Pregenerated sensors for RNF6 (Homo sapiens)
Ensembl gene IDs: ENSG00000127870Ensembl transcript IDs: ENST00000346166.7, ENST00000381570.7, ENST00000381588.9, ENST00000468480.5, ENST00000474280.1, ENST00000476347.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCTCCTGTCCGGAGAACGTGTGCTGTGGGCGGCCGTTCTCTCGGGTaGTGGAGGCTGTGGTTGGGAGGCGGGATAGGCTTGCCGCCGCGC | + |
|
Preference number: 5 (lower is better) Translates to: PPVRRTCAVGGRSLG*WRLWLGGGIGLPPR Trigger: GCGCGGCGGCAAGCCTATCCCGCCTCCCAACCACAGCCTCCAGCACCCGAGAGAACGGCCGCCCACAGCACACGTTCTCCGGACAGGAGG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS CCA 90 bp | CCTGTCCGGAGAACGTGTGCTGTGGGCGGCCGTTCTCTCGGGTGCTaGAGGCTGTGGTTGGGAGGCGGGATAGGCTTGCCGCCGCGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: PVRRTCAVGGRSLGC*RLWLGGGIGLPPRL Trigger: GAGGCGCGGCGGCAAGCCTATCCCGCCTCCCAACCACAGCCTCCAGCACCCGAGAGAACGGCCGCCCACAGCACACGTTCTCCGGACAGG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS CCA 90 bp | GTGGTGGGACCCAGATCTTTCCCTCGAGCCCACCTCTCCAGGTCTTaGGCCTTCGCCCTCCTGTCCGGAGAACGTGTGCTGTGGGCGGCC | + |
|
Preference number: 5 (lower is better) Translates to: VVGPRSFPRAHLSRS*AFALLSGERVLWAA Trigger: GGCCGCCCACAGCACACGTTCTCCGGACAGGAGGGCGAAGGCCCAAGACCTGGAGAGGTGGGCTCGAGGGAAAGATCTGGGTCCCACCAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000474280.1 |
||
| CDS GCA 90 bp | GCTGTGCCCTCGAATTGGCCACTGAGGAGAGAAGCCGGAAGCCCGTaGTGCAGCGTGGGGTCGTCCAGCTGGAGGGGATACTCGGGAGGA | + |
|
Preference number: 5 (lower is better) Translates to: AVPSNWPLRREAGSP*CSVGSSSWRGYSGG Trigger: TCCTCCCGAGTATCCCCTCCAGCTGGACGACCCCACGCTGCAGCACGGGCTTCCGGCTTCTCTCCTCAGTGGCCAATTCGAGGGCACAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS GCA 90 bp | ATCTCTCCAGGTCTTGGGCCTTCGCCCTCCTGTCCGGAGAACGTGTaGTGTGGGCGGCCGTTCTCTCGGGTGCTGGAGGCTGTGGTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: ISPGLGPSPSCPENV*CGRPFSRVLEAVVG Trigger: CCCAACCACAGCCTCCAGCACCCGAGAGAACGGCCGCCCACAGCACACGTTCTCCGGACAGGAGGGCGAAGGCCCAAGACCTGGAGAGAT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS GCA 90 bp | GTGCCCTCGAATTGGCCACTGAGGAGAGAAGCCGGAAGCCCGTGCTaGAGCGTGGGGTCGTCCAGCTGGAGGGGATACTCGGGAGGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: VPSNWPLRREAGSPC*SVGSSSWRGYSGGR Trigger: TCTTCCTCCCGAGTATCCCCTCCAGCTGGACGACCCCACGCTGCAGCACGGGCTTCCGGCTTCTCTCCTCAGTGGCCAATTCGAGGGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS GCA 90 bp | GCAGTTAACCAATCGGAGAAGAGATGGGTGGCTCGAAGGATGGCCTaGTTTCCCCGGCGTCTCCAGGAAGTAGTGGTGGGACCCAGATCT | + |
|
Preference number: 5 (lower is better) Translates to: AVNQSEKRWVARRMA*FPRRLQEVVVGPRS Trigger: AGATCTGGGTCCCACCACTACTTCCTGGAGACGCCGGGGAAAGCAGGCCATCCTTCGAGCCACCCATCTCTTCTCCGATTGGTTAACTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474280.1 |
||
| CDS CCA 90 bp | CCAGCGGAGCGCAATAAGAAGGCAGTTAACCAATCGGAGAAGAGATaGGTGGCTCGAAGGATGGCCTGCTTTCCCCGGCGTCTCCAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: PAERNKKAVNQSEKR*VARRMACFPRRLQE Trigger: TTCCTGGAGACGCCGGGGAAAGCAGGCCATCCTTCGAGCCACCCATCTCTTCTCCGATTGGTTAACTGCCTTCTTATTGCGCTCCGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474280.1 |
||
| CDS TCA 90 bp | TCGGATGTTACCAGGGTTAGGCGTCTCCGGCTTACTTCTAAACCTTaGCTTTCTTGCCACCCCCGCCCTCCGTCCCGCTACTGGTTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: SDVTRVRRLRLTSKP*LSCHPRPPSRYWFL Trigger: AAGAAACCAGTAGCGGGACGGAGGGCGGGGGTGGCAAGAAAGTCAAGGTTTAGAAGTAAGCCGGAGACGCCTAACCCTGGTAACATCCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000381570.7 |
||
| CDS CAA 90 bp | AACGGCAGGCCCCAGCCCTTCTTTCCCGACAGCCACGCCGCCCACTaGGCGGCGGGGAGTCGCTCCGCAGCCGGCCCGGAGCTCGCCCGT | + |
|
Preference number: 6 (lower is better) Translates to: NGRPQPFFPDSHAAH*AAGSRSAAGPELAR Trigger: ACGGGCGAGCTCCGGGCCGGCTGCGGAGCGACTCCCCGCCGCCAAGTGGGCGGCGTGGCTGTCGGGAAAGAAGGGCTGGGGCCTGCCGTT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000381588.9 |
||
| CDS CAA 72 bp | CCCCAGCCCTTCTTTCCCGACAGCCACGCCGCCCACTaGGCGGCGGGGAGTCGCTCCGCAGCCGGCCCGGAG | + |
|
Preference number: 6 (lower is better) Translates to: PQPFFPDSHAAH*AAGSRSAAGPE Trigger: CTCCGGGCCGGCTGCGGAGCGACTCCCCGCCGCCAAGTGGGCGGCGTGGCTGTCGGGAAAGAAGGGCTGGGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000381588.9 |
||
| CDS CAA 90 bp | ACGTGTGCTGTGGGCGGCCGTTCTCTCGGGTGCTGGAGGCTGTGGTaGGGAGGCGGGATAGGCTTGCCGCCGCGCCTCCGGAGCCCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: TCAVGGRSLGCWRLW*GGGIGLPPRLRSPL Trigger: CAGCGGGCTCCGGAGGCGCGGCGGCAAGCCTATCCCGCCTCCCAACCACAGCCTCCAGCACCCGAGAGAACGGCCGCCCACAGCACACGT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS CCA 72 bp | GCCGGAAGCCCGTGCTGCAGCGTGGGGTCGTCCAGCTaGAGGGGATACTCGGGAGGAAGAACGGCAGGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: AGSPCCSVGSSS*RGYSGGRTAGP Trigger: GGGGCCTGCCGTTCTTCCTCCCGAGTATCCCCTCCAGCTGGACGACCCCACGCTGCAGCACGGGCTTCCGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS CCA 72 bp | TGGGCCTTCGCCCTCCTGTCCGGAGAACGTGTGCTGTaGGCGGCCGTTCTCTCGGGTGCTGGAGGCTGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: WAFALLSGERVL*AAVLSGAGGCG Trigger: ACCACAGCCTCCAGCACCCGAGAGAACGGCCGCCCACAGCACACGTTCTCCGGACAGGAGGGCGAAGGCCCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000381588.9 ENST00000468480.5 ENST00000474280.1 |
||
| CDS GCA 72 bp | CGGAGAACGTGTGCTGTGGGCGGCCGTTCTCTCGGGTaGTGGAGGCTGTGGTTGGGAGGCGGGATAGGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: RRTCAVGGRSLG*WRLWLGGGIGL Trigger: CAAGCCTATCCCGCCTCCCAACCACAGCCTCCAGCACCCGAGAGAACGGCCGCCCACAGCACACGTTCTCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS CCA 72 bp | AGAACGTGTGCTGTGGGCGGCCGTTCTCTCGGGTGCTaGAGGCTGTGGTTGGGAGGCGGGATAGGCTTGCCG | + |
|
Preference number: 6 (lower is better) Translates to: RTCAVGGRSLGC*RLWLGGGIGLP Trigger: CGGCAAGCCTATCCCGCCTCCCAACCACAGCCTCCAGCACCCGAGAGAACGGCCGCCCACAGCACACGTTCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS CAA 90 bp | AGTGGTGGGACCCAGATCTTTCCCTCGAGCCCACCTCTCCAGGTCTaGGGCCTTCGCCCTCCTGTCCGGAGAACGTGTGCTGTGGGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: SGGTQIFPSSPPLQV*GLRPPVRRTCAVGG Trigger: GCCGCCCACAGCACACGTTCTCCGGACAGGAGGGCGAAGGCCCAAGACCTGGAGAGGTGGGCTCGAGGGAAAGATCTGGGTCCCACCACT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000474280.1 |
||
| CDS GCA 72 bp | AATTGGCCACTGAGGAGAGAAGCCGGAAGCCCGTGCTaGAGCGTGGGGTCGTCCAGCTGGAGGGGATACTCG | + |
|
Preference number: 6 (lower is better) Translates to: NWPLRREAGSPC*SVGSSSWRGYS Trigger: CGAGTATCCCCTCCAGCTGGACGACCCCACGCTGCAGCACGGGCTTCCGGCTTCTCTCCTCAGTGGCCAATT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS GCA 72 bp | TCGAATTGGCCACTGAGGAGAGAAGCCGGAAGCCCGTaGTGCAGCGTGGGGTCGTCCAGCTGGAGGGGATAC | + |
|
Preference number: 6 (lower is better) Translates to: SNWPLRREAGSP*CSVGSSSWRGY Trigger: GTATCCCCTCCAGCTGGACGACCCCACGCTGCAGCACGGGCTTCCGGCTTCTCTCCTCAGTGGCCAATTCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381588.9 ENST00000468480.5 |
||
| CDS TCA 72 bp | ACCAGGGTTAGGCGTCTCCGGCTTACTTCTAAACCTTaGCTTTCTTGCCACCCCCGCCCTCCGTCCCGCTAC | + |
|
Preference number: 6 (lower is better) Translates to: TRVRRLRLTSKP*LSCHPRPPSRY Trigger: GTAGCGGGACGGAGGGCGGGGGTGGCAAGAAAGTCAAGGTTTAGAAGTAAGCCGGAGACGCCTAACCCTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000381570.7 ENST00000476347.1 |
||
| CDS GCA 72 bp | CAATCGGAGAAGAGATGGGTGGCTCGAAGGATGGCCTaGTTTCCCCGGCGTCTCCAGGAAGTAGTGGTGGGA | + |
|
Preference number: 6 (lower is better) Translates to: QSEKRWVARRMA*FPRRLQEVVVG Trigger: TCCCACCACTACTTCCTGGAGACGCCGGGGAAAGCAGGCCATCCTTCGAGCCACCCATCTCTTCTCCGATTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474280.1 |
||
| CDS GCA 72 bp | TTGAGAGCTGCCCATAAGGAAGCAGGTGATAGACGGTaGATCCCAACCAATCACCAGCCAGCGGAGCGCAAT | + |
|
Preference number: 6 (lower is better) Translates to: LRAAHKEAGDRR*IPTNHQPAERN Trigger: ATTGCGCTCCGCTGGCTGGTGATTGGTTGGGATGCACCGTCTATCACCTGCTTCCTTATGGGCAGCTCTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000474280.1 |
||
| CDS CCA 72 bp | ATAAGAAGGCAGTTAACCAATCGGAGAAGAGATGGGTaGCTCGAAGGATGGCCTGCTTTCCCCGGCGTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: IRRQLTNRRRDG*LEGWPAFPGVS Trigger: GGAGACGCCGGGGAAAGCAGGCCATCCTTCGAGCCACCCATCTCTTCTCCGATTGGTTAACTGCCTTCTTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474280.1 |
||
| CDS CCA 72 bp | CGCAATAAGAAGGCAGTTAACCAATCGGAGAAGAGATaGGTGGCTCGAAGGATGGCCTGCTTTCCCCGGCGT | + |
|
Preference number: 6 (lower is better) Translates to: RNKKAVNQSEKR*VARRMACFPRR Trigger: ACGCCGGGGAAAGCAGGCCATCCTTCGAGCCACCCATCTCTTCTCCGATTGGTTAACTGCCTTCTTATTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474280.1 |
||
| CDS CCA 72 bp | AAACTTAGGCCTTTCGTCCTACACTGTCACTGTTCCTaGGTTTACGCCTCCTCTCTCAAAGGCCTTCCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: KLRPFVLHCHCS*VYASSLKGLPS Trigger: GGAAGGAAGGCCTTTGAGAGAGGAGGCGTAAACCCAGGAACAGTGACAGTGTAGGACGAAAGGCCTAAGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000381570.7 ENST00000476347.1 |
||
| CDS CAA 72 bp | AGGCGAAGAATGGGTAGTGTTCCAGTTTCAACTAAATaGTTTGGATTTCGCAACTGCCTGCCACCCCTACTG | + |
|
Preference number: 6 (lower is better) Translates to: RRRMGSVPVSTK*FGFRNCLPPLL Trigger: CAGTAGGGGTGGCAGGCAGTTGCGAAATCCAAACAATTTAGTTGAAACTGGAACACTACCCATTCTTCGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000346166.7 ENST00000381570.7 ENST00000381588.9 |
||
| CDS CAA 72 bp | GAAGAATGGGTAGTGTTCCAGTTTCAACTAAATTGTTaGGATTTCGCAACTGCCTGCCACCCCTACTGTCAC | + |
|
Preference number: 6 (lower is better) Translates to: EEWVVFQFQLNC*DFATACHPYCH Trigger: GTGACAGTAGGGGTGGCAGGCAGTTGCGAAATCCAAACAATTTAGTTGAAACTGGAACACTACCCATTCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000346166.7 ENST00000381570.7 ENST00000381588.9 |
||