCAGACTATAGTGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000586209.1 ENST00000593015.5
CDS TCA 72 bp	CTTCTTGAGGACCTCCGAACAATTTTCCACCTCGGCTaGACCATTTTACATTCCCACCAACAACATACGAGG	+
Preference number: 6 (lower is better) Translates to: LLEDLRTIFHLG*TILHSHQQHTR Trigger: CCTCGTATGTTGTTGGTGGGAATGTAAAATGGTTCAGCCGAGGTGGAAAATTGTTCGGAGGTCCTCAAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000586209.1
CDS GCA 72 bp	TGTCAGCATTCCTTGGCTTGTGGCCATATATCTCTCTaGTCCATCTTCACATGGCTTTCTTTTCTGTGTCTC	+
Preference number: 6 (lower is better) Translates to: CQHSLACGHISL*SIFTWLSFLCL Trigger: GAGACACAGAAAAGAAAGCCATGTGAAGATGGAGCAGAGAGATATATGGCCACAAGCCAAGGAATGCTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000593015.5
CDS CAA 72 bp	CACATGGCTTTCTTTTCTGTGTCTCTATTGCCTCTTTaGCCTCTCTCTTATAAGGACACTTGGGATGGTATT	+
Preference number: 6 (lower is better) Translates to: HMAFFSVSLLPL*PLSYKDTWDGI Trigger: AATACCATCCCAAGTGTCCTTATAAGAGAGAGGCAAAAGAGGCAATAGAGACACAGAAAAGAAAGCCATGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000593015.5
CDS GCA 72 bp	GCATTTAGACATTATTTCCGTGGTGTTAAAAGAACTTaGAGATTTAGCGTCAGAGTCACTGTAGGTCATACA	+
Preference number: 6 (lower is better) Translates to: AFRHYFRGVKRT*RFSVRVTVGHT Trigger: TGTATGACCTACAGTGACTCTGACGCTAAATCTGCAAGTTCTTTTAACACCACGGAAATAATGTCTAAATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586209.1

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