RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNF186 (Homo sapiens)

Ensembl gene IDs: ENSG00000178828

Ensembl transcript IDs: ENST00000375121.4

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTaGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGGATAGCC +
Preference number: 1 (lower is better)
Translates to: PKEPVLVRNPLPCSL*KSGGPRAERAAGIA
Trigger: GGCTATCCCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
3UTR CAA 90 bp TTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATaGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGGATA +
Preference number: 2 (lower is better)
Translates to: FPKEPVLVRNPLPCS*WKSGGPRAERAAGI
Trigger: TATCCCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
3UTR-3UTR CCA 90 bp AACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCTGGCCATCTCGGTTGTaGCTTGCAAGTCCCGCTGGC +
Preference number: 2 (lower is better)
Translates to: NQEHWNKRNRSFPHLVMFWPSRL*LASPAG
Trigger: GCCAGCGGGACTTGCAAGCCACAACCGAGATGGCCA...GAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
3UTR-3UTR CAA 90 bp TCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTCCCTTACCCTGTTCATaGTGGAAGTCCGGGGGCCCA +
Preference number: 3 (lower is better)
Translates to: SVVACKSRWHVISQRSQSPLPCS*WKSGGP
Trigger: TGGGCCCCCGGACTTCCACAATGAACAGGGTAAGGG...AGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
3UTR CCA 72 bp CCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTaGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCA +
Preference number: 3 (lower is better)
Translates to: PVLVRNPLPCSL*KSGGPRAERAA
Trigger: TGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
3UTR CCA 72 bp AGCCTGTCATCCAAGCGTGTAATTCTTGACCCAGGCTaGCCATCTCGGTTGTGGCTTGCAAGTCCCGCTGGC +
Preference number: 3 (lower is better)
Translates to: SLSSKRVILDPG*PSRLWLASPAG
Trigger: GCCAGCGGGACTTGCAAGCCACAACCGAGATGGCCAGCCTGGGTCAAGAATTACACGCTTGGATGACAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
3UTR-3UTR CAA 90 bp TATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCAAGCGTGTAATTCTTGACGGCTGGCCATCTCGGTaGTGGCTTGCAAGTCCCGCT +
Preference number: 3 (lower is better)
Translates to: YAIPRASASLSSKRVILDGWPSR*WLASPA
Trigger: AGCGGGACTTGCAAGCCACAACCGAGATGGCCAGCC...GTCAAGAATTACACGCTTGGATGACAGGCTTGCACTTGCCCTTGGGATAGCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp TTACCCTGTTCATTGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGGCATGGCTGGGCCAGCTaGCCCACCACCGCCTCATGG +
Preference number: 4 (lower is better)
Translates to: LPCSLWKSGGPRAERAAGHGWAS*PTTASW
Trigger: CCATGAGGCGGTGGTGGGGCAGCTGGCCCAGCCATG...CCCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp GTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTAGCCAGCAGGAGTAGGTaGGCGGCCAGGCGCCGGGCT +
Preference number: 4 (lower is better)
Translates to: VPLACDFPKEPVLVRNPLASRSR*AARRRA
Trigger: AGCCCGGCGCCTGGCCGCGCACCTACTCCTGCTGGC...TAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp TTACCCTGTTCATTGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGGCAGCGGTGGTGGTTGTaGTGGCTCCTGCGGAGATGG +
Preference number: 4 (lower is better)
Translates to: LPCSLWKSGGPRAERAAGQRWWL*WLLRRW
Trigger: CCATCTCCGCAGGAGCCACCACAACCACCACCGCTG...CCCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp ATCTCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGGGGCCACAGCGGTGGTaGTTGTGGTGGCTCCTGCGG +
Preference number: 4 (lower is better)
Translates to: ISVVACKSRWHVISQRSQGPQRW*LWWLLR
Trigger: CCGCAGGAGCCACCACAACCACCACCGCTGTGGCCC...CTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp TTACCCTGTTCATTGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGGCTGTCGCTCAGCACCTaGGCATTGGCAGAGAGTGTC +
Preference number: 4 (lower is better)
Translates to: LPCSLWKSGGPRAERAAGLSLST*ALAESV
Trigger: GACACTCTCTGCCAATGCCCAGGTGCTGAGCGACAG...CCCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp TCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTGGGCACAGGGACCGGTaGGACACTGTCGCTCAGCAC +
Preference number: 4 (lower is better)
Translates to: SVVACKSRWHVISQRSQSGHRDR*DTVAQH
Trigger: GTGCTGAGCGACAGTGTCCCACCGGTCCCTGTGCCC...AGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp TCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTGGCAGGCCAGCAGCTTaGGCAACCGGGGACAGCTGT +
Preference number: 4 (lower is better)
Translates to: SVVACKSRWHVISQRSQSGRPAA*ATGDSC
Trigger: ACAGCTGTCCCCGGTTGCCCAAGCTGCTGGCCTGCC...AGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR TCA 90 bp CTTACCCTGTTCATTGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGTGGCCAGGTGCCTGTTaGCAACAGCTGTCTGACACT +
Preference number: 4 (lower is better)
Translates to: LTLFIVEVRGPKGRKGCRWPGAC*QQLSDT
Trigger: AGTGTCAGACAGCTGTTGTCAACAGGCACCTGGCCA...CCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR TCA 90 bp CTTACCCTGTTCATTGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGAGTCCCGCTGGCATGTaGTTTCCCAAAGGAGCCAGT +
Preference number: 4 (lower is better)
Translates to: LTLFIVEVRGPKGRKGCRSPAGM*FPKGAS
Trigger: ACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACT...CCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp TTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGAGGAGGGCCAGCAGCTaGCCCGGGTGCTGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: FPKEPVLVRNPLPCSLWKRRASS*PGCWGD
Trigger: GTCTCCCCAGCACCCGGGGCAGCTGCTGGCCCTCCT...CTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTTGGTGCAGGCCATTCTaGGCACAGGGACCGGTGGGA +
Preference number: 4 (lower is better)
Translates to: GLQVPLACDFPKEPVLVRWCRPF*AQGPVG
Trigger: TCCCACCGGTCCCTGTGCCCAGAATGGCCTGCACCA...ACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCACCACCGCCTCATaGTCGCGCAGGCTGCAGATG +
Preference number: 4 (lower is better)
Translates to: VPLACDFPKEPVLVRNPLPTTAS*SRRLQM
Trigger: CATCTGCAGCCTGCGCGACCATGAGGCGGTGGTGGG...TAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp ATCTCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGCGATACCTCTGTGCATaGCTGGGCCAGCTGCCCCAC +
Preference number: 4 (lower is better)
Translates to: ISVVACKSRWHVISQRSQRYLCA*LGQLPH
Trigger: GTGGGGCAGCTGGCCCAGCCATGCACAGAGGTATCG...CTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp TCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTATGGCGCAGAAGGCATaGTGGCAGGCCAGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: SVVACKSRWHVISQRSQSMAQKA*WQASSL
Trigger: CAAGCTGCTGGCCTGCCAGCATGCCTTCTGCGCCAT...AGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTCCTGCGGAGATGGGCTaGGACTGTTGCAGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: GLQVPLACDFPKEPVLVRPAEMG*DCCRVL
Trigger: CAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGG...ACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp CCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGTCCCAGGGGCCACAGCGGTaGTGGTTGTGGTGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: PKEPVLVRNPLPCSLWKSQGPQR*WLWWLL
Trigger: CAGGAGCCACCACAACCACCACCGCTGTGGCCCCTG...GGACTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp CTTACCCTGTTCATTGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGGCTTGCAAGTCCCGCTaGCATGTGATTTCCCAAAGG +
Preference number: 4 (lower is better)
Translates to: LTLFIVEVRGPKGRKGCRACKSR*HVISQR
Trigger: CCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGC...CCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp TCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTGGCCATCTCGGTTGTaGCTTGCAAGTCCCGCTGGC +
Preference number: 4 (lower is better)
Translates to: SVVACKSRWHVISQRSQSWPSRL*LASPAG
Trigger: GCCAGCGGGACTTGCAAGCCACAACCGAGATGGCCA...AGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
3UTR CAA 72 bp GAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATaGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCT +
Preference number: 4 (lower is better)
Translates to: EPVLVRNPLPCS*WKSGGPRAERA
Trigger: AGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR TCA 90 bp GTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTAGGATCCACCAGCCCCTaGGGACAGAGCGATACCTCT +
Preference number: 4 (lower is better)
Translates to: VPLACDFPKEPVLVRNPLGSTSP*GQSDTS
Trigger: AGAGGTATCGCTCTGTCCTCAGGGGCTGGTGGATCC...TAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp CCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGTCCAGCAGCTGCCCCGGGTaGTGGGGAGACAGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: PKEPVLVRNPLPCSLWKSSSCPG*WGDSRR
Trigger: TCTTCTGCTGTCTCCCCAGCACCCGGGGCAGCTGCT...GGACTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTAGTCAGCTGGCGCCGCTaGGACTTGGATGGAATCTGC +
Preference number: 4 (lower is better)
Translates to: VPLACDFPKEPVLVRNPLVSWRR*DLDGIC
Trigger: GCAGATTCCATCCAAGTCCCAGCGGCGCCAGCTGAC...TAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTTCAGCACCTGGGCATTaGCAGAGAGTGTCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: GLQVPLACDFPKEPVLVRSAPGH*QRVSAG
Trigger: GCCAGCTGACACTCTCTGCCAATGCCCAGGTGCTGA...ACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GCCACCAACAGTTTTAGCTATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCTGGCTCCTGCGGAGATaGGCTGGGACTGTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: ATNSFSYAIPRASASLSSWLLRR*AGTVAG
Trigger: CCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCA...GGATGACAGGCTTGCACTTGCCCTTGGGATAGCATAGCTAAAACTGTTGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR TCA 90 bp TTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGTCTGTGGAGCCAGAATaGCCCCCAGCAGGGGCCACA +
Preference number: 4 (lower is better)
Translates to: FPKEPVLVRNPLPCSLWKSVEPE*PPAGAT
Trigger: TGTGGCCCCTGCTGGGGGTCATTCTGGCTCCACAGA...CTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp TATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCAAGCGTGTAATTCTTGACGGCCAGGCGCCGGGCTaGCACGTGGTTTGCACTTAC +
Preference number: 4 (lower is better)
Translates to: YAIPRASASLSSKRVILDGQAPG*HVVCTY
Trigger: GTAAGTGCAAACCACGTGGCAGCCCGGCGCCTGGCC...GTCAAGAATTACACGCTTGGATGACAGGCTTGCACTTGCCCTTGGGATAGCATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GCCACCAACAGTTTTAGCTATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCGCAGAGAGTGTCAGCTaGCGCCGCTGGGACTTGGAT +
Preference number: 4 (lower is better)
Translates to: ATNSFSYAIPRASASLSSAESVS*RRWDLD
Trigger: ATCCAAGTCCCAGCGGCGCCAGCTGACACTCTCTGC...GGATGACAGGCTTGCACTTGCCCTTGGGATAGCATAGCTAAAACTGTTGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GCCACCAACAGTTTTAGCTATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCTGCAGAAGAGAGTCCTaGAGGAGGGCCAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: ATNSFSYAIPRASASLSSCRRES*RRASSC
Trigger: GCAGCTGCTGGCCCTCCTCCAGGACTCTCTTCTGCA...GGATGACAGGCTTGCACTTGCCCTTGGGATAGCATAGCTAAAACTGTTGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp GTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTAATCTCGGTTGTGGCTTaGAAGTCCCGCTGGCATGTG +
Preference number: 4 (lower is better)
Translates to: VPLACDFPKEPVLVRNPLISVVA*KSRWHV
Trigger: CACATGCCAGCGGGACTTGCAAGCCACAACCGAGAT...TAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GCCACCAACAGTTTTAGCTATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCCGCCGGGCTGCCACGTaGTTTGCACTTACTTCATCC +
Preference number: 4 (lower is better)
Translates to: ATNSFSYAIPRASASLSSRRAAT*FALTSS
Trigger: GGATGAAGTAAGTGCAAACCACGTGGCAGCCCGGCG...GGATGACAGGCTTGCACTTGCCCTTGGGATAGCATAGCTAAAACTGTTGGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTATTACCCTGTTCATTGTaGAAGTCCGGGGGCCCAAGG +
Preference number: 4 (lower is better)
Translates to: VPLACDFPKEPVLVRNPLLPCSL*KSGGPR
Trigger: CCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAA...TAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp TTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGGTTGCAGGGTCTTGGTaGAGGCCATTCTGGGCACAG +
Preference number: 4 (lower is better)
Translates to: FPKEPVLVRNPLPCSLWKVAGSW*RPFWAQ
Trigger: CTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAAC...CTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp TTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGGACCAGGTGTTGTCCTaGACGCACAGCAGGAGCTTC +
Preference number: 4 (lower is better)
Translates to: FPKEPVLVRNPLPCSLWKDQVLS*THSRSF
Trigger: GAAGCTCCTGCTGTGCGTGCAGGACAACACCTGGTC...CTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp ATCTCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTGTGTTTCTGCTCTCTaGAGAAGAGAGTCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: ISVVACKSRWHVISQRSQCVSAL*RRESWR
Trigger: CCTCCAGGACTCTCTTCTGCAGAGAGCAGAAACACA...CTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp GGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTCAAGTAGTTTGTGTCTaGTCCCCTAGCCACCAACAG +
Preference number: 4 (lower is better)
Translates to: GLQVPLACDFPKEPVLVRQVVCV*SPSHQQ
Trigger: CTGTTGGTGGCTAGGGGAGCAGACACAAACTACTTG...ACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GCCACCAACAGTTTTAGCTATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCACTGTTGCAGGGTCTTaGTGCAGGCCATTCTGGGCA +
Preference number: 4 (lower is better)
Translates to: ATNSFSYAIPRASASLSSTVAGS*CRPFWA
Trigger: TGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGT...GGATGACAGGCTTGCACTTGCCCTTGGGATAGCATAGCTAAAACTGTTGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp TATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCAAGCGTGTAATTCTTGACCCTCTCCCACCAAGCTaGGGTGTCCTGCTGCCAAGT +
Preference number: 4 (lower is better)
Translates to: YAIPRASASLSSKRVILDPLPPS*GVLLPS
Trigger: ACTTGGCAGCAGGACACCCCAGCTTGGTGGGAGAGG...GTCAAGAATTACACGCTTGGATGACAGGCTTGCACTTGCCCTTGGGATAGCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTAATTCTTGACCCAGGCTaGCCATCTCGGTTGTGGCTT +
Preference number: 4 (lower is better)
Translates to: VPLACDFPKEPVLVRNPLILDPG*PSRLWL
Trigger: AAGCCACAACCGAGATGGCCAGCCTGGGTCAAGAAT...TAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR TCA 90 bp AACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCGGCACAGCGGGCAGGTaGTGGACCAGGTGTTGTCCT +
Preference number: 4 (lower is better)
Translates to: NQEHWNKRNRSFPHLVMFGTAGR*WTRCCP
Trigger: AGGACAACACCTGGTCCATCACCTGCCCGCTGTGCC...GAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp CCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGTCCTTCACTCTGGCCAGGTaGCTGTTGACAACAGCTGTC +
Preference number: 4 (lower is better)
Translates to: PKEPVLVRNPLPCSLWKSFTLAR*LLTTAV
Trigger: GACAGCTGTTGTCAACAGGCACCTGGCCAGAGTGAA...GGACTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp CCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGTCCGGCTGCCACGTGGTTTaGACTTACTTCATCCTGTCC +
Preference number: 4 (lower is better)
Translates to: PKEPVLVRNPLPCSLWKSGCHVV*TYFILS
Trigger: GGACAGGATGAAGTAAGTGCAAACCACGTGGCAGCC...GGACTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp AACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCGGCGCCGCTGGGACTTaGATGGAATCTGCCCCTCCT +
Preference number: 4 (lower is better)
Translates to: NQEHWNKRNRSFPHLVMFGAAGT*MESAPP
Trigger: AGGAGGGGCAGATTCCATCCAAGTCCCAGCGGCGCC...GAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp TTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGCCAGGTCACATTCTGTaGAGCCAGAATGACCCCCAG +
Preference number: 4 (lower is better)
Translates to: FPKEPVLVRNPLPCSLWKPGHIL*SQNDPQ
Trigger: CTGGGGGTCATTCTGGCTCCACAGAATGTGACCTGG...CTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp GTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTAAGGGCACTCAGGCAATaGAAGAGATGTGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: VPLACDFPKEPVLVRNPLRALRQ*KRCGCV
Trigger: AACACAGCCACATCTCTTCCATTGCCTGAGTGCCCT...TAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp ACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCAATGGGCTGGGACTGTTaGAGGGTCTTGGTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: TKNIGIRGTGASPILSCSMGWDC*RVLVQA
Trigger: GGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCAT...TGAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp AACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCGCTGGGGTGTCCTGCTaGCAAGTCAGCAGGATCCAC +
Preference number: 4 (lower is better)
Translates to: NQEHWNKRNRSFPHLVMFAGVSC*QVSRIH
Trigger: GTGGATCCTGCTGACTTGGCAGCAGGACACCCCAGC...GAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp AACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCCAAGCTGGGGTGTCCTaGTGCCAAGTCAGCAGGATC +
Preference number: 4 (lower is better)
Translates to: NQEHWNKRNRSFPHLVMFQAGVS*CQVSRI
Trigger: GATCCTGCTGACTTGGCAGCAGGACACCCCAGCTTG...GAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp TATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCAAGCGTGTAATTCTTGACTATCCCAAGGGCAAGTaGAAGCCTGTCATCCAAGCG +
Preference number: 4 (lower is better)
Translates to: YAIPRASASLSSKRVILDYPKGK*KPVIQA
Trigger: CGCTTGGATGACAGGCTTGCACTTGCCCTTGGGATA...GTCAAGAATTACACGCTTGGATGACAGGCTTGCACTTGCCCTTGGGATAGCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp ACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCACCTCTCTCCCAGAGCTaGCCAGCTTGTTTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: TKNIGIRGTGASPILSCSPLSQS*PACFLA
Trigger: AGCCAAGAAACAAGCTGGGCAGCTCTGGGAGAGAGG...TGAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CCA 90 bp TCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTAAAAACCAAGAACATTaGAATAAGAGGAACAGGAGC +
Preference number: 4 (lower is better)
Translates to: SVVACKSRWHVISQRSQSKNQEH*NKRNRS
Trigger: GCTCCTGTTCCTCTTATTCCAATGTTCTTGGTTTTT...AGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR GCA 90 bp ACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCAATGTGGCTGTGTTTCTaGTCTCTGCAGAAGAGAGTC +
Preference number: 4 (lower is better)
Translates to: TKNIGIRGTGASPILSCSMWLCF*SLQKRV
Trigger: GACTCTCTTCTGCAGAGAGCAGAAACACAGCCACAT...TGAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS GCA 90 bp GCGGTGGTGGTTGTGGTGGCTCCTGCGGAGATGGGCTGGGACTGTTaGAGGGTCTTGGTGCAGGCCATTCTGGGCACAGGGACCGGTGGG +
Preference number: 5 (lower is better)
Translates to: AVVVVVAPAEMGWDC*RVLVQAILGTGTGG
Trigger: CCCACCGGTCCCTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp GGGGCCACAGCGGTGGTGGTTGTGGTGGCTCCTGCGGAGATGGGCTaGGACTGTTGCAGGGTCTTGGTGCAGGCCATTCTGGGCACAGGG +
Preference number: 5 (lower is better)
Translates to: GATAVVVVVAPAEMG*DCCRVLVQAILGTG
Trigger: CCCTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGCTGTGGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS GCA 90 bp AGTCAGCAGGATCCACCAGCCCCTGAGGACAGAGCGATACCTCTGTaGATGGCTGGGCCAGCTGCCCCACCACCGCCTCATGGTCGCGCA +
Preference number: 5 (lower is better)
Translates to: SQQDPPAPEDRAIPL*MAGPAAPPPPHGRA
Trigger: TGCGCGACCATGAGGCGGTGGTGGGGCAGCTGGCCCAGCCATGCACAGAGGTATCGCTCTGTCCTCAGGGGCTGGTGGATCCTGCTGACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp CAGCAGGGGCCACAGCGGTGGTGGTTGTGGTGGCTCCTGCGGAGATaGGCTGGGACTGTTGCAGGGTCTTGGTGCAGGCCATTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: QQGPQRWWLWWLLRR*AGTVAGSWCRPFWA
Trigger: TGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGCTGTGGCCCCTGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp GCTTCAGGCAGATGGCGCAGAAGGCATGCTGGCAGGCCAGCAGCTTaGGCAACCGGGGACAGCTGTAGGGCTCCCGGCACACCAGACACT +
Preference number: 5 (lower is better)
Translates to: ASGRWRRRHAGRPAA*ATGDSCRAPGTPDT
Trigger: AGTGTCTGGTGTGCCGGGAGCCCTACAGCTGTCCCCGGTTGCCCAAGCTGCTGGCCTGCCAGCATGCCTTCTGCGCCATCTGCCTGAAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS TCA 90 bp AAGCTGGGGTGTCCTGCTGCCAAGTCAGCAGGATCCACCAGCCCCTaGGGACAGAGCGATACCTCTGTGCATGGCTGGGCCAGCTGCCCC +
Preference number: 5 (lower is better)
Translates to: KLGCPAAKSAGSTSP*GQSDTSVHGWASCP
Trigger: GGGGCAGCTGGCCCAGCCATGCACAGAGGTATCGCTCTGTCCTCAGGGGCTGGTGGATCCTGCTGACTTGGCAGCAGGACACCCCAGCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp GCCATTCTGGGCACAGGGACCGGTGGGACACTGTCGCTCAGCACCTaGGCATTGGCAGAGAGTGTCAGCTGGCGCCGCTGGGACTTGGAT +
Preference number: 5 (lower is better)
Translates to: AILGTGTGGTLSLST*ALAESVSWRRWDLD
Trigger: ATCCAAGTCCCAGCGGCGCCAGCTGACACTCTCTGCCAATGCCCAGGTGCTGAGCGACAGTGTCCCACCGGTCCCTGTGCCCAGAATGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp CGGAGATGGGCTGGGACTGTTGCAGGGTCTTGGTGCAGGCCATTCTaGGCACAGGGACCGGTGGGACACTGTCGCTCAGCACCTGGGCAT +
Preference number: 5 (lower is better)
Translates to: RRWAGTVAGSWCRPF*AQGPVGHCRSAPGH
Trigger: ATGCCCAGGTGCTGAGCGACAGTGTCCCACCGGTCCCTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp TTGTGGTGGCTCCTGCGGAGATGGGCTGGGACTGTTGCAGGGTCTTaGTGCAGGCCATTCTGGGCACAGGGACCGGTGGGACACTGTCGC +
Preference number: 5 (lower is better)
Translates to: LWWLLRRWAGTVAGS*CRPFWAQGPVGHCR
Trigger: GCGACAGTGTCCCACCGGTCCCTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp ATTCTGTGGAGCCAGAATGACCCCCAGCAGGGGCCACAGCGGTGGTaGTTGTGGTGGCTCCTGCGGAGATGGGCTGGGACTGTTGCAGGG +
Preference number: 5 (lower is better)
Translates to: ILWSQNDPQQGPQRW*LWWLLRRWAGTVAG
Trigger: CCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGCTGTGGCCCCTGCTGGGGGTCATTCTGGCTCCACAGAAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp TGGGCACAGGGACCGGTGGGACACTGTCGCTCAGCACCTGGGCATTaGCAGAGAGTGTCAGCTGGCGCCGCTGGGACTTGGATGGAATCT +
Preference number: 5 (lower is better)
Translates to: WAQGPVGHCRSAPGH*QRVSAGAAGTWMES
Trigger: AGATTCCATCCAAGTCCCAGCGGCGCCAGCTGACACTCTCTGCCAATGCCCAGGTGCTGAGCGACAGTGTCCCACCGGTCCCTGTGCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp CACATTCTGTGGAGCCAGAATGACCCCCAGCAGGGGCCACAGCGGTaGTGGTTGTGGTGGCTCCTGCGGAGATGGGCTGGGACTGTTGCA +
Preference number: 5 (lower is better)
Translates to: HILWSQNDPQQGPQR*WLWWLLRRWAGTVA
Trigger: TGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGCTGTGGCCCCTGCTGGGGGTCATTCTGGCTCCACAGAATGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp AAGGCCAGCAGGAGTAGGTGCGCGGCCAGGCGCCGGGCTGCCACGTaGTTTGCACTTACTTCATCCTGTCCATCCTCTCCCACCAAGCTG +
Preference number: 5 (lower is better)
Translates to: KASRSRCAARRRAAT*FALTSSCPSSPTKL
Trigger: CAGCTTGGTGGGAGAGGATGGACAGGATGAAGTAAGTGCAAACCACGTGGCAGCCCGGCGCCTGGCCGCGCACCTACTCCTGCTGGCCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp CTGTTGCAGGGTCTTGGTGCAGGCCATTCTGGGCACAGGGACCGGTaGGACACTGTCGCTCAGCACCTGGGCATTGGCAGAGAGTGTCAG +
Preference number: 5 (lower is better)
Translates to: LLQGLGAGHSGHRDR*DTVAQHLGIGRECQ
Trigger: CTGACACTCTCTGCCAATGCCCAGGTGCTGAGCGACAGTGTCCCACCGGTCCCTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp TTACCCTGTTCATTGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGGGGCTGGCCATCTCGGTaGTGGCTTGCAAGTCCCGCT +
Preference number: 5 (lower is better)
Translates to: LPCSLWKSGGPRAERAAGGWPSR*WLASPA
Trigger: AGCGGGACTTGCAAGCCACAACCGAGATGGCCAGCC...CCCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp ATCTCGGTTGTGGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTGGCAGGCCAGCAGCTaGGGCAACCGGGGACAGCTG +
Preference number: 5 (lower is better)
Translates to: ISVVACKSRWHVISQRSQWQASS*GNRGQL
Trigger: CAGCTGTCCCCGGTTGCCCAAGCTGCTGGCCTGCCA...CTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCCACAACCGAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 90 bp CTGGGCATTGGCAGAGAGTGTCAGCTGGCGCCGCTGGGACTTGGATaGAATCTGCCCCTCCTTTTCACTCTGGCCAGGTGCCTGTTGACA +
Preference number: 5 (lower is better)
Translates to: LGIGRECQLAPLGLG*NLPLLFTLARCLLT
Trigger: TGTCAACAGGCACCTGGCCAGAGTGAAAAGGAGGGGCAGATTCCATCCAAGTCCCAGCGGCGCCAGCTGACACTCTCTGCCAATGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp GGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTGATGGGCTGGGACTGTaGCAGGGTCTTGGTGCAGGC +
Preference number: 5 (lower is better)
Translates to: GLQVPLACDFPKEPVLVRDGLGL*QGLGAG
Trigger: GCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATC...ACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp CTTACCCTGTTCATTGTGGAAGTCCGGGGGCCCAAGGGCAGAAAGGGCTGCAGGGGGCTGCCACGTGGTTaGCACTTACTTCATCCTGTC +
Preference number: 5 (lower is better)
Translates to: LTLFIVEVRGPKGRKGCRGLPRG*HLLHPV
Trigger: GACAGGATGAAGTAAGTGCAAACCACGTGGCAGCCC...CCTGCAGCCCTTTCTGCCCTTGGGCCCCCGGACTTCCACAATGAACAGGGTAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS GCA 90 bp TCATCAGAGGGCACTCAGGCAATGGAAGAGATGTGGCTGTGTTTCTaGTCTCTGCAGAAGAGAGTCCTGGAGGAGGGCCAGCAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: SSEGTQAMEEMWLCF*SLQKRVLEEGQQLP
Trigger: GGGCAGCTGCTGGCCCTCCTCCAGGACTCTCTTCTGCAGAGAGCAGAAACACAGCCACATCTCTTCCATTGCCTGAGTGCCCTCTGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp GTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACTCAGCACCTGGGCATaGGCAGAGAGTGTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: VPLACDFPKEPVLVRNPLLSTWA*AESVSW
Trigger: CCAGCTGACACTCTCTGCCAATGCCCAGGTGCTGAG...TAAGGGGTTACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp GCCACCAACAGTTTTAGCTATGCTATCCCAAGGGCAAGTGCAAGCCTGTCATCCGTGATGGACCAGGTGTaGTCCTGCACGCACAGCAGG +
Preference number: 5 (lower is better)
Translates to: ATNSFSYAIPRASASLSSVMDQV*SCTHSR
Trigger: CCTGCTGTGCGTGCAGGACAACACCTGGTCCATCAC...GGATGACAGGCTTGCACTTGCCCTTGGGATAGCATAGCTAAAACTGTTGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp CCAAAGGAGCCAGTCTTAGTCCGTAACCCCTTACCCTGTTCATTGTGGAAGTCCCATCTCGGTTGTGGCTaGCAAGTCCCGCTGGCATGT +
Preference number: 5 (lower is better)
Translates to: PKEPVLVRNPLPCSLWKSHLGCG*QVPLAC
Trigger: ACATGCCAGCGGGACTTGCAAGCCACAACCGAGATG...GGACTTCCACAATGAACAGGGTAAGGGGTTACGGACTAAGACTGGCTCCTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp ACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCATGGCGCCGCTGGGACTaGGATGGAATCTGCCCCTCC +
Preference number: 5 (lower is better)
Translates to: TKNIGIRGTGASPILSCSWRRWD*DGICPS
Trigger: GGAGGGGCAGATTCCATCCAAGTCCCAGCGGCGCCA...TGAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp GGCTTGCAAGTCCCGCTGGCATGTGATTTCCCAAAGGAGCCAGTCTTAGTCCGTGGAGCTTCCCCCATCTaGTCATGTTCAAGTAGTTTG +
Preference number: 5 (lower is better)
Translates to: GLQVPLACDFPKEPVLVRGASPI*SCSSSL
Trigger: CAAACTACTTGAACATGACAAGATGGGGGAAGCTCC...ACGGACTAAGACTGGCTCCTTTGGGAAATCACATGCCAGCGGGACTTGCAAGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS-3UTR CAA 90 bp AACCAAGAACATTGGAATAAGAGGAACAGGAGCTTCCCCCATCTTGTCATGTTCCCCTTACCCTGTTCATaGTGGAAGTCCGGGGGCCCA +
Preference number: 5 (lower is better)
Translates to: NQEHWNKRNRSFPHLVMFPLPCS*WKSGGP
Trigger: TGGGCCCCCGGACTTCCACAATGAACAGGGTAAGGG...GAACATGACAAGATGGGGGAAGCTCCTGTTCCTCTTATTCCAATGTTCTTGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS GCA 72 bp GGACAGAGCGATACCTCTGTGCATGGCTGGGCCAGCTaGCCCACCACCGCCTCATGGTCGCGCAGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: GQSDTSVHGWAS*PTTASWSRRLQ
Trigger: CTGCAGCCTGCGCGACCATGAGGCGGTGGTGGGGCAGCTGGCCCAGCCATGCACAGAGGTATCGCTCTGTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp GGCACAGGGACCGGTGGGACACTGTCGCTCAGCACCTaGGCATTGGCAGAGAGTGTCAGCTGGCGCCGCTGG +
Preference number: 6 (lower is better)
Translates to: GTGTGGTLSLST*ALAESVSWRRW
Trigger: CCAGCGGCGCCAGCTGACACTCTCTGCCAATGCCCAGGTGCTGAGCGACAGTGTCCCACCGGTCCCTGTGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp TGGAGCCAGAATGACCCCCAGCAGGGGCCACAGCGGTaGTGGTTGTGGTGGCTCCTGCGGAGATGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: WSQNDPQQGPQR*WLWWLLRRWAG
Trigger: CCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGCTGTGGCCCCTGCTGGGGGTCATTCTGGCTCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp GGACCGGTGGGACACTGTCGCTCAGCACCTGGGCATTaGCAGAGAGTGTCAGCTGGCGCCGCTGGGACTTGG +
Preference number: 6 (lower is better)
Translates to: GPVGHCRSAPGH*QRVSAGAAGTW
Trigger: CCAAGTCCCAGCGGCGCCAGCTGACACTCTCTGCCAATGCCCAGGTGCTGAGCGACAGTGTCCCACCGGTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp AGCCAGAATGACCCCCAGCAGGGGCCACAGCGGTGGTaGTTGTGGTGGCTCCTGCGGAGATGGGCTGGGACT +
Preference number: 6 (lower is better)
Translates to: SQNDPQQGPQRW*LWWLLRRWAGT
Trigger: AGTCCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGCTGTGGCCCCTGCTGGGGGTCATTCTGGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CAA 72 bp GGGACCGGTGGGACACTGTCGCTCAGCACCTGGGCATaGGCAGAGAGTGTCAGCTGGCGCCGCTGGGACTTG +
Preference number: 6 (lower is better)
Translates to: GTGGTLSLSTWA*AESVSWRRWDL
Trigger: CAAGTCCCAGCGGCGCCAGCTGACACTCTCTGCCAATGCCCAGGTGCTGAGCGACAGTGTCCCACCGGTCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CAA 90 bp AGCGGTGGTGGTTGTGGTGGCTCCTGCGGAGATGGGCTGGGACTGTaGCAGGGTCTTGGTGCAGGCCATTCTGGGCACAGGGACCGGTGG +
Preference number: 6 (lower is better)
Translates to: SGGGCGGSCGDGLGL*QGLGAGHSGHRDRW
Trigger: CCACCGGTCCCTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS GCA 72 bp CGGCACAGCGGGCAGGTGATGGACCAGGTGTTGTCCTaGACGCACAGCAGGAGCTTCAGGCAGATGGCGCAG +
Preference number: 6 (lower is better)
Translates to: RHSGQVMDQVLS*THSRSFRQMAQ
Trigger: CTGCGCCATCTGCCTGAAGCTCCTGCTGTGCGTGCAGGACAACACCTGGTCCATCACCTGCCCGCTGTGCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS GCA 72 bp GATCCACCAGCCCCTGAGGACAGAGCGATACCTCTGTaGATGGCTGGGCCAGCTGCCCCACCACCGCCTCAT +
Preference number: 6 (lower is better)
Translates to: DPPAPEDRAIPL*MAGPAAPPPPH
Trigger: ATGAGGCGGTGGTGGGGCAGCTGGCCCAGCCATGCACAGAGGTATCGCTCTGTCCTCAGGGGCTGGTGGATC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp CCACAGCGGTGGTGGTTGTGGTGGCTCCTGCGGAGATaGGCTGGGACTGTTGCAGGGTCTTGGTGCAGGCCA +
Preference number: 6 (lower is better)
Translates to: PQRWWLWWLLRR*AGTVAGSWCRP
Trigger: TGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGCTGTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp GCTCCCGGCACACCAGACACTCCAGGTCACATTCTGTaGAGCCAGAATGACCCCCAGCAGGGGCCACAGCGG +
Preference number: 6 (lower is better)
Translates to: APGTPDTPGHIL*SQNDPQQGPQR
Trigger: CCGCTGTGGCCCCTGCTGGGGGTCATTCTGGCTCCACAGAATGTGACCTGGAGTGTCTGGTGTGCCGGGAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CAA 90 bp CTGGGCACAGGGACCGGTGGGACACTGTCGCTCAGCACCTGGGCATaGGCAGAGAGTGTCAGCTGGCGCCGCTGGGACTTGGATGGAATC +
Preference number: 6 (lower is better)
Translates to: LGTGTGGTLSLSTWA*AESVSWRRWDLDGI
Trigger: GATTCCATCCAAGTCCCAGCGGCGCCAGCTGACACTCTCTGCCAATGCCCAGGTGCTGAGCGACAGTGTCCCACCGGTCCCTGTGCCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS GCA 72 bp GTTGTGGTGGCTCCTGCGGAGATGGGCTGGGACTGTTaGAGGGTCTTGGTGCAGGCCATTCTGGGCACAGGG +
Preference number: 6 (lower is better)
Translates to: VVVAPAEMGWDC*RVLVQAILGTG
Trigger: CCCTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp TCGCTCAGCACCTGGGCATTGGCAGAGAGTGTCAGCTaGCGCCGCTGGGACTTGGATGGAATCTGCCCCTCC +
Preference number: 6 (lower is better)
Translates to: SLSTWALAESVS*RRWDLDGICPS
Trigger: GGAGGGGCAGATTCCATCCAAGTCCCAGCGGCGCCAGCTGACACTCTCTGCCAATGCCCAGGTGCTGAGCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp GGTCTTGGTGCAGGCCATTCTGGGCACAGGGACCGGTaGGACACTGTCGCTCAGCACCTGGGCATTGGCAGA +
Preference number: 6 (lower is better)
Translates to: GLGAGHSGHRDR*DTVAQHLGIGR
Trigger: TCTGCCAATGCCCAGGTGCTGAGCGACAGTGTCCCACCGGTCCCTGTGCCCAGAATGGCCTGCACCAAGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp GCTGGGACTGTTGCAGGGTCTTGGTGCAGGCCATTCTaGGCACAGGGACCGGTGGGACACTGTCGCTCAGCA +
Preference number: 6 (lower is better)
Translates to: AGTVAGSWCRPF*AQGPVGHCRSA
Trigger: TGCTGAGCGACAGTGTCCCACCGGTCCCTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp GCGGTGGTGGTTGTGGTGGCTCCTGCGGAGATGGGCTaGGACTGTTGCAGGGTCTTGGTGCAGGCCATTCTG +
Preference number: 6 (lower is better)
Translates to: AVVVVVAPAEMG*DCCRVLVQAIL
Trigger: CAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAACCACCACCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CCA 72 bp AGGAGTAGGTGCGCGGCCAGGCGCCGGGCTGCCACGTaGTTTGCACTTACTTCATCCTGTCCATCCTCTCCC +
Preference number: 6 (lower is better)
Translates to: RSRCAARRRAAT*FALTSSCPSSP
Trigger: GGGAGAGGATGGACAGGATGAAGTAAGTGCAAACCACGTGGCAGCCCGGCGCCTGGCCGCGCACCTACTCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CAA 72 bp GGTTGTGGTGGCTCCTGCGGAGATGGGCTGGGACTGTaGCAGGGTCTTGGTGCAGGCCATTCTGGGCACAGG +
Preference number: 6 (lower is better)
Translates to: GCGGSCGDGLGL*QGLGAGHSGHR
Trigger: CCTGTGCCCAGAATGGCCTGCACCAAGACCCTGCAACAGTCCCAGCCCATCTCCGCAGGAGCCACCACAACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS CAA 72 bp GTAGGTGCGCGGCCAGGCGCCGGGCTGCCACGTGGTTaGCACTTACTTCATCCTGTCCATCCTCTCCCACCA +
Preference number: 6 (lower is better)
Translates to: VGARPGAGLPRG*HLLHPVHPLPP
Trigger: TGGTGGGAGAGGATGGACAGGATGAAGTAAGTGCAAACCACGTGGCAGCCCGGCGCCTGGCCGCGCACCTAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS GCA 72 bp CTGTCCATCCTCTCCCACCAAGCTGGGGTGTCCTGCTaGCAAGTCAGCAGGATCCACCAGCCCCTGAGGACA +
Preference number: 6 (lower is better)
Translates to: LSILSHQAGVSC*QVSRIHQPLRT
Trigger: TGTCCTCAGGGGCTGGTGGATCCTGCTGACTTGGCAGCAGGACACCCCAGCTTGGTGGGAGAGGATGGACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375121.4
CDS GCA 72 bp GGCACTCAGGCAATGGAAGAGATGTGGCTGTGTTTCTaGTCTCTGCAGAAGAGAGTCCTGGAGGAGGGCCAG +
Preference number: 6 (lower is better)
Translates to: GTQAMEEMWLCF*SLQKRVLEEGQ
Trigger: CTGGCCCTCCTCCAGGACTCTCTTCTGCAGAGAGCAGAAACACAGCCACATCTCTTCCATTGCCTGAGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375121.4