Pregenerated sensors for RNF138 (Homo sapiens)
Ensembl gene IDs: ENSG00000134758Ensembl transcript IDs: ENST00000261593.8, ENST00000578914.1, ENST00000580519.1, ENST00000585103.5
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGAGATTCGCCCGCCGCCGCCAGCAGCTCTGTCTTGGCATTGCGCTaGCTACAGCCTACCCGGCCGTCACCGAACGCGGGAGCGCCGGGG | + |
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Preference number: 5 (lower is better) Translates to: GDSPAAASSSVLALR*LQPTRPSPNAGAPG Trigger: CCCCGGCGCTCCCGCGTTCGGTGACGGCCGGGTAGGCTGTAGGCAGCGCAATGCCAAGACAGAGCTGCTGGCGGCGGCGGGCGAATCTCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000261593.8 ENST00000578914.1 ENST00000580519.1 ENST00000585103.5 |
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| CDS GCA 90 bp | TGCAGGGAGATTCGCCCGCCGCCGCCAGCAGCTCTGTCTTGGCATTaGGCTGCCTACAGCCTACCCGGCCGTCACCGAACGCGGGAGCGC | + |
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Preference number: 5 (lower is better) Translates to: CREIRPPPPAALSWH*AAYSLPGRHRTRER Trigger: GCGCTCCCGCGTTCGGTGACGGCCGGGTAGGCTGTAGGCAGCGCAATGCCAAGACAGAGCTGCTGGCGGCGGCGGGCGAATCTCCCTGCA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000261593.8 ENST00000578914.1 ENST00000580519.1 ENST00000585103.5 |
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| CDS CCA 90 bp | TCATGGTGCAGGGAGATTCGCCCGCCGCCGCCAGCAGCTCTGTCTTaGCATTGCGCTGCCTACAGCCTACCCGGCCGTCACCGAACGCGG | + |
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Preference number: 5 (lower is better) Translates to: SWCREIRPPPPAALS*HCAAYSLPGRHRTR Trigger: CCGCGTTCGGTGACGGCCGGGTAGGCTGTAGGCAGCGCAATGCCAAGACAGAGCTGCTGGCGGCGGCGGGCGAATCTCCCTGCACCATGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000261593.8 ENST00000578914.1 ENST00000580519.1 ENST00000585103.5 |
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| CDS GCA 72 bp | CCCGCCGCCGCCAGCAGCTCTGTCTTGGCATTGCGCTaGCTACAGCCTACCCGGCCGTCACCGAACGCGGGA | + |
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Preference number: 6 (lower is better) Translates to: PAAASSSVLALR*LQPTRPSPNAG Trigger: TCCCGCGTTCGGTGACGGCCGGGTAGGCTGTAGGCAGCGCAATGCCAAGACAGAGCTGCTGGCGGCGGCGGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000261593.8 ENST00000578914.1 ENST00000580519.1 ENST00000585103.5 |
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| CDS CAA 90 bp | GTGCAGGGAGATTCGCCCGCCGCCGCCAGCAGCTCTGTCTTGGCATaGCGCTGCCTACAGCCTACCCGGCCGTCACCGAACGCGGGAGCG | + |
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Preference number: 6 (lower is better) Translates to: VQGDSPAAASSSVLA*RCLQPTRPSPNAGA Trigger: CGCTCCCGCGTTCGGTGACGGCCGGGTAGGCTGTAGGCAGCGCAATGCCAAGACAGAGCTGCTGGCGGCGGCGGGCGAATCTCCCTGCAC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000261593.8 ENST00000578914.1 ENST00000580519.1 ENST00000585103.5 |
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| CDS CAA 90 bp | CTCATGGTGCAGGGAGATTCGCCCGCCGCCGCCAGCAGCTCTGTCTaGGCATTGCGCTGCCTACAGCCTACCCGGCCGTCACCGAACGCG | + |
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Preference number: 6 (lower is better) Translates to: LMVQGDSPAAASSSV*ALRCLQPTRPSPNA Trigger: CGCGTTCGGTGACGGCCGGGTAGGCTGTAGGCAGCGCAATGCCAAGACAGAGCTGCTGGCGGCGGCGGGCGAATCTCCCTGCACCATGAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000261593.8 ENST00000578914.1 ENST00000580519.1 ENST00000585103.5 |
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| CDS CCA 72 bp | AGGGAGATTCGCCCGCCGCCGCCAGCAGCTCTGTCTTaGCATTGCGCTGCCTACAGCCTACCCGGCCGTCAC | + |
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Preference number: 6 (lower is better) Translates to: REIRPPPPAALS*HCAAYSLPGRH Trigger: GTGACGGCCGGGTAGGCTGTAGGCAGCGCAATGCCAAGACAGAGCTGCTGGCGGCGGCGGGCGAATCTCCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000261593.8 ENST00000578914.1 ENST00000580519.1 ENST00000585103.5 |
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| CDS CAA 72 bp | CAGGGAGATTCGCCCGCCGCCGCCAGCAGCTCTGTCTaGGCATTGCGCTGCCTACAGCCTACCCGGCCGTCA | + |
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Preference number: 6 (lower is better) Translates to: QGDSPAAASSSV*ALRCLQPTRPS Trigger: TGACGGCCGGGTAGGCTGTAGGCAGCGCAATGCCAAGACAGAGCTGCTGGCGGCGGCGGGCGAATCTCCCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000261593.8 ENST00000578914.1 ENST00000580519.1 ENST00000585103.5 |
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| CDS TCA 72 bp | GCCAATGAGTTCAAGGCCCGCCTGGGTAACACAGCATaGCCCTGTCTACGTGCTGACAGGCCGTGGTCCGCA | + |
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Preference number: 6 (lower is better) Translates to: ANEFKARLGNTA*PCLRADRPWSA Trigger: TGCGGACCACGGCCTGTCAGCACGTAGACAGGGTCATGCTGTGTTACCCAGGCGGGCCTTGAACTCATTGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580519.1 |
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