Pregenerated sensors for RNF7 (Homo sapiens)
Ensembl gene IDs: ENSG00000114125Ensembl transcript IDs: ENST00000273480.4, ENST00000477012.5, ENST00000477393.1, ENST00000498828.1
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTAATCATCGCAGGCTGAGCAGCATCAGCGCTGCTTTGTCACAGTaGCTCCTCTTCCCTCAGATGCTGGTGTGTGGCATAAACAGGGCT | + |
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Preference number: 1 (lower is better) Translates to: CNHRRLSSISAALSQ*LLFPQMLVCGINRA Trigger: AGCCCTGTTTATGCCACACACCAGCATCTGAGGGAAGAGGAGGCACTGTGACAAAGCAGCGCTGATGCTGCTCAGCCTGCGATGATTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR CCA 90 bp | AAGGCTGGTGAGAAGCCAGTGAGACAGAGGGGACAGCGAGGGCTGTaGAGCCAGATCTACAGTCAAATCCCATTTCACTGGCATTTATTA | + |
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Preference number: 1 (lower is better) Translates to: KAGEKPVRQRGQRGL*SQIYSQIPFHWHLL Trigger: TAATAAATGCCAGTGAAATGGGATTTGACTGTAGATCTGGCTCCACAGCCCTCGCTGTCCCCTCTGTCTCACTGGCTTCTCACCAGCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| 3UTR CCA 90 bp | CTTCCCTCAGATGCTGGTGTGTGGCATAAACAGGGCTTTGTTAGGTaGCGGGACTGTGGTTTTGCTGTGTGGAAAATCAAATTGTTACCA | + |
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Preference number: 1 (lower is better) Translates to: LPSDAGVWHKQGFVR*RDCGFAVWKIKLLP Trigger: TGGTAACAATTTGATTTTCCACACAGCAAAACCACAGTCCCGCCACCTAACAAAGCCCTGTTTATGCCACACACCAGCATCTGAGGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR CCA 90 bp | CATAAACAGGGCTTTGTTAGGTGGCGGGACTGTGGTTTTGCTGTGTaGAAAATCAAATTGTTACCACCATCCTCCACATTTCATTTATAT | + |
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Preference number: 1 (lower is better) Translates to: HKQGFVRWRDCGFAV*KIKLLPPSSTFHLY Trigger: ATATAAATGAAATGTGGAGGATGGTGGTAACAATTTGATTTTCCACACAGCAAAACCACAGTCCCGCCACCTAACAAAGCCCTGTTTATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR TCA 90 bp | TCCTCCACATTTCATTTATATACTGTCACACTGCCTAAAGTAACCTaGCATTCTACTGCTTTCCTCTTCAATGCAAAGCCATGTATCTGG | + |
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Preference number: 1 (lower is better) Translates to: SSTFHLYTVTLPKVT*HSTAFLFNAKPCIW Trigger: CCAGATACATGGCTTTGCATTGAAGAGGAAAGCAGTAGAATGTCAGGTTACTTTAGGCAGTGTGACAGTATATAAATGAAATGTGGAGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR TCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAGTAATCATCGCAGGCTaGGCAGCATCAGCGCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVVIIAG*AASALL Trigger: AAGCAGCGCTGATGCTGCTCAGCCTGCGATGATTAC...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR GCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAGAGCAGCATCAGCGCTaGTTTGTCACAGTGCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVEQHQR*FVTVPP Trigger: AGGAGGCACTGTGACAAAGCAGCGCTGATGCTGCTC...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR CAA 90 bp | GTGTGTGGCATAAACAGGGCTTTGTTAGGTGGCGGGACTGTGGTTTaGCTGTGTGGAAAATCAAATTGTTACCACCATCCTCCACATTTC | + |
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Preference number: 2 (lower is better) Translates to: VCGINRALLGGGTVV*LCGKSNCYHHPPHF Trigger: GAAATGTGGAGGATGGTGGTAACAATTTGATTTTCCACACAGCAAAACCACAGTCCCGCCACCTAACAAAGCCCTGTTTATGCCACACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR GCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAAGTGAGTTGACATCATaGCACTGCACTCCAGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVSELTS*HCTPAW Trigger: CCAGGCTGGAGTGCAGTGGCATGATGTCAACTCACT...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR TCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAAGATCCACCAGGGCTCTaGACAACTGCGCTAAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: KSLYHIKISWTVPSPCQKDPPGL*TTALRS Trigger: GCTTCTTAGCGCAGTTGTTCAGAGCCCTGGTGGATC...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR TCA 90 bp | AGAAGCCTTCCTTTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGGATCCACCAGGGCTCTaGACAACTGCGCTAAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: RSLPLATHKKQLFTFYPKDPPGL*TTALRS Trigger: GCTTCTTAGCGCAGTTGTTCAGAGCCCTGGTGGATC...CTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAAAGGAAGGCTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| 3UTR-3UTR TCA 90 bp | CCTTTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGGATCCACCAGGGCTCTaGACAACTGCGCTAAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: PLATHKKQLFTFYPKTLEDPPGL*TTALRS Trigger: GCTTCTTAGCGCAGTTGTTCAGAGCCCTGGTGGATC...CTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAAAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| 3UTR-3UTR CCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTACACATAAAGATTTCATaGACCGTTCCCTCTCCCTGC | + |
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Preference number: 2 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVHIKIS*TVPSPC Trigger: GCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTG...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR TCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAATGCAAAAAGTTCTCTaGAACTGCTTCCACTGCCTG | + |
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Preference number: 2 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVMQKVL*NCFHCL Trigger: CAGGCAGTGGAAGCAGTTTCAGAGAACTTTTTGCAT...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR TCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAAACCTCCCCTCAGTGTaGATCAGTTTGATAAAGTTG | + |
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Preference number: 2 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVNLPSV*ISLIKL Trigger: CAACTTTATCAAACTGATTCACACTGAGGGGAGGTT...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR GCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTATTCAGAATGGCACACTaGATCTGCAGATGTGAAAAG | + |
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Preference number: 2 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVFRMAH*ICRCEK Trigger: CTTTTCACATCTGCAGATGCAGTGTGCCATTCTGAA...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR CAA 90 bp | TTTGTTAGGTGGCGGGACTGTGGTTTTGCTGTGTGGAAAATCAAATaGTTACCACCATCCTCCACATTTCATTTATATACTGTCACACTG | + |
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Preference number: 2 (lower is better) Translates to: FVRWRDCGFAVWKIK*LPPSSTFHLYTVTL Trigger: CAGTGTGACAGTATATAAATGAAATGTGGAGGATGGTGGTAACAATTTGATTTTCCACACAGCAAAACCACAGTCCCGCCACCTAACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR GCA 72 bp | CGCAGGCTGAGCAGCATCAGCGCTGCTTTGTCACAGTaGCTCCTCTTCCCTCAGATGCTGGTGTGTGGCATA | + |
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Preference number: 3 (lower is better) Translates to: RRLSSISAALSQ*LLFPQMLVCGI Trigger: TATGCCACACACCAGCATCTGAGGGAAGAGGAGGCACTGTGACAAAGCAGCGCTGATGCTGCTCAGCCTGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR CCA 72 bp | GAGAAGCCAGTGAGACAGAGGGGACAGCGAGGGCTGTaGAGCCAGATCTACAGTCAAATCCCATTTCACTGG | + |
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Preference number: 3 (lower is better) Translates to: EKPVRQRGQRGL*SQIYSQIPFHW Trigger: CCAGTGAAATGGGATTTGACTGTAGATCTGGCTCCACAGCCCTCGCTGTCCCCTCTGTCTCACTGGCTTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| 3UTR-3UTR CAA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAAGCATCAGCGCTGCTTaGTCACAGTGCCTCCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVSISAA*SQCLLF Trigger: GAAGAGGAGGCACTGTGACAAAGCAGCGCTGATGCT...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR CAA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTATCCATCGGCTCCTATTaGAAGAATTCATCCCCTGTA | + |
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Preference number: 3 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVSIGSY*KNSSPV Trigger: TACAGGGGATGAATTCTTCAAATAGGAGCCGATGGA...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| 3UTR-3UTR CAA 90 bp | CCTTTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGTATGCTTCCAATAGGTaGCTACCGATGGTCATCCAG | + |
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Preference number: 3 (lower is better) Translates to: PLATHKKQLFTFYPKTLEYASNR*LPMVIQ Trigger: CTGGATGACCATCGGTAGCAACCTATTGGAAGCATA...CTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAAAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| 3UTR-3UTR CAA 90 bp | CCTTTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGTCCATCGGCTCCTATTaGAAGAATTCATCCCCTGTA | + |
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Preference number: 3 (lower is better) Translates to: PLATHKKQLFTFYPKTLESIGSY*KNSSPV Trigger: TACAGGGGATGAATTCTTCAAATAGGAGCCGATGGA...CTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAAAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| 3UTR-3UTR CAA 90 bp | CCTTTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGCATCTAAGACAGGCATaGACACAGAAGCCTTCCTTT | + |
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Preference number: 3 (lower is better) Translates to: PLATHKKQLFTFYPKTLEHLRQA*TQKPSF Trigger: AAAGGAAGGCTTCTGTGTCAATGCCTGTCTTAGATG...CTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAAAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| 3UTR CAA 72 bp | TTCCCTCAGATGCTGGTGTGTGGCATAAACAGGGCTTaGTTAGGTGGCGGGACTGTGGTTTTGCTGTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: FPQMLVCGINRA*LGGGTVVLLCG Trigger: TCCACACAGCAAAACCACAGTCCCGCCACCTAACAAAGCCCTGTTTATGCCACACACCAGCATCTGAGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CCA 90 bp | AGGGCTGTGGAGCCAGATCTACAGTCAAATCCCATTTCACTGGCATTTATTAGGTCTGGACCCTGCAGATaGCGCACGTATCGCACTCCA | + |
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Preference number: 4 (lower is better) Translates to: RAVEPDLQSNPISLAFIRSGPCR*RTYRTP Trigger: TGGAGTGCGATACGTGCGCCATCTGCAGGGTCCAGA...CCTAATAAATGCCAGTGAAATGGGATTTGACTGTAGATCTGGCTCCACAGCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| CDS-3UTR CCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAACCTGGACCCTGCAGATaGCGCACGTATCGCACTCCA | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKPGPCR*RTYRTP Trigger: TGGAGTGCGATACGTGCGCCATCTGCAGGGTCCAGG...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CCA 90 bp | AGGGCTGTGGAGCCAGATCTACAGTCAAATCCCATTTCACTGGCATTTATTAGGATAGGTTGCTACCGATaGTCATCCAGACAAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RAVEPDLQSNPISLAFIRIGCYR*SSRQGW Trigger: CCAGCCTTGTCTGGATGACCATCGGTAGCAACCTAT...CCTAATAAATGCCAGTGAAATGGGATTTGACTGTAGATCTGGCTCCACAGCCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| CDS-3UTR TCA 90 bp | AATAAACTGCTTTGTATGCTTCCAATAGGTTGCTACCGATGGTCATCCAGACAAGATCCACCAGGGCTCTaGACAACTGCGCTAAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: NKLLCMLPIGCYRWSSRQDPPGL*TTALRS Trigger: GCTTCTTAGCGCAGTTGTTCAGAGCCCTGGTGGATC...TTGTCTGGATGACCATCGGTAGCAACCTATTGGAAGCATACAAAGCAGTTTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| CDS-3UTR TCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAAGATGGCTGTGCAGATaGGCTGTAATCATCGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVRWLCR*AVIIAG Trigger: GCCTGCGATGATTACAGCTCATCTGCACAGCCATCT...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR TCA 90 bp | ACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTTCCTCTCTGGTGAGAAGCCAGTaGGACAGAGGGGACAGCGAG | + |
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Preference number: 4 (lower is better) Translates to: THKKQLFTFYPKTLESSSLVRSQ*DRGDSE Trigger: CTCGCTGTCCCCTCTGTCTCACTGGCTTCTCACCAG...AGAGGAACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS-3UTR TCA 90 bp | AATAAACTGCTTTGTATGCTTCCAATAGGTTGCTACCGATGGTCATCCAGACAATCCAGACAAGGCTGGTaGGAAGCCAGTGAGACAGAG | + |
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Preference number: 4 (lower is better) Translates to: NKLLCMLPIGCYRWSSRQSRQGW*EASETE Trigger: CTCTGTCTCACTGGCTTCTCACCAGCCTTGTCTGGA...TTGTCTGGATGACCATCGGTAGCAACCTATTGGAAGCATACAAAGCAGTTTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| CDS-3UTR GCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAGCTGCTTTGTCACAGTaGCTCCTCTTCCCTCAGATG | + |
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Preference number: 4 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVAALSQ*LLFPQM Trigger: CATCTGAGGGAAGAGGAGGCACTGTGACAAAGCAGC...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR TCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAAGTAATCATCGCAGGCTaGGCAGCATCAGCGCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKVIIAG*AASALL Trigger: AAGCAGCGCTGATGCTGCTCAGCCTGCGATGATTAC...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR TCA 90 bp | TTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTCTGGTGAGAAGCCAGTaGGACAGAGGGGACAGCGAG | + |
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Preference number: 4 (lower is better) Translates to: LATHKKQLFTFYPKTLESLVRSQ*DRGDSE Trigger: CTCGCTGTCCCCTCTGTCTCACTGGCTTCTCACCAG...ACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS-3UTR CCA 90 bp | TTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTCCTGGACCCTGCAGATaGCGCACGTATCGCACTCCA | + |
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Preference number: 4 (lower is better) Translates to: LATHKKQLFTFYPKTLESPGPCR*RTYRTP Trigger: TGGAGTGCGATACGTGCGCCATCTGCAGGGTCCAGG...ACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000477012.5 |
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| CDS-3UTR TCA 90 bp | ACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTTCCTCTGATCCACCAGGGCTCTaGACAACTGCGCTAAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: THKKQLFTFYPKTLESSSDPPGL*TTALRS Trigger: GCTTCTTAGCGCAGTTGTTCAGAGCCCTGGTGGATC...AGAGGAACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS-3UTR TCA 90 bp | ACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTTCCTCTTCCAGACAAGGCTGGTaGGAAGCCAGTGAGACAGAG | + |
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Preference number: 4 (lower is better) Translates to: THKKQLFTFYPKTLESSSSRQGW*EASETE Trigger: CTCTGTCTCACTGGCTTCTCACCAGCCTTGTCTGGA...AGAGGAACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS-3UTR GCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAAAGTGAGTTGACATCATaGCACTGCACTCCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKSELTS*HCTPAW Trigger: CCAGGCTGGAGTGCAGTGGCATGATGTCAACTCACT...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAACAGGGCTTTGTTAGGTaGCGGGACTGTGGTTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKQGFVR*RDCGFA Trigger: AGCAAAACCACAGTCCCGCCACCTAACAAAGCCCTG...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CCA 90 bp | TTGTATGCTTCCAATAGGTTGCTACCGATGGTCATCCAGACAAGGCTGGTGAGACAAATCCCATTTCACTaGCATTTATTAGGTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: LYASNRLLPMVIQTRLVRQIPFH*HLLGSG Trigger: CCCTGAACCTAATAAATGCCAGTGAAATGGGATTTG...TCTCACCAGCCTTGTCTGGATGACCATCGGTAGCAACCTATTGGAAGCATACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| 3UTR CAA 72 bp | ATAAACAGGGCTTTGTTAGGTGGCGGGACTGTGGTTTaGCTGTGTGGAAAATCAAATTGTTACCACCATCCT | + |
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Preference number: 4 (lower is better) Translates to: INRALLGGGTVV*LCGKSNCYHHP Trigger: AGGATGGTGGTAACAATTTGATTTTCCACACAGCAAAACCACAGTCCCGCCACCTAACAAAGCCCTGTTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR GCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAACCGTTCCCTCTCCCTaGCAAAAATACGTATTAGGA | + |
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Preference number: 4 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVTVPSP*QKYVLG Trigger: TCCTAATACGTATTTTTGGCAGGGAGAGGGAACGGT...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTATCAGATGCTGGTGTGTaGCATAAACAGGGCTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVSDAGV*HKQGFV Trigger: AACAAAGCCCTGTTTATGCCACACACCAGCATCTGA...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAACACATAAAGATTTCATaGACCGTTCCCTCTCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKHIKIS*TVPSPC Trigger: GCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTG...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR TCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAAATGCAAAAAGTTCTCTaGAACTGCTTCCACTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKMQKVL*NCFHCL Trigger: CAGGCAGTGGAAGCAGTTTCAGAGAACTTTTTGCAT...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 41% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR TCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAATCAATGATTGAACAGTaGGGTGAGTGCAGATCTAGG | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKSMIEQ*GECRSR Trigger: CCTAGATCTGCACTCACCTCACTGTTCAATCATTGA...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR TCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAACTGCCTAAAGTAACCTaGCATTCTACTGCTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKLPKVT*HSTAFL Trigger: GAGGAAAGCAGTAGAATGTCAGGTTACTTTAGGCAG...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR GCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAATGGCACACTGCATCTaGAGATGTGAAAAGTTAAGA | + |
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Preference number: 4 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVMAHCI*RCEKLR Trigger: TCTTAACTTTTCACATCTGCAGATGCAGTGTGCCAT...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR GCA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTATGCTTTCCTCTTCAATaGAAAGCCATGTATCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVCFPLQ*KAMYLV Trigger: AACCAGATACATGGCTTTGCATTGAAGAGGAAAGCA...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CCA 90 bp | TTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTATAGGTTGCTACCGATaGTCATCCAGACAAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LATHKKQLFTFYPKTLESIGCYR*SSRQGW Trigger: CCAGCCTTGTCTGGATGACCATCGGTAGCAACCTAT...ACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS-3UTR TCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAATCCTTTACCACTCAATaGTTGAACAGTGAGGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKSFTTQ*LNSEVS Trigger: ACTCACCTCACTGTTCAATCATTGAGTGGTAAAGGA...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR TCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAAAACCTCCCCTCAGTGTaGATCAGTTTGATAAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKNLPSV*ISLIKL Trigger: CAACTTTATCAAACTGATTCACACTGAGGGGAGGTT...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 40% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR GCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAATTCAGAATGGCACACTaGATCTGCAGATGTGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKFRMAH*ICRCEK Trigger: CTTTTCACATCTGCAGATGCAGTGTGCCATTCTGAA...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR GCA 90 bp | AGAAGCCTTCCTTTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGATGCTTCCAATAGGTTaGTACCGATGGTCATCCAGA | + |
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Preference number: 4 (lower is better) Translates to: RSLPLATHKKQLFTFYPKMLPIG*YRWSSR Trigger: TCTGGATGACCATCGGTAGCAACCTATTGGAAGCAT...CTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAAAGGAAGGCTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS-3UTR TCA 90 bp | TTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTATGCAAAAAGTTCTCTaGAACTGCTTCCACTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LATHKKQLFTFYPKTLESMQKVL*NCFHCL Trigger: CAGGCAGTGGAAGCAGTTTCAGAGAACTTTTTGCAT...ACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000477012.5 |
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| CDS-3UTR TCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAACTGCATCTGCAGATGTaGAAAGTTAAGATTCTAAGG | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKLHLQM*KVKILR Trigger: CCTTAGAATCTTAACTTTTCACATCTGCAGATGCAG...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR TCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAACCACATCCCTTAGATTaGAAAATTCAGAATGGCACA | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKPHPLD*KIQNGT Trigger: TGTGCCATTCTGAATTTTTCAATCTAAGGGATGTGG...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR GCA 90 bp | TTAGCAACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTATGCTTCCAATAGGTTaGTACCGATGGTCATCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: LATHKKQLFTFYPKTLESMLPIG*YRWSSR Trigger: TCTGGATGACCATCGGTAGCAACCTATTGGAAGCAT...ACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGTTGCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS-3UTR GCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAAAACCTGACATTCTACTaGTTTCCTCTTCAATGCAAA | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKNLTFY*FPLQCK Trigger: TTTGCATTGAAGAGGAAAGCAGTAGAATGTCAGGTT...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 38% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CCA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAAATTTACCCTGTTCACTaGCCCAAACTTAAAATCCTT | + |
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Preference number: 4 (lower is better) Translates to: KSLYHIKISWTVPSPCQKIYPVH*PKLKIL Trigger: AAGGATTTTAAGTTTGGGCCAGTGAACAGGGTAAAT...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CCA 90 bp | ACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTTCCTCTCAAATCCCATTTCACTaGCATTTATTAGGTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: THKKQLFTFYPKTLESSSQIPFH*HLLGSG Trigger: CCCTGAACCTAATAAATGCCAGTGAAATGGGATTTG...AGAGGAACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS-3UTR CAA 90 bp | AGAGGGGACAGCGAGGGCTGTGGAGCCAGATCTACAGTCAAATCCCATTTCACTTATGCTTCCAATAGGTaGCTACCGATGGTCATCCAG | + |
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Preference number: 5 (lower is better) Translates to: RGDSEGCGARSTVKSHFTYASNR*LPMVIQ Trigger: CTGGATGACCATCGGTAGCAACCTATTGGAAGCATA...AGTGAAATGGGATTTGACTGTAGATCTGGCTCCACAGCCCTCGCTGTCCCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| CDS-3UTR CAA 90 bp | AGAGGGGACAGCGAGGGCTGTGGAGCCAGATCTACAGTCAAATCCCATTTCACTCATCTAAGACAGGCATaGACACAGAAGCCTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: RGDSEGCGARSTVKSHFTHLRQA*TQKPSF Trigger: AAAGGAAGGCTTCTGTGTCAATGCCTGTCTTAGATG...AGTGAAATGGGATTTGACTGTAGATCTGGCTCCACAGCCCTCGCTGTCCCCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| CDS-3UTR CAA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAAGGCATAAACAGGGCTTaGTTAGGTGGCGGGACTGTG | + |
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Preference number: 5 (lower is better) Translates to: KSLYHIKISWTVPSPCQKGINRA*LGGGTV Trigger: CACAGTCCCGCCACCTAACAAAGCCCTGTTTATGCC...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CAA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTATATTGGAACCCAAAATaGTCCCGGCATGTTCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVYWNPK*SRHVPS Trigger: AGAGGGAACATGCCGGGACAATTTTGGGTTCCAATA...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CAA 90 bp | AATAAACTGCTTTGTATGCTTCCAATAGGTTGCTACCGATGGTCATCCAGACAATCCATCGGCTCCTATTaGAAGAATTCATCCCCTGTA | + |
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Preference number: 5 (lower is better) Translates to: NKLLCMLPIGCYRWSSRQSIGSY*KNSSPV Trigger: TACAGGGGATGAATTCTTCAAATAGGAGCCGATGGA...TTGTCTGGATGACCATCGGTAGCAACCTATTGGAAGCATACAAAGCAGTTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477393.1 |
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| CDS-3UTR CAA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTAGTGTGGAAAATCAAATaGTTACCACCATCCTCCACA | + |
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Preference number: 5 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVVWKIK*LPPSST Trigger: TGTGGAGGATGGTGGTAACAATTTGATTTTCCACAC...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CAA 90 bp | AAATCCTTATATCACATAAAGATTTCATGGACCGTTCCCTCTCCCTGCCAAAAAGGCGGGACTGTGGTTTaGCTGTGTGGAAAATCAAAT | + |
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Preference number: 5 (lower is better) Translates to: KSLYHIKISWTVPSPCQKGGTVV*LCGKSN Trigger: ATTTGATTTTCCACACAGCAAAACCACAGTCCCGCC...TTTTTGGCAGGGAGAGGGAACGGTCCATGAAATCTTTATGTGATATAAGGATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CAA 90 bp | CTTTTGTATTGGAACCCAAAATTGTCCCGGCATGTTCCCTCTGATGAGTATGTACTTGTGGTCCATTATTaGTTACAAAATAACCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: LLYWNPKLSRHVPSDEYVLVVHY*LQNNLP Trigger: GGGGAGGTTATTTTGTAACAAATAATGGACCACAAG...TACATACTCATCAGAGGGAACATGCCGGGACAATTTTGGGTTCCAATACAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000273480.4 |
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| CDS-3UTR CAA 90 bp | ACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTTCCTCTTATGCTTCCAATAGGTaGCTACCGATGGTCATCCAG | + |
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Preference number: 5 (lower is better) Translates to: THKKQLFTFYPKTLESSSYASNR*LPMVIQ Trigger: CTGGATGACCATCGGTAGCAACCTATTGGAAGCATA...AGAGGAACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS-3UTR CAA 90 bp | ACTCATAAGAAGCAACTTTTTACTTTCTACCCTAAGACACTTGAGAGTTCCTCTCATCTAAGACAGGCATaGACACAGAAGCCTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: THKKQLFTFYPKTLESSSHLRQA*TQKPSF Trigger: AAAGGAAGGCTTCTGTGTCAATGCCTGTCTTAGATG...AGAGGAACTCTCAAGTGTCTTAGGGTAGAAAGTAAAAAGTTGCTTCTTATGAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000477012.5 ENST00000477393.1 |
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| CDS CCA 72 bp | CTGTGGAGCCAGATCTACAGTCAAATCCCATTTCACTaGCATTTATTAGGTTCAGGGCCTCGGACCAATTAC | + |
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Preference number: 6 (lower is better) Translates to: LWSQIYSQIPFH*HLLGSGPRTNY Trigger: GTAATTGGTCCGAGGCCCTGAACCTAATAAATGCCAGTGAAATGGGATTTGACTGTAGATCTGGCTCCACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000477012.5 ENST00000477393.1 ENST00000498828.1 |
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