Pregenerated sensors for RNF148 (Homo sapiens)
Ensembl gene IDs: ENSG00000235631Ensembl transcript IDs: ENST00000434824.2, ENST00000447240.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TTCTCCAGATTTCTTAAGTTTTCAGGATGTCACACTTaGACATGGGACATGTCCTATGGGCTAAAAGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: FSRFLKFSGCHT*TWDMSYGLKAR Trigger: CCTGGCTTTTAGCCCATAGGACATGTCCCATGTGCAAGTGTGACATCCTGAAAACTTAAGAAATCTGGAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447240.1 |
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| CDS TCA 90 bp | CCTTCAGGAAGTGCCACCACACCAGACACCCTTTCCAGAGGAGAATaGTTCCCGAACACTCCACTCTCTCCTAATTCCGATGTGATCTCA | + |
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Preference number: 5 (lower is better) Translates to: PSGSATTPDTLSRGE*FPNTPLSPNSDVIS Trigger: TGAGATCACATCGGAATTAGGAGAGAGTGGAGTGTTCGGGAATCATTCTCCTCTGGAAAGGGTGTCTGGTGTGGTGGCACTTCCTGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434824.2 |
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| CDS TCA 90 bp | TTTATGTGTAAAAGTACAGCCTCCACGTTCGATGAGGGCCAGCCATaGGTCTGCCTGTTTGGGCCTGCTGAAATTGGTCAAAGGATGACA | + |
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Preference number: 5 (lower is better) Translates to: FMCKSTASTFDEGQP*VCLFGPAEIGQRMT Trigger: TGTCATCCTTTGACCAATTTCAGCAGGCCCAAACAGGCAGACTCATGGCTGGCCCTCATCGAACGTGGAGGCTGTACTTTTACACATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434824.2 |
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| CDS TCA 90 bp | GAGGAGAATGATTCCCGAACACTCCACTCTCTCCTAATTCCGATGTaGTCTCATTTCCAACCTGAAATGTTATATTCAGGTGAGCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: EENDSRTLHSLLIPM*SHFQPEMLYSGELS Trigger: GGACAGCTCACCTGAATATAACATTTCAGGTTGGAAATGAGATCACATCGGAATTAGGAGAGAGTGGAGTGTTCGGGAATCATTCTCCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434824.2 |
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| CDS GCA 90 bp | AGTAGAAAGATACTAAGCCTCAAAAGTCCAGATGAAACAGAACTATaGGTCGAAGGGGTAATTCTAAGGAAGCTCATGCCTCCATTTGTC | + |
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Preference number: 5 (lower is better) Translates to: SRKILSLKSPDETEL*VEGVILRKLMPPFV Trigger: GACAAATGGAGGCATGAGCTTCCTTAGAATTACCCCTTCGACGCATAGTTCTGTTTCATCTGGACTTTTGAGGCTTAGTATCTTTCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000434824.2 ENST00000447240.1 |
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| CDS CCA 90 bp | ATAAAGAAGATAGCTTGTTGGCGGCAGATTACTAAAGCACATAAATaGAAAAGGTCTCCCTGGATCAAAGCTATCTTGCTCCTTCCAGTA | + |
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Preference number: 5 (lower is better) Translates to: IKKIACWRQITKAHK*KRSPWIKAILLLPV Trigger: TACTGGAAGGAGCAAGATAGCTTTGATCCAGGGAGACCTTTTCCATTTATGTGCTTTAGTAATCTGCCGCCAACAAGCTATCTTCTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434824.2 ENST00000447240.1 |
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| CDS TCA 72 bp | AAAAGTACAGCCTCCACGTTCGATGAGGGCCAGCCATaGGTCTGCCTGTTTGGGCCTGCTGAAATTGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: KSTASTFDEGQP*VCLFGPAEIGQ Trigger: TTGACCAATTTCAGCAGGCCCAAACAGGCAGACTCATGGCTGGCCCTCATCGAACGTGGAGGCTGTACTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434824.2 |
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| CDS TCA 72 bp | AGTGCCACCACACCAGACACCCTTTCCAGAGGAGAATaGTTCCCGAACACTCCACTCTCTCCTAATTCCGAT | + |
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Preference number: 6 (lower is better) Translates to: SATTPDTLSRGE*FPNTPLSPNSD Trigger: ATCGGAATTAGGAGAGAGTGGAGTGTTCGGGAATCATTCTCCTCTGGAAAGGGTGTCTGGTGTGGTGGCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434824.2 |
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| CDS CAA 90 bp | TCGCAGTTGAAGCTGGTCAATAGCTTTCTTCACATCTGTCTTTATTaGACTTCGCCTCCTGGTGAAAGAATTGGGCACTCTAGGTGTAAG | + |
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Preference number: 6 (lower is better) Translates to: SQLKLVNSFLHICLY*TSPPGERIGHSRCK Trigger: CTTACACCTAGAGTGCCCAATTCTTTCACCAGGAGGCGAAGTCAAATAAAGACAGATGTGAAGAAAGCTATTGACCAGCTTCAACTGCGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434824.2 |
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| CDS GCA 72 bp | ATACTAAGCCTCAAAAGTCCAGATGAAACAGAACTATaGGTCGAAGGGGTAATTCTAAGGAAGCTCATGCCT | + |
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Preference number: 6 (lower is better) Translates to: ILSLKSPDETEL*VEGVILRKLMP Trigger: AGGCATGAGCTTCCTTAGAATTACCCCTTCGACGCATAGTTCTGTTTCATCTGGACTTTTGAGGCTTAGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000434824.2 ENST00000447240.1 |
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| CDS TCA 72 bp | GATTCCCGAACACTCCACTCTCTCCTAATTCCGATGTaGTCTCATTTCCAACCTGAAATGTTATATTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: DSRTLHSLLIPM*SHFQPEMLYSG Trigger: ACCTGAATATAACATTTCAGGTTGGAAATGAGATCACATCGGAATTAGGAGAGAGTGGAGTGTTCGGGAATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434824.2 |
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| CDS GCA 72 bp | CATAGACTCCTTTCTGAATCGAGTGCAAAATTTCCATaGCTTTCAGGTTGCTTATCATCACCGCGACTATAT | + |
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Preference number: 6 (lower is better) Translates to: HRLLSESSAKFP*LSGCLSSPRLY Trigger: ATATAGTCGCGGTGATGATAAGCAACCTGAAAGGCATGGAAATTTTGCACTCGATTCAGAAAGGAGTCTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434824.2 ENST00000447240.1 |
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