Pregenerated sensors for RHOA-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000235908Ensembl transcript IDs: ENST00000428083.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCTGGGACATACTGCACAGAGGACTCAATCTTAGCTCAGCTCCTTaGGCCAGCATGACCTTAAACAAGTGGCTCAATATCTTGGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: SWDILHRGLNLSSAP*ASMTLNKWLNILEQ Trigger: TTGCTCCAAGATATTGAGCCACTTGTTTAAGGTCATGCTGGCCCAAGGAGCTGAGCTAAGATTGAGTCCTCTGTGCAGTATGTCCCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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| CDS GCA 90 bp | ACAACATCCTTGACCCACCTGCTGCCCTGTCATGACAGGGAGGGCTaGAGCACAAGTTTATTAATAGATACCTCATCATCTTCAGCACAA | + |
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Preference number: 5 (lower is better) Translates to: TTSLTHLLPCHDREG*STSLLIDTSSSSAQ Trigger: TTGTGCTGAAGATGATGAGGTATCTATTAATAAACTTGTGCTGCAGCCCTCCCTGTCATGACAGGGCAGCAGGTGGGTCAAGGATGTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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| CDS GCA 90 bp | ATAACTGCTGAAAATGATCTAAGTGAACCAACGGCATGGAATACGTaGTCTTTCTCTGTCCTGGGACATACTGCACAGAGGACTCAATCT | + |
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Preference number: 5 (lower is better) Translates to: ITAENDLSEPTAWNT*SFSVLGHTAQRTQS Trigger: AGATTGAGTCCTCTGTGCAGTATGTCCCAGGACAGAGAAAGAGCACGTATTCCATGCCGTTGGTTCACTTAGATCATTTTCAGCAGTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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| CDS CCA 90 bp | CAATCAATCATAACTGCTGAAAATGATCTAAGTGAACCAACGGCATaGAATACGTGCTCTTTCTCTGTCCTGGGACATACTGCACAGAGG | + |
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Preference number: 5 (lower is better) Translates to: QSIITAENDLSEPTA*NTCSFSVLGHTAQR Trigger: CCTCTGTGCAGTATGTCCCAGGACAGAGAAAGAGCACGTATTCCATGCCGTTGGTTCACTTAGATCATTTTCAGCAGTTATGATTGATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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| CDS CAA 90 bp | CAAGCAGACCCTCAAAGGCTGTTTGTGGTAATGACGACAACATCCTaGACCCACCTGCTGCCCTGTCATGACAGGGAGGGCTGCAGCACA | + |
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Preference number: 6 (lower is better) Translates to: QADPQRLFVVMTTTS*THLLPCHDREGCST Trigger: TGTGCTGCAGCCCTCCCTGTCATGACAGGGCAGCAGGTGGGTCAAGGATGTTGTCGTCATTACCACAAACAGCCTTTGAGGGTCTGCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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| CDS GCA 72 bp | ATGGAATACGTGCTCTTTCTCTGTCCTGGGACATACTaGACAGAGGACTCAATCTTAGCTCAGCTCCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: MEYVLFLCPGTY*TEDSILAQLLG Trigger: CCCAAGGAGCTGAGCTAAGATTGAGTCCTCTGTGCAGTATGTCCCAGGACAGAGAAAGAGCACGTATTCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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| CDS GCA 72 bp | TTGACCCACCTGCTGCCCTGTCATGACAGGGAGGGCTaGAGCACAAGTTTATTAATAGATACCTCATCATCT | + |
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Preference number: 6 (lower is better) Translates to: LTHLLPCHDREG*STSLLIDTSSS Trigger: AGATGATGAGGTATCTATTAATAAACTTGTGCTGCAGCCCTCCCTGTCATGACAGGGCAGCAGGTGGGTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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| CDS GCA 72 bp | GAAAATGATCTAAGTGAACCAACGGCATGGAATACGTaGTCTTTCTCTGTCCTGGGACATACTGCACAGAGG | + |
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Preference number: 6 (lower is better) Translates to: ENDLSEPTAWNT*SFSVLGHTAQR Trigger: CCTCTGTGCAGTATGTCCCAGGACAGAGAAAGAGCACGTATTCCATGCCGTTGGTTCACTTAGATCATTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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| CDS CCA 72 bp | ATACTGCACAGAGGACTCAATCTTAGCTCAGCTCCTTaGGCCAGCATGACCTTAAACAAGTGGCTCAATATC | + |
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Preference number: 6 (lower is better) Translates to: ILHRGLNLSSAP*ASMTLNKWLNI Trigger: GATATTGAGCCACTTGTTTAAGGTCATGCTGGCCCAAGGAGCTGAGCTAAGATTGAGTCCTCTGTGCAGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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| CDS CCA 72 bp | ATAACTGCTGAAAATGATCTAAGTGAACCAACGGCATaGAATACGTGCTCTTTCTCTGTCCTGGGACATACT | + |
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Preference number: 6 (lower is better) Translates to: ITAENDLSEPTA*NTCSFSVLGHT Trigger: AGTATGTCCCAGGACAGAGAAAGAGCACGTATTCCATGCCGTTGGTTCACTTAGATCATTTTCAGCAGTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428083.1 |
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