Pregenerated sensors for RNF216-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000237738

Ensembl transcript IDs: ENST00000443837.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GGATCCCTTTCACGGGGAGCTCTCAAGCCTTCTGAGCTGCGCCTCTaGAGGTGGGGCCTCTCCCGCCTTCCTGCCGAGCTTCTCACAGCC	+
Preference number: 5 (lower is better) Translates to: GSLSRGALKPSELRL*RWGLSRLPAELLTA Trigger: GGCTGTGAGAAGCTCGGCAGGAAGGCGGGAGAGGCCCCACCTTCAGAGGCGCAGCTCAGAAGGCTTGAGAGCTCCCCGTGAAAGGGATCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000443837.1
CDS TCA 90 bp	TTCTGCACTGCAGGGATCCCTTTCACGGGGAGCTCTCAAGCCTTCTaGGCTGCGCCTCTGAAGGTGGGGCCTCTCCCGCCTTCCTGCCGA	+
Preference number: 5 (lower is better) Translates to: FCTAGIPFTGSSQAF*AAPLKVGPLPPSCR Trigger: TCGGCAGGAAGGCGGGAGAGGCCCCACCTTCAGAGGCGCAGCTCAGAAGGCTTGAGAGCTCCCCGTGAAAGGGATCCCTGCAGTGCAGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000443837.1
CDS GCA 72 bp	GCTGCGCCTCTGAAGGTGGGGCCTCTCCCGCCTTCCTaGCGAGCTTCTCACAGCCCGAGTCCTCCACGTGGT	+
Preference number: 6 (lower is better) Translates to: AAPLKVGPLPPS*RASHSPSPPRG Trigger: ACCACGTGGAGGACTCGGGCTGTGAGAAGCTCGGCAGGAAGGCGGGAGAGGCCCCACCTTCAGAGGCGCAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443837.1
CDS TCA 72 bp	GCAGGGATCCCTTTCACGGGGAGCTCTCAAGCCTTCTaGGCTGCGCCTCTGAAGGTGGGGCCTCTCCCGCCT	+
Preference number: 6 (lower is better) Translates to: AGIPFTGSSQAF*AAPLKVGPLPP Trigger: AGGCGGGAGAGGCCCCACCTTCAGAGGCGCAGCTCAGAAGGCTTGAGAGCTCCCCGTGAAAGGGATCCCTGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000443837.1
CDS CCA 72 bp	CTGCCGAGCTTCTCACAGCCCGAGTCCTCCACGTGGTaGGCTTGTCAGCTCACTGGTTACTCAACACTTCTT	+
Preference number: 6 (lower is better) Translates to: LPSFSQPESSTW*ACQLTGYSTLL Trigger: AAGAAGTGTTGAGTAACCAGTGAGCTGACAAGCCCACCACGTGGAGGACTCGGGCTGTGAGAAGCTCGGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443837.1
CDS CCA 72 bp	TTCCTGCCGAGCTTCTCACAGCCCGAGTCCTCCACGTaGTGGGCTTGTCAGCTCACTGGTTACTCAACACTT	+
Preference number: 6 (lower is better) Translates to: FLPSFSQPESST*WACQLTGYSTL Trigger: AAGTGTTGAGTAACCAGTGAGCTGACAAGCCCACCACGTGGAGGACTCGGGCTGTGAGAAGCTCGGCAGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443837.1
CDS CCA 72 bp	CATTGCTTGAGATTATCACCATCACTGAAACTGCTCTaGGTCGGTTTTGTTCAGAGCAATGCAGGTAACAGA	+
Preference number: 6 (lower is better) Translates to: HCLRLSPSLKLL*VGFVQSNAGNR Trigger: TCTGTTACCTGCATTGCTCTGAACAAAACCGACCCAGAGCAGTTTCAGTGATGGTGATAATCTCAAGCAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443837.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu