RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RHBDD1 (Homo sapiens)

Ensembl gene IDs: ENSG00000144468

Ensembl transcript IDs: ENST00000341329.7, ENST00000392062.7, ENST00000409053.1, ENST00000423616.1, ENST00000424132.1, ENST00000436481.1, ENST00000437454.5, ENST00000443477.5, ENST00000448992.5, ENST00000450679.2, ENST00000473218.5, ENST00000491490.5, ENST00000493526.1, ENST00000539613.5

Found 390 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGGCCAAGGCAGCCACATCCTGTTCCTGGACAGCCACAGTGGCAATaGGCCAGGAGGACGCGGGGATGGCTCCACACCCGCTGCCAAGTC +
Preference number: 1 (lower is better)
Translates to: RPRQPHPVPGQPQWQ*ARRTRGWLHTRCQV
Trigger: GACTTGGCAGCGGGTGTGGAGCCATCCCCGCGTCCTCCTGGCGCATTGCCACTGTGGCTGTCCAGGAACAGGATGTGGCTGCCTTGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 90 bp AACATTCGGCCAAGGCAGCCACATCCTGTTCCTGGACAGCCACAGTaGCAATGCGCCAGGAGGACGCGGGGATGGCTCCACACCCGCTGC +
Preference number: 1 (lower is better)
Translates to: NIRPRQPHPVPGQPQ*QCARRTRGWLHTRC
Trigger: GCAGCGGGTGTGGAGCCATCCCCGCGTCCTCCTGGCGCATTGCCACTGTGGCTGTCCAGGAACAGGATGTGGCTGCCTTGGCCGAATGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 90 bp GGGAGAGTAGGACAACATTCGGCCAAGGCAGCCACATCCTGTTCCTaGACAGCCACAGTGGCAATGCGCCAGGAGGACGCGGGGATGGCT +
Preference number: 1 (lower is better)
Translates to: GRVGQHSAKAATSCS*TATVAMRQEDAGMA
Trigger: AGCCATCCCCGCGTCCTCCTGGCGCATTGCCACTGTGGCTGTCCAGGAACAGGATGTGGCTGCCTTGGCCGAATGTTGTCCTACTCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 90 bp AACAAGGAGGCCAGGTCTGCCAGCTACCCCATTCTCGCCCTGCCTTaGAGTGCAATTTCCAGGGTAGGGGGAGGTGGTCTTTCTCATCCC +
Preference number: 1 (lower is better)
Translates to: NKEARSASYPILALP*SAISRVGGGGLSHP
Trigger: GGGATGAGAAAGACCACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCTGGCAGACCTGGCCTCCTTGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 90 bp GTGAAGGTCACAGTCTTCAAAAGCAGACCGAGGCAGAGGCATCGCTaGGTCAGCAGTGAGAGATGGGAGCGTGGAAACTGGTCTCTTCAT +
Preference number: 1 (lower is better)
Translates to: VKVTVFKSRPRQRHR*VSSERWERGNWSLH
Trigger: ATGAAGAGACCAGTTTCCACGCTCCCATCTCTCACTGCTGACTCAGCGATGCCTCTGCCTCGGTCTGCTTTTGAAGACTGTGACCTTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 90 bp AGGAACACTCACAGCCTGAGCAGTGAGACTAGTTACCAGCCTCTGTaGTGGATAAATGGGGCTGAGGTCCAAAGGCTGGTTGAAGCCCAC +
Preference number: 1 (lower is better)
Translates to: RNTHSLSSETSYQPL*WINGAEVQRLVEAH
Trigger: GTGGGCTTCAACCAGCCTTTGGACCTCAGCCCCATTTATCCATCACAGAGGCTGGTAACTAGTCTCACTGCTCAGGCTGTGAGTGTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 90 bp AATGAGGGACTAATCTTCCCGACTGGTGTAAGTAAAACCTCCTGGTaGAGGTCACAGTCTTCAAAAGCAGACCGAGGCAGAGGCATCGCT +
Preference number: 1 (lower is better)
Translates to: NEGLIFPTGVSKTSW*RSQSSKADRGRGIA
Trigger: AGCGATGCCTCTGCCTCGGTCTGCTTTTGAAGACTGTGACCTTCACCAGGAGGTTTTACTTACACCAGTCGGGAAGATTAGTCCCTCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 90 bp TGTAGATGTGGTTGTGTCTGTTACAGGATTCAGATGGGGGCTGGATaGGGAGGATCTGAATGGGCCAAGAGAGAGGAAAGAGCTGTTCCA +
Preference number: 1 (lower is better)
Translates to: CRCGCVCYRIQMGAG*GGSEWAKREERAVP
Trigger: TGGAACAGCTCTTTCCTCTCTCTTGGCCCATTCAGATCCTCCTCATCCAGCCCCCATCTGAATCCTGTAACAGACACAACCACATCTACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 90 bp CCGATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTaGTACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACAC +
Preference number: 1 (lower is better)
Translates to: PIHQMPSLYSVCGIC*YFADALNDVLSPGH
Trigger: GTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGATCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 90 bp TGTGGAAACTGTGTAGATGTGGTTGTGTCTGTTACAGGATTCAGATaGGGGCTGGATGAGGAGGATCTGAATGGGCCAAGAGAGAGGAAA +
Preference number: 1 (lower is better)
Translates to: CGNCVDVVVSVTGFR*GLDEEDLNGPRERK
Trigger: TTTCCTCTCTCTTGGCCCATTCAGATCCTCCTCATCCAGCCCCCATCTGAATCCTGTAACAGACACAACCACATCTACACAGTTTCCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 90 bp TCATTTCCATGCAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTaGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGC +
Preference number: 1 (lower is better)
Translates to: SFPCRCQGLFQVNSD*IWTQNSMVNVLQIC
Trigger: GCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTGCATGGAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 90 bp TTTCTCATCCCTTTAGCTTGCTTACTCCCCAGGCAGCAGAACATGTaGCAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATT +
Preference number: 1 (lower is better)
Translates to: FLIPLACLLPRQQNM*QIDRQDLVLLKLVI
Trigger: AATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCAAGCTAAAGGGATGAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 90 bp TATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTATCTaGCAAGTCAAACAGAGCAAGGAAGTACTACTAGTGGACTCAAGT +
Preference number: 1 (lower is better)
Translates to: YHNFTTQNLIPCLCI*QVKQSKEVLLVDSS
Trigger: ACTTGAGTCCACTAGTAGTACTTCCTTGCTCTGTTTGACTTGTCAGATACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 90 bp CTAGTTATTTACTGCAGCAGGCAATTTAAAAGGATGGAGGAGGTCTaGACAATTATGTACAACTTTGGAATCACAGGCAATACATTCAGA +
Preference number: 1 (lower is better)
Translates to: LVIYCSRQFKRMEEV*TIMYNFGITGNTFR
Trigger: TCTGAATGTATTGCCTGTGATTCCAAAGTTGTACATAATTGTTCAGACCTCCTCCATCCTTTTAAATTGCCTGCTGCAGTAAATAACTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 90 bp GAGATGCTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTaGAGTTATGTAGAATTGAGTGAGGAGGTATTGTTAAGTATTGAA +
Preference number: 1 (lower is better)
Translates to: EMLSGIMKVNFGRLS*SYVELSEEVLLSIE
Trigger: TTCAATACTTAACAATACCTCCTCACTCAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAGCATCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTTGGCTCCACACCCGCTaGCAAGTCAAACACGGGGCA +
Preference number: 2 (lower is better)
Translates to: SYPILALPCSAISRVGGGWLHTR*QVKHGA
Trigger: TGCCCCGTGTTTGACTTGGCAGCGGGTGTGGAGCCA...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 90 bp GCAAGAACAAGGCCAGGAGAAGGCCCACTCCCCGCAAGCTGTGAGTaGACTCATAGGGGCCATGGGACTGTCCCAGGTGATGTGAGCGAT +
Preference number: 2 (lower is better)
Translates to: ARTRPGEGPLPASCE*THRGHGTVPGDVSD
Trigger: ATCGCTCACATCACCTGGGACAGTCCCATGGCCCCTATGAGTCAACTCACAGCTTGCGGGGAGTGGGCCTTCTCCTGGCCTTGTTCTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 90 bp GAACAAGGAGGCCAGGTCTGCCAGCTACCCCATTCTCGCCCTGCCTaGCAGTGCAATTTCCAGGGTAGGGGGAGGTGGTCTTTCTCATCC +
Preference number: 2 (lower is better)
Translates to: EQGGQVCQLPHSRPA*QCNFQGRGRWSFSS
Trigger: GGATGAGAAAGACCACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCTGGCAGACCTGGCCTCCTTGTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp CAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCTGTATGAGGGGCCCGAGGAGCTaGGGAGCTGAGGCGCCGGGG +
Preference number: 2 (lower is better)
Translates to: QDRSLVTDPPNAFALLCMRGPRS*GAEAPG
Trigger: CCCCGGCGCCTCAGCTCCTCAGCTCCTCGGGCCCCT...CATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTAGTGAGCCCCTATCGTaGGCCTTTGGGGTTGGAAAG +
Preference number: 2 (lower is better)
Translates to: SYPILALPCSAISRVGGGSEPLS*AFGVGK
Trigger: CTTTCCAACCCCAAAGGCTCACGATAGGGGCTCACT...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAAAGGAGGACGCGGGGATaGCTCCACACCCGCTGCCAA +
Preference number: 2 (lower is better)
Translates to: PRACFGHLARTSGWYNGQRRTRG*LHTRCQ
Trigger: TTGGCAGCGGGTGTGGAGCCATCCCCGCGTCCTCCT...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTGCCACATCCTGTTCCTaGACAGCCACAGTGGCAATG +
Preference number: 2 (lower is better)
Translates to: SYPILALPCSAISRVGGGATSCS*TATVAM
Trigger: CATTGCCACTGTGGCTGTCCAGGAACAGGATGTGGC...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCAGTAAAACCTCCTGGTaGAGGTCACAGTCTTCAAAA +
Preference number: 2 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAASKTSW*RSQSSK
Trigger: TTTTGAAGACTGTGACCTTCACCAGGAGGTTTTACT...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTGTCAGCAGTGAGAGATaGGAGCGTGGAAACTGGTCT +
Preference number: 2 (lower is better)
Translates to: SYPILALPCSAISRVGGGVSSER*ERGNWS
Trigger: AGACCAGTTTCCACGCTCCCATCTCTCACTGCTGAC...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTAGGGGCCCGAGGAGCTaGGGAGCTGAGGCGCCGGGG +
Preference number: 2 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCRGPRS*GAEAPG
Trigger: CCCCGGCGCCTCAGCTCCTCAGCTCCTCGGGCCCCT...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp CAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCTGTATGCCTGGACAGCCACAGTaGCAATGCGCCAGGAGGACG +
Preference number: 2 (lower is better)
Translates to: QDRSLVTDPPNAFALLCMPGQPQ*QCARRT
Trigger: CGTCCTCCTGGCGCATTGCCACTGTGGCTGTCCAGG...CATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTAGGCAGAGGCATCGCTaGGTCAGCAGTGAGAGATGG +
Preference number: 2 (lower is better)
Translates to: IHQMPSLYSVCGICCYFARQRHR*VSSERW
Trigger: CCATCTCTCACTGCTGACTCAGCGATGCCTCTGCCT...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTTGGGACTGTCCCAGGTaGTGTGAGCGATCTGGAGCA +
Preference number: 2 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVWDCPR*CERSGA
Trigger: TGCTCCAGATCGCTCACATCACCTGGGACAGTCCCA...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCAGCCACAGTGGCAATaGGCCAGGAGGACGCGGGGA +
Preference number: 2 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAQPQWQ*ARRTRG
Trigger: TCCCCGCGTCCTCCTGGCGCATTGCCACTGTGGCTG...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp CAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCTGTATGCCACTGGGAAGGGGCTaGGAACCTACATTGCTGGTG +
Preference number: 2 (lower is better)
Translates to: QDRSLVTDPPNAFALLCMPLGRG*EPTLLV
Trigger: CACCAGCAATGTAGGTTCCCAGCCCCTTCCCAGTGG...CATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTGGACACAAAACTCCATaGTCAATGTGCTCCAAATTT +
Preference number: 2 (lower is better)
Translates to: SYPILALPCSAISRVGGGGHKTP*SMCSKF
Trigger: AAATTTGGAGCACATTGACCATGGAGTTTTGTGTCC...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACTCGCTGAGTCAGCAGTaGGAGATGGGAGCGTGGAAA +
Preference number: 2 (lower is better)
Translates to: YFADALNDVLSPGHTSCHSLSQQ*EMGAWK
Trigger: TTTCCACGCTCCCATCTCTCACTGCTGACTCAGCGA...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTAAGGAGGACGCGGGGATaGCTCCACACCCGCTGCCAA +
Preference number: 2 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVRRTRG*LHTRCQ
Trigger: TTGGCAGCGGGTGTGGAGCCATCCCCGCGTCCTCCT...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTACCTGGACAGCCACAGTaGCAATGCGCCAGGAGGACG +
Preference number: 2 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVPGQPQ*QCARRT
Trigger: CGTCCTCCTGGCGCATTGCCACTGTGGCTGTCCAGG...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTGAGCTCAGATATTACTaGGCCAGCCAGGAGGCCAAA +
Preference number: 2 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVELRYY*ASQEAK
Trigger: TTTGGCCTCCTGGCTGGCCCAGTAATATCTGAGCTC...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTACTGTGGATTGTAACGTaGCGGGGCCCAAGGGCGTGT +
Preference number: 2 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVLWIVT*RGPRAC
Trigger: ACACGCCCTTGGGCCCCGCCACGTTACAATCCACAG...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATGGGACTGTCCCAGGTaGTGTGAGCGATCTGGAGCA +
Preference number: 2 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEWDCPR*CERSGA
Trigger: TGCTCCAGATCGCTCACATCACCTGGGACAGTCCCA...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCCTCCATCAACAGCCATaGGTATCACAATTTTACCAC +
Preference number: 2 (lower is better)
Translates to: LNLSRKTKTGNKEARSASLHQQP*VSQFYH
Trigger: GTGGTAAAATTGTGATACGCATGGCTGTTGATGGAG...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCAATGAATTAGGGGCTTaGGGAATGAGCCAAATGGGC +
Preference number: 2 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLNELGA*GMSQMG
Trigger: GCCCATTTGGCTCATTCCCCAAGCCCCTAATTCATT...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCTGGGAGCGTGGAAACTaGTCTCTTCATGGAGGAAGT +
Preference number: 2 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLWERGN*SLHGGS
Trigger: ACTTCCTCCATGAAGAGACCAGTTTCCACGCTCCCA...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAACTGAGGTCCAAAGGCTaGTTGAAGCCCACTGTTGAG +
Preference number: 2 (lower is better)
Translates to: RKELFHVKAQHRMSQDQELRSKG*LKPTVE
Trigger: CTCAACAGTGGGCTTCAACCAGCCTTTGGACCTCAG...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAACTGTCCCAGGTGATGTaGGCGATCTGGAGCAATACC +
Preference number: 2 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVELSQVM*AIWSNT
Trigger: GGTATTGCTCCAGATCGCTCACATCACCTGGGACAG...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGCCGCAAGCTGTGAGTTaGCTCATAGGGGCCATGGGA +
Preference number: 2 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRPQAVS*LIGAMG
Trigger: TCCCATGGCCCCTATGAGTCAACTCACAGCTTGCGG...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATCGCTGAGTCAGCAGTaGGAGATGGGAGCGTGGAAA +
Preference number: 2 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVESLSQQ*EMGAWK
Trigger: TTTCCACGCTCCCATCTCTCACTGCTGACTCAGCGA...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAAGCACTCCAGGCAGAATaGGGGACTAATCTTCCCGAC +
Preference number: 2 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKALQAE*GTNLPD
Trigger: GTCGGGAAGATTAGTCCCTCATTCTGCCTGGAGTGC...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp ACTTCTTCAATAAGACTTTCTATAAAGGCAGAGCAATACCAGAGCAGAGCGAAAGCACTCCAGGCAGAATaGGGGACTAATCTTCCCGAC +
Preference number: 2 (lower is better)
Translates to: TSSIRLSIKAEQYQSRAKALQAE*GTNLPD
Trigger: GTCGGGAAGATTAGTCCCTCATTCTGCCTGGAGTGC...TTTCGCTCTGCTCTGGTATTGCTCTGCCTTTATAGAAAGTCTTATTGAAGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTCCGTGTCTTTGTATCTaGCAAGTCAAACAGAGCAAG +
Preference number: 2 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVPCLCI*QVKQSK
Trigger: CTTGCTCTGTTTGACTTGTCAGATACAAAGACACGG...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGCCACTGGGAAGGGGCTaGGAACCTACATTGCTGGTG +
Preference number: 2 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELPLGRG*EPTLLV
Trigger: CACCAGCAATGTAGGTTCCCAGCCCCTTCCCAGTGG...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCGCTCTACTCTGTATGTaGCATCTGCTGCTACTTTGC +
Preference number: 2 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLALLCM*HLLLLC
Trigger: GCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGC...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCAGACAGACAATCTGTaGATTGTAACGTGGCGGGGC +
Preference number: 2 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAQTDNL*IVTWRG
Trigger: GCCCCGCCACGTTACAATCCACAGATTGTCTGTCTG...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTACTGTCCCAGGTGATGTaGGCGATCTGGAGCAATACC +
Preference number: 2 (lower is better)
Translates to: EAILTTASSSEPSKDSALLSQVM*AIWSNT
Trigger: GGTATTGCTCCAGATCGCTCACATCACCTGGGACAG...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACTCTTCATGGAGGAAGTaGCCTGTTTATGAGCAAGAA +
Preference number: 2 (lower is better)
Translates to: YFADALNDVLSPGHTSCHSSWRK*PVYEQE
Trigger: TTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGA...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTAGTAAAACCTCCTGGTaGAGGTCACAGTCTTCAAAA +
Preference number: 2 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVSKTSW*RSQSSK
Trigger: TTTTGAAGACTGTGACCTTCACCAGGAGGTTTTACT...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAGCAGCAGAGAGCCAATaGAAGGTATTTGAGATGCTG +
Preference number: 2 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEAAESQ*KVFEML
Trigger: CAGCATCTCAAATACCTTTCATTGGCTCTCTGCTGC...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 90 bp TCCATGCAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTaGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAAT +
Preference number: 2 (lower is better)
Translates to: SMQVSRPLPGKFRLD*DTKLHGQCAPNLLN
Trigger: ATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTGCATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 90 bp CTCATTTCCATGCAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATaGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTG +
Preference number: 2 (lower is better)
Translates to: LISMQVSRPLPGKFR*DLDTKLHGQCAPNL
Trigger: CAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTGCATGGAAATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTCTTAGCTCATTTCCATaGAGGTGTCAAGGCCTCTTC +
Preference number: 2 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCLSSFP*RCQGLF
Trigger: GAAGAGGCCTTGACACCTGCATGGAAATGAGCTAAG...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTAATGAATTAGGGGCTTaGGGAATGAGCCAAATGGGC +
Preference number: 2 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCNELGA*GMSQMG
Trigger: GCCCATTTGGCTCATTCCCCAAGCCCCTAATTCATT...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 90 bp TACAGAGTCATTCACAATCCATGTTCCCACGTAGAAGGCACACCTTaGTGTAGCTGTGCACAGTTAATAATAGGGGCAAGATGTGTTATA +
Preference number: 2 (lower is better)
Translates to: YRVIHNPCSHVEGTP*CSCAQLIIGARCVI
Trigger: TATAACACATCTTGCCCCTATTATTAACTGTGCACAGCTACACAAAGGTGTGCCTTCTACGTGGGAACATGGATTGTGAATGACTCTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAATCTGTATGTGGCATCTaGTGCTACTTTGCTGATGCG +
Preference number: 2 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKSVCGI*CYFADA
Trigger: CGCATCAGCAAAGTAGCAGCAGATGCCACATACAGA...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTATGGGAGCGTGGAAACTaGTCTCTTCATGGAGGAAGT +
Preference number: 2 (lower is better)
Translates to: EAILTTASSSEPSKDSALWERGN*SLHGGS
Trigger: ACTTCCTCCATGAAGAGACCAGTTTCCACGCTCCCA...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 90 bp CCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTaGTATCTGACAAGTCAAACAGAGCAAGGAAGTACTACTAGTGGA +
Preference number: 2 (lower is better)
Translates to: PCVSQFYHPKSNPVS*YLTSQTEQGSTTSG
Trigger: TCCACTAGTAGTACTTCCTTGCTCTGTTTGACTTGTCAGATACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAACAGTAAGACATCAGTaGTCTTCTGACTTTGTCCTT +
Preference number: 2 (lower is better)
Translates to: RKELFHVKAQHRMSQDQETVRHQ*SSDFVL
Trigger: AAGGACAAAGTCAGAAGATCACTGATGTCTTACTGT...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAAGTATGTGGCATCTGCTaGTACTTTGCTGATGCGTTA +
Preference number: 2 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKVCGIC*YFADAL
Trigger: TAACGCATCAGCAAAGTAGCAGCAGATGCCACATAC...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGGACCGATCCACCAAATaGCTTCGCTCTACTCTGTAT +
Preference number: 2 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELDRSTK*LRSTLY
Trigger: ATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTC...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGCTTAGCTCATTTCCATaGAGGTGTCAAGGCCTCTTC +
Preference number: 2 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELLSSFP*RCQGLF
Trigger: GAAGAGGCCTTGACACCTGCATGGAAATGAGCTAAG...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGGCTCTACTCTGTATGTaGCATCTGCTGCTACTTTGC +
Preference number: 2 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRALLCM*HLLLLC
Trigger: GCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGC...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTAAGTGGCTGGTACAATaGCCAATTAAGAGGCACTTT +
Preference number: 2 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCKWLVQ*PIKRHF
Trigger: AAAGTGCCTCTTAATTGGCCATTGTACCAGCCACTT...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCTTGTCCTTTTATTCATaGAACACAAGCACCAGGAAA +
Preference number: 2 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLLSFYS*NTSTRK
Trigger: TTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAA...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTTTTGCCTTATGCATCTaGAAGGCATATCTATTATGT +
Preference number: 2 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVFALCI*KAYLLC
Trigger: ACATAATAGATATGCCTTCCAGATGCATAAGGCAAA...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR TCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTATCTTCATGGAGGAAGTaGCCTGTTTATGAGCAAGAA +
Preference number: 2 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVSSWRK*PVYEQE
Trigger: TTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGA...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTAACAAGCACCAGGAAATaGCTTAAACGACTCAGACAG +
Preference number: 2 (lower is better)
Translates to: EAILTTASSSEPSKDSALTSTRK*LKRLRQ
Trigger: CTGTCTGAGTCGTTTAAGGCATTTCCTGGTGCTTGT...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTAAAGTGGCTGGTACAATaGCCAATTAAGAGGCACTTT +
Preference number: 2 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVKWLVQ*PIKRHF
Trigger: AAAGTGCCTCTTAATTGGCCATTGTACCAGCCACTT...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTGAAGTTACTTCTAATTaGGGTAACGGGAGTCAAACT +
Preference number: 2 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCEVTSN*GNGSQT
Trigger: AGTTTGACTCCCGTTACCCCAATTAGAAGTAACTTC...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTACAGATGTTTGCCTTATaGATCTGGAAGGCATATCTA +
Preference number: 2 (lower is better)
Translates to: EAILTTASSSEPSKDSALQMFAL*IWKAYL
Trigger: TAGATATGCCTTCCAGATGCATAAGGCAAACATCTG...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR GCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGACTCCATGGTCAATGTaGTCCAAATTTGCTGAATGT +
Preference number: 2 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELTPWSM*SKFAEC
Trigger: ACATTCAGCAAATTTGGAGCACATTGACCATGGAGT...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTTTTGCCTTATGCATCTaGAAGGCATATCTATTATGT +
Preference number: 2 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAFALCI*KAYLLC
Trigger: ACATAATAGATATGCCTTCCAGATGCATAAGGCAAA...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGGGACACAAAACTCCATaGTCAATGTGCTCCAAATTT +
Preference number: 2 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELGHKTP*SMCSKF
Trigger: AAATTTGGAGCACATTGACCATGGAGTTTTGTGTCC...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 90 bp AGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTaGCTGAATGTATCAACGGAAAAATTGATAAGACAATACCACCAA +
Preference number: 2 (lower is better)
Translates to: RLDLDTKLHGQCAPN*LNVSTEKLIRQYHQ
Trigger: TTGGTGGTATTGTCTTATCAATTTTTCCGTTGATACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGAATTCAGATTGGATTTaGACACAAAACTCCATGGTC +
Preference number: 2 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELNSDWI*TQNSMV
Trigger: GACCATGGAGTTTTGTGTCCAAATCCAATCTGAATT...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 72 bp CAGCCACATCCTGTTCCTGGACAGCCACAGTGGCAATaGGCCAGGAGGACGCGGGGATGGCTCCACACCCGC +
Preference number: 3 (lower is better)
Translates to: QPHPVPGQPQWQ*ARRTRGWLHTR
Trigger: GCGGGTGTGGAGCCATCCCCGCGTCCTCCTGGCGCATTGCCACTGTGGCTGTCCAGGAACAGGATGTGGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 72 bp CAGCCACAGTGGCAATGCGCCAGGAGGACGCGGGGATaGCTCCACACCCGCTGCCAAGTCAAACACGGGGCA +
Preference number: 3 (lower is better)
Translates to: QPQWQCARRTRG*LHTRCQVKHGA
Trigger: TGCCCCGTGTTTGACTTGGCAGCGGGTGTGGAGCCATCCCCGCGTCCTCCTGGCGCATTGCCACTGTGGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 72 bp GGACAACATTCGGCCAAGGCAGCCACATCCTGTTCCTaGACAGCCACAGTGGCAATGCGCCAGGAGGACGCG +
Preference number: 3 (lower is better)
Translates to: GQHSAKAATSCS*TATVAMRQEDA
Trigger: CGCGTCCTCCTGGCGCATTGCCACTGTGGCTGTCCAGGAACAGGATGTGGCTGCCTTGGCCGAATGTTGTCC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 72 bp GCCAGGTCTGCCAGCTACCCCATTCTCGCCCTGCCTTaGAGTGCAATTTCCAGGGTAGGGGGAGGTGGTCTT +
Preference number: 3 (lower is better)
Translates to: ARSASYPILALP*SAISRVGGGGL
Trigger: AAGACCACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCTGGCAGACCTGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 72 bp GTCTGCCAGCTACCCCATTCTCGCCCTGCCTTGCAGTaGAATTTCCAGGGTAGGGGGAGGTGGTCTTTCTCA +
Preference number: 3 (lower is better)
Translates to: VCQLPHSRPALQ*NFQGRGRWSFS
Trigger: TGAGAAAGACCACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCTGGCAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 72 bp ACAGTCTTCAAAAGCAGACCGAGGCAGAGGCATCGCTaGGTCAGCAGTGAGAGATGGGAGCGTGGAAACTGG +
Preference number: 3 (lower is better)
Translates to: TVFKSRPRQRHR*VSSERWERGNW
Trigger: CCAGTTTCCACGCTCCCATCTCTCACTGCTGACTCAGCGATGCCTCTGCCTCGGTCTGCTTTTGAAGACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTGTAGAAGGCACACCTTaGTGTAGCTGTGCACAGTTA +
Preference number: 3 (lower is better)
Translates to: SYPILALPCSAISRVGGGVEGTP*CSCAQL
Trigger: TAACTGTGCACAGCTACACAAAGGTGTGCCTTCTAC...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 72 bp GCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTaGCACTGGGAAGGGGCTGGGAACCTACATTGCTGG +
Preference number: 3 (lower is better)
Translates to: ALNDVLSPGHTS*HWEGAGNLHCW
Trigger: CCAGCAATGTAGGTTCCCAGCCCCTTCCCAGTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 72 bp AATGATGTCCTATCTCCTGGACACACAAGCTGCCACTaGGAAGGGGCTGGGAACCTACATTGCTGGTGTCAC +
Preference number: 3 (lower is better)
Translates to: NDVLSPGHTSCH*EGAGNLHCWCH
Trigger: GTGACACCAGCAATGTAGGTTCCCAGCCCCTTCCCAGTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 72 bp CACAGCCTGAGCAGTGAGACTAGTTACCAGCCTCTGTaGTGGATAAATGGGGCTGAGGTCCAAAGGCTGGTT +
Preference number: 3 (lower is better)
Translates to: HSLSSETSYQPL*WINGAEVQRLV
Trigger: AACCAGCCTTTGGACCTCAGCCCCATTTATCCATCACAGAGGCTGGTAACTAGTCTCACTGCTCAGGCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTCAATGTGCTCCAAATTaGCTGAATGTATCAACGGAA +
Preference number: 3 (lower is better)
Translates to: SYPILALPCSAISRVGGGQCAPN*LNVSTE
Trigger: TTCCGTTGATACATTCAGCAAATTTGGAGCACATTG...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTGCTGAGGCGCCGGGGTaGGGGAGAGTAGGACAACAT +
Preference number: 3 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAAEAPG*GRVGQH
Trigger: ATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGC...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCCGCAAGCTGTGAGTaGACTCATAGGGGCCATGGG +
Preference number: 3 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAPASCE*THRGHG
Trigger: CCCATGGCCCCTATGAGTCAACTCACAGCTTGCGGG...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTCCCGCAAGCTGTGAGTaGACTCATAGGGGCCATGGG +
Preference number: 3 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCPASCE*THRGHG
Trigger: CCCATGGCCCCTATGAGTCAACTCACAGCTTGCGGG...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAAGCTGAGGCGCCGGGGTaGGGGAGAGTAGGACAACAT +
Preference number: 3 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKAEAPG*GRVGQH
Trigger: ATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGC...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAACCCTATCGTGAGCCTTaGGGGTTGGAAAGGGGAGAC +
Preference number: 3 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEPYREP*GLERGD
Trigger: GTCTCCCCTTTCCAACCCCAAAGGCTCACGATAGGG...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAATCTCATCCCTTTAGCTaGCTTACTCCCCAGGCAGCA +
Preference number: 3 (lower is better)
Translates to: RKELFHVKAQHRMSQDQESHPFS*LTPQAA
Trigger: TGCTGCCTGGGGAGTAAGCAAGCTAAAGGGATGAGA...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 72 bp AGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTaGTACAATGGCCAATTAAGAGGCACTTTTATGAGG +
Preference number: 3 (lower is better)
Translates to: RACFGHLARTSG*YNGQLRGTFMR
Trigger: CCTCATAAAAGTGCCTCTTAATTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 72 bp CACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTaGTGCTACTTTGCTGATGCGTTAAATGATGTCCTA +
Preference number: 3 (lower is better)
Translates to: HQMPSLYSVCGI*CYFADALNDVL
Trigger: TAGGACATCATTTAACGCATCAGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAGCCCAAGGGCGTGTTTaGGACATTTGGCTAGGACAA +
Preference number: 3 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEAQGRV*DIWLGQ
Trigger: TTGTCCTAGCCAAATGTCCAAAACACGCCCTTGGGC...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 72 bp CCTTTAGCTTGCTTACTCCCCAGGCAGCAGAACATGTaGCAAATAGATAGACAGGATCTAGTTCTACTCAAA +
Preference number: 3 (lower is better)
Translates to: PLACLLPRQQNM*QIDRQDLVLLK
Trigger: TTTGAGTAGAACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCAAGCTAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGGCGTGTTTTGGACATTaGGCTAGGACAAGTGGCTGG +
Preference number: 3 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELACFGH*ARTSGW
Trigger: CCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGC...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGGCCCAAGGGCGTGTTTaGGACATTTGGCTAGGACAA +
Preference number: 3 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELAQGRV*DIWLGQ
Trigger: TTGTCCTAGCCAAATGTCCAAAACACGCCCTTGGGC...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTAAATTCAGATTGGATTaGGACACAAAACTCCATGGT +
Preference number: 3 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVKFRLD*DTKLHG
Trigger: ACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTT...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAGTAGAAGGCACACCTTaGTGTAGCTGTGCACAGTTA +
Preference number: 3 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEVEGTP*CSCAQL
Trigger: TAACTGTGCACAGCTACACAAAGGTGTGCCTTCTAC...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 72 bp TTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATaGCTTAAACGACTCAGACAGACAATCTGTGGATTG +
Preference number: 3 (lower is better)
Translates to: LSFYSWNTSTRK*LKRLRQTICGL
Trigger: CAATCCACAGATTGTCTGTCTGAGTCGTTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CCA 72 bp TGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTaGACACAAAACTCCATGGTCAATGTGCTCCAAATT +
Preference number: 3 (lower is better)
Translates to: CQGLFQVNSDWI*TQNSMVNVLQI
Trigger: AATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTTCTTTCCAGATGTTaGCCTTATGCATCTGGAAGG +
Preference number: 3 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEFLSRC*PYASGR
Trigger: CCTTCCAGATGCATAAGGCAAACATCTGGAAAGAAA...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTATTTCTTTCCAGATGTTaGCCTTATGCATCTGGAAGG +
Preference number: 3 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVFLSRC*PYASGR
Trigger: CCTTCCAGATGCATAAGGCAAACATCTGGAAAGAAA...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAAAATTCAGATTGGATTaGGACACAAAACTCCATGGT +
Preference number: 3 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEKFRLD*DTKLHG
Trigger: ACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTT...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 72 bp TTTACCACCCAAAATCTAATCCCGTGTCTTTGTATCTaGCAAGTCAAACAGAGCAAGGAAGTACTACTAGTG +
Preference number: 3 (lower is better)
Translates to: FTTQNLIPCLCI*QVKQSKEVLLV
Trigger: CACTAGTAGTACTTCCTTGCTCTGTTTGACTTGTCAGATACAAAGACACGGGATTAGATTTTGGGTGGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 72 bp TACTGCAGCAGGCAATTTAAAAGGATGGAGGAGGTCTaGACAATTATGTACAACTTTGGAATCACAGGCAAT +
Preference number: 3 (lower is better)
Translates to: YCSRQFKRMEEV*TIMYNFGITGN
Trigger: ATTGCCTGTGATTCCAAAGTTGTACATAATTGTTCAGACCTCCTCCATCCTTTTAAATTGCCTGCTGCAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGCCAGGTAAATTCAGATaGGATTTGGACACAAAACTC +
Preference number: 3 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRPGKFR*DLDTKL
Trigger: GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGG...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTATCTAATCCCGTGTCTTaGTATCTGACAAGTCAAACA +
Preference number: 3 (lower is better)
Translates to: EAILTTASSSEPSKDSALSNPVS*YLTSQT
Trigger: TGTTTGACTTGTCAGATACAAAGACACGGGATTAGA...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGTCCAAACATAAGCACTaGTTACAGGCAAGTCCATTA +
Preference number: 3 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRSKHKH*LQASPL
Trigger: TAATGGACTTGCCTGTAACAAGTGCTTATGTTTGGA...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGCTTGCTCACTTGCTTTaGTCTTTCTCAATCCAATTC +
Preference number: 3 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELLAHLL*SFSIQF
Trigger: GAATTGGATTGAGAAAGACAAAAGCAAGTGAGCAAG...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR-3UTR CAA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGCTTGCTCACTTGCTTTaGTCTTTCTCAATCCAATTC +
Preference number: 3 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRLAHLL*SFSIQF
Trigger: GAATTGGATTGAGAAAGACAAAAGCAAGTGAGCAAG...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR TCA 72 bp AATATCTCTGTTGACAGTAAGACATCAGTGATCTTCTaGCTTTGTCCTTTTATTCATGGAACACAAGCACCA +
Preference number: 3 (lower is better)
Translates to: NISVDSKTSVIF*LCPFIHGTQAP
Trigger: TGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAGATCACTGATGTCTTACTGTCAACAGAGATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR GCA 72 bp CAGATTGGATTTGGACACAAAACTCCATGGTCAATGTaGTCCAAATTTGCTGAATGTATCAACGGAAAAATT +
Preference number: 3 (lower is better)
Translates to: QIGFGHKTPWSM*SKFAECINGKI
Trigger: AATTTTTCCGTTGATACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCCAGCCACAGTGGCAATaGGCCAGGAGGACGCGGGGA +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAAQPQWQ*ARRTRG
Trigger: TCCCCGCGTCCTCCTGGCGCATTGCCACTGTGGCTG...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCTGGCTCCACACCCGCTaGCAAGTCAAACACGGGGCA +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAAWLHTR*QVKHGA
Trigger: TGCCCCGTGTTTGACTTGGCAGCGGGTGTGGAGCCA...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCCCGCAAGCTGTGAGTTaGCTCATAGGGGCCATGGGA +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAAPQAVS*LIGAMG
Trigger: TCCCATGGCCCCTATGAGTCAACTCACAGCTTGCGG...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 72 bp GGCCAGGTCTGCCAGCTACCCCATTCTCGCCCTGCCTaGCAGTGCAATTTCCAGGGTAGGGGGAGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: GQVCQLPHSRPA*QCNFQGRGRWS
Trigger: AGACCACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCTGGCAGACCTGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCAGTTACCAGCCTCTGTaGTGGATAAATGGGGCTGAG +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAASYQPL*WINGAE
Trigger: CTCAGCCCCATTTATCCATCACAGAGGCTGGTAACT...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCCCTCTTGATCTCCGTTaGATGGCCAGATATCAGGGA +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAAPLDLR*MARYQG
Trigger: TCCCTGATATCTGGCCATGCAACGGAGATCAAGAGG...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCAGTATTTATCCCTCTTaGTCTCCGTTGCATGGCCAG +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAASIYPS*SPLHGQ
Trigger: CTGGCCATGCAACGGAGATCAAGAGGGATAAATACT...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCGAAACAGCTCAGCAATaGGAAAACGTACTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAAETAQQ*ENVLRW
Trigger: CCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTC...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTCCACTGGGAAGGGGCTaGGAACCTACATTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGPLGRG*EPTLLV
Trigger: CACCAGCAATGTAGGTTCCCAGCCCCTTCCCAGTGG...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTGGTCCAAAGGCTGGTTaGAGCCCACTGTTGAGGCTA +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGGPKAG*SPLLRL
Trigger: TAGCCTCAACAGTGGGCTTCAACCAGCCTTTGGACC...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCAGGCAGCAGAACATGTaGCAAATAGATAGACAGGAT +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAARQQNM*QIDRQD
Trigger: ATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCT...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCACTCCATGGTCAATGTaGTCCAAATTTGCTGAATGT +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAATPWSM*SKFAEC
Trigger: ACATTCAGCAAATTTGGAGCACATTGACCATGGAGT...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTGTAGTATTGCCGTCCTaGGTAACCAACACTGGAGGA +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGVVLPS*VTNTGG
Trigger: TCCTCCAGTGTTGGTTACCCAGGACGGCAATACTAC...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTTGGGAGCGTGGAAACTaGTCTCTTCATGGAGGAAGT +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGWERGN*SLHGGS
Trigger: ACTTCCTCCATGAAGAGACCAGTTTCCACGCTCCCA...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCGGACACAAAACTCCATaGTCAATGTGCTCCAAATTT +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAAGHKTP*SMCSKF
Trigger: AAATTTGGAGCACATTGACCATGGAGTTTTGTGTCC...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCCCAATTCCAGTTTGTTaGCATAACTTTAGGGATTCC +
Preference number: 4 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAAPIPVC*HNFRDS
Trigger: GGAATCCCTAAAGTTATGCCAACAAACTGGAATTGG...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTAGTATTTATCCCTCTTaGTCTCCGTTGCATGGCCAG +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGSIYPS*SPLHGQ
Trigger: CTGGCCATGCAACGGAGATCAAGAGGGATAAATACT...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAAGGGGCCCGAGGAGCTaGGGAGCTGAGGCGCCGGGG +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVERGPRS*GAEAPG
Trigger: CCCCGGCGCCTCAGCTCCTCAGCTCCTCGGGCCCCT...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTGCAGCAGAGAGCCAATaGAAGGTATTTGAGATGCTG +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGAAESQ*KVFEML
Trigger: CAGCATCTCAAATACCTTTCATTGGCTCTCTGCTGC...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTTCTCTACGACCCGCCTaGGTCCCCACGTCTTCGCGC +
Preference number: 4 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVSLRPA*VPTSSR
Trigger: GCGCGAAGACGTGGGGACGCAGGCGGGTCGTAGAGA...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341329.7
CDS-3UTR GCA 90 bp CAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCTGTATGCAGCCACAGTGGCAATaGGCCAGGAGGACGCGGGGA +
Preference number: 4 (lower is better)
Translates to: QDRSLVTDPPNAFALLCMQPQWQ*ARRTRG
Trigger: TCCCCGCGTCCTCCTGGCGCATTGCCACTGTGGCTG...CATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 72 bp GTAACGTGGCGGGGCCCAAGGGCGTGTTTTGGACATTaGGCTAGGACAAGTGGCTGGTACAATGGCCAATTA +
Preference number: 4 (lower is better)
Translates to: VTWRGPRACFGH*ARTSGWYNGQL
Trigger: TAATTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGGGCCCCGCCACGTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCAGGCAGAGGCATCGCTaGGTCAGCAGTGAGAGATGG +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASRQRHR*VSSERW
Trigger: CCATCTCTCACTGCTGACTCAGCGATGCCTCTGCCT...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAAAGTGAGCCCCTATCGTaGGCCTTTGGGGTTGGAAAG +
Preference number: 4 (lower is better)
Translates to: PRACFGHLARTSGWYNGQSEPLS*AFGVGK
Trigger: CTTTCCAACCCCAAAGGCTCACGATAGGGGCTCACT...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTGAAACAGATGGTCCCTaGCCTCATGAAGCTTACAAT +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGETDGP*PHEAYN
Trigger: ATTGTAAGCTTCATGAGGGCAGGGACCATCTGTTTC...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCT +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGSVSGI*GDIQTA
Trigger: AGCCGTCTGTATATCTCCCCAGATACCTGAAACTGA...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCAGGAGGACGCGGGGATaGCTCCACACCCGCTGCCAA +
Preference number: 4 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLRRTRG*LHTRCQ
Trigger: TTGGCAGCGGGTGTGGAGCCATCCCCGCGTCCTCCT...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCGCACTCCAGGCAGAATaGGGGACTAATCTTCCCGAC +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASALQAE*GTNLPD
Trigger: GTCGGGAAGATTAGTCCCTCATTCTGCCTGGAGTGC...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCTCCACACCCGCTaGCAAGTCAAACACGGGGCA +
Preference number: 4 (lower is better)
Translates to: QDRSLVTDPPNAFALLCMWLHTR*QVKHGA
Trigger: TGCCCCGTGTTTGACTTGGCAGCGGGTGTGGAGCCA...CATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTCGCCCTGCCTTGCAGTaGAATTTCCAGGGTAGGGGG +
Preference number: 4 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVRPALQ*NFQGRG
Trigger: CCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCG...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACCAAGGAGGCCAGGTCTaGCAGCTACCCCATTCTCGC +
Preference number: 4 (lower is better)
Translates to: YFADALNDVLSPGHTSCHQGGQV*QLPHSR
Trigger: GCGAGAATGGGGTAGCTGGCAGACCTGGCCTCCTTG...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAACTGGGTAACCAACACTaGAGGAAAAACCGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: PRACFGHLARTSGWYNGQLGNQH*RKNRLH
Trigger: GTGCAGGCGGTTTTTCCTCCAGTGTTGGTTACCCAG...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACCTGTGGATTGTAACGTaGCGGGGCCCAAGGGCGTGT +
Preference number: 4 (lower is better)
Translates to: YFADALNDVLSPGHTSCHLWIVT*RGPRAC
Trigger: ACACGCCCTTGGGCCCCGCCACGTTACAATCCACAG...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTCAGGTGGAATATTGTTaGTCCCAACATGGAAGATTT +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGQVEYC*SQHGRF
Trigger: AAATCTTCCATGTTGGGATCAACAATATTCCACCTG...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACTGGGACTGTCCCAGGTaGTGTGAGCGATCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: YFADALNDVLSPGHTSCHWDCPR*CERSGA
Trigger: TGCTCCAGATCGCTCACATCACCTGGGACAGTCCCA...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTACAGTAAGACATCAGTaGTCTTCTGACTTTGTCCTT +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGTVRHQ*SSDFVL
Trigger: AAGGACAAAGTCAGAAGATCACTGATGTCTTACTGT...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCGGAACACTCACAGCCTaGGCAGTGAGACTAGTTACC +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASGTLTA*AVRLVT
Trigger: GGTAACTAGTCTCACTGCTCAGGCTGTGAGTGTTCC...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTCTCGGTCCCAGAGGCTaGCTTGTAATGCTCTCTCGA +
Preference number: 4 (lower is better)
Translates to: IHQMPSLYSVCGICCYFALGPRG*LVMLSR
Trigger: TCGAGAGAGCATTACAAGCCAGCCTCTGGGACCGAG...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCCAGACAGACAATCTGTaGATTGTAACGTGGCGGGGC +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASQTDNL*IVTWRG
Trigger: GCCCCGCCACGTTACAATCCACAGATTGTCTGTCTG...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCCTGTCCCAGGTGATGTaGGCGATCTGGAGCAATACC +
Preference number: 4 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLLSQVM*AIWSNT
Trigger: GGTATTGCTCCAGATCGCTCACATCACCTGGGACAG...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTTCGCTGAGTCAGCAGTaGGAGATGGGAGCGTGGAAA +
Preference number: 4 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVSLSQQ*EMGAWK
Trigger: TTTCCACGCTCCCATCTCTCACTGCTGACTCAGCGA...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTAGTATTTATTGGTTCTaGCATTCCAGACAACGTACT +
Preference number: 4 (lower is better)
Translates to: SYPILALPCSAISRVGGGSIYWF*HSRQRT
Trigger: AGTACGTTGTCTGGAATGTCAGAACCAATAAATACT...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTGTCTTCGCGCGCACGTaGGTCATCACGCACGTTCCC +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCVFART*VITHVP
Trigger: GGGAACGTGCGTGATGACGCACGTGCGCGCGAAGAC...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341329.7
CDS-3UTR CCA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTGAGCTCAGATATTACTaGGCCAGCCAGGAGGCCAAA +
Preference number: 4 (lower is better)
Translates to: IHQMPSLYSVCGICCYFAELRYY*ASQEAK
Trigger: TTTGGCCTCCTGGCTGGCCCAGTAATATCTGAGCTC...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCTGTCCCAGGTGATGTaGGCGATCTGGAGCAATACC +
Preference number: 4 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLLSQVM*AIWSNT
Trigger: GGTATTGCTCCAGATCGCTCACATCACCTGGGACAG...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAACCGTGTCTTTGTATCTaGCAAGTCAAACAGAGCAAG +
Preference number: 4 (lower is better)
Translates to: PRACFGHLARTSGWYNGQPCLCI*QVKQSK
Trigger: CTTGCTCTGTTTGACTTGTCAGATACAAAGACACGG...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTCCTCTTGATCTCCGTTaGATGGCCAGATATCAGGGA +
Preference number: 4 (lower is better)
Translates to: IHQMPSLYSVCGICCYFAPLDLR*MARYQG
Trigger: TCCCTGATATCTGGCCATGCAACGGAGATCAAGAGG...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAAGTCATAGTTCCTGGGTaGTTCTTCATAGTGATCTGG +
Preference number: 4 (lower is better)
Translates to: PRACFGHLARTSGWYNGQVIVPG*FFIVIW
Trigger: CCAGATCACTATGAAGAAGCACCCAGGAACTATGAC...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCAAACCCGTAGGGTGGTaGGCTATTTCTGGTATTTCC +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASKPVGW*AISGIS
Trigger: GGAAATACCAGAAATAGCCCACCACCCTACGGGTTT...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAAATGAAACCCGTAGGGTaGTGGGCTATTTCTGGTATT +
Preference number: 4 (lower is better)
Translates to: PRACFGHLARTSGWYNGQMKPVG*WAISGI
Trigger: AATACCAGAAATAGCCCACCACCCTACGGGTTTCAT...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTAAGGAGGACGCGGGGATaGCTCCACACCCGCTGCCAA +
Preference number: 4 (lower is better)
Translates to: EAILTTASSSEPSKDSALRRTRG*LHTRCQ
Trigger: TTGGCAGCGGGTGTGGAGCCATCCCCGCGTCCTCCT...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACCCTCATTTCTTCTGGTaGGAGATGAAACCCGTAGGG +
Preference number: 4 (lower is better)
Translates to: YFADALNDVLSPGHTSCHPHFFW*EMKPVG
Trigger: CCCTACGGGTTTCATCTCTCACCAGAAGAAATGAGG...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAAGTGAGCCCCTATCGTaGGCCTTTGGGGTTGGAAAG +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQESEPLS*AFGVGK
Trigger: CTTTCCAACCCCAAAGGCTCACGATAGGGGCTCACT...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCGGAACACTCACAGCCTaGGCAGTGAGACTAGTTACC +
Preference number: 4 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLGTLTA*AVRLVT
Trigger: GGTAACTAGTCTCACTGCTCAGGCTGTGAGTGTTCC...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAATTCTTCACTCAGTCCTaGTGTGTACGTGTCATAGTT +
Preference number: 4 (lower is better)
Translates to: PRACFGHLARTSGWYNGQFFTQS*CVRVIV
Trigger: AACTATGACACGTACACAGCAGGACTGAGTGAAGAA...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCACAAGCACCAGGAAATaGCTTAAACGACTCAGACAG +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASTSTRK*LKRLRQ
Trigger: CTGTCTGAGTCGTTTAAGGCATTTCCTGGTGCTTGT...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAACGCCCTGCCTTGCAGTaGAATTTCCAGGGTAGGGGG +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVERPALQ*NFQGRG
Trigger: CCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCG...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCT +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASSVSGI*GDIQTA
Trigger: AGCCGTCTGTATATCTCCCCAGATACCTGAAACTGA...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp TCTCTTCATGGAGGAAGTGACCTGTTTATGAGCAAGAACAAGGCCAGGAGAAGGGCAGGAGCTATACAGTaGCTTCTGAGGGTTCAAGAA +
Preference number: 4 (lower is better)
Translates to: SLHGGSDLFMSKNKARRRAGAIQ*LLRVQE
Trigger: TTCTTGAACCCTCAGAAGCCACTGTATAGCTCCTGC...CCTTCTCCTGGCCTTGTTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCATGAAACCCGTAGGGTaGTGGGCTATTTCTGGTATT +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASMKPVG*WAISGI
Trigger: AATACCAGAAATAGCCCACCACCCTACGGGTTTCAT...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp TCTCTTCATGGAGGAAGTGACCTGTTTATGAGCAAGAACAAGGCCAGGAGAAGGAATGAATTAGGGGCTTaGGGAATGAGCCAAATGGGC +
Preference number: 4 (lower is better)
Translates to: SLHGGSDLFMSKNKARRRNELGA*GMSQMG
Trigger: GCCCATTTGGCTCATTCCCCAAGCCCCTAATTCATT...CCTTCTCCTGGCCTTGTTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGCCTGGACAGCCACAGTaGCAATGCGCCAGGAGGACG +
Preference number: 4 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRPGQPQ*QCARRT
Trigger: CGTCCTCCTGGCGCATTGCCACTGTGGCTGTCCAGG...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAACTGTGGATTGTAACGTaGCGGGGCCCAAGGGCGTGT +
Preference number: 4 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKLWIVT*RGPRAC
Trigger: ACACGCCCTTGGGCCCCGCCACGTTACAATCCACAG...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCTGTATGCTATACAGTGGCTTCTaGGGGTTCAAGAAGAACCAG +
Preference number: 4 (lower is better)
Translates to: QDRSLVTDPPNAFALLCMLYSGF*GFKKNQ
Trigger: CTGGTTCTTCTTGAACCCTCAGAAGCCACTGTATAG...CATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCCAATCATCAGCATGGTaGAGGGGAGAGAGCAGTAAA +
Preference number: 4 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLQSSAW*RGESSK
Trigger: TTTACTGCTCTCTCCCCTTCACCATGCTGATGATTG...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TCTCTTCATGGAGGAAGTGACCTGTTTATGAGCAAGAACAAGGCCAGGAGAAGGAGCAAACAAAACTCCTaGGAAACCTACAGCACAGCT +
Preference number: 4 (lower is better)
Translates to: SLHGGSDLFMSKNKARRRSKQNS*ETYSTA
Trigger: AGCTGTGCTGTAGGTTTCTCAGGAGTTTTGTTTGCT...CCTTCTCCTGGCCTTGTTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCCTCATTTCTTCTGGTaGGAGATGAAACCCGTAGGG +
Preference number: 4 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLPHFFW*EMKPVG
Trigger: CCCTACGGGTTTCATCTCTCACCAGAAGAAATGAGG...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAACCGCAAGCTGTGAGTTaGCTCATAGGGGCCATGGGA +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEPQAVS*LIGAMG
Trigger: TCCCATGGCCCCTATGAGTCAACTCACAGCTTGCGG...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTTCGCTGAGTCAGCAGTaGGAGATGGGAGCGTGGAAA +
Preference number: 4 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCASLSQQ*EMGAWK
Trigger: TTTCCACGCTCCCATCTCTCACTGCTGACTCAGCGA...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAAAGGCAGAGGCATCGCTaGGTCAGCAGTGAGAGATGG +
Preference number: 4 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKRQRHR*VSSERW
Trigger: CCATCTCTCACTGCTGACTCAGCGATGCCTCTGCCT...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TCTCTTCATGGAGGAAGTGACCTGTTTATGAGCAAGAACAAGGCCAGGAGAAGGTCGGCAACAGCAAATTaGAAGAGCAGGTATACCACT +
Preference number: 4 (lower is better)
Translates to: SLHGGSDLFMSKNKARRRSATAN*KSRYTT
Trigger: AGTGGTATACCTGCTCTTGCAATTTGCTGTTGCCGA...CCTTCTCCTGGCCTTGTTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACGACCGATCCACCAAATaGCTTCGCTCTACTCTGTAT +
Preference number: 4 (lower is better)
Translates to: YFADALNDVLSPGHTSCHDRSTK*LRSTLY
Trigger: ATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTC...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCAACTTAGGGAATGACTaGAATGATTCATGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASNLGND*NDSWEG
Trigger: CCCTTCCCATGAATCATTGCAGTCATTCCCTAAGTT...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTTTGATCTCCGTTGCATaGCCAGATATCAGGGAAACA +
Preference number: 4 (lower is better)
Translates to: IHQMPSLYSVCGICCYFALISVA*PDIRET
Trigger: TGTTTCCCTGATATCTGGCCATGCAACGGAGATCAA...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTCTCGGTCCCAGAGGCTaGCTTGTAATGCTCTCTCGA +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCLGPRG*LVMLSR
Trigger: TCGAGAGAGCATTACAAGCCAGCCTCTGGGACCGAG...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCTGTATGAATGAATTAGGGGCTTaGGGAATGAGCCAAATGGGC +
Preference number: 4 (lower is better)
Translates to: QDRSLVTDPPNAFALLCMNELGA*GMSQMG
Trigger: GCCCATTTGGCTCATTCCCCAAGCCCCTAATTCATT...CATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCCCTGGTGAGAATAAATaGATAGCCACAAGTTCGACC +
Preference number: 4 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLPGENK*IATSST
Trigger: GGTCGAACTTGTGGCTATTCATTTATTCTCACCAGG...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGTGGGACTGTCCCAGGTaGTGTGAGCGATCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELWDCPR*CERSGA
Trigger: TGCTCCAGATCGCTCACATCACCTGGGACAGTCCCA...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCAAAGGTCGCTTAAGTTaGCTGACCACACCAAACTGT +
Preference number: 4 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLKGRLS*LTTPNC
Trigger: ACAGTTTGGTGTGGTCAGTCAACTTAAGCGACCTTT...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCATAATTGAGATACTGTaGCTCTCTAAGCTGAGAGTC +
Preference number: 4 (lower is better)
Translates to: LNLSRKTKTGNKEARSASIIEIL*LSKLRV
Trigger: GACTCTCAGCTTAGAGAGTCACAGTATCTCAATTAT...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp ACTTCTTCAATAAGACTTTCTATAAAGGCAGAGCAATACCAGAGCAGAGCGAAAGGTCCAAAGGCTGGTTaGAGCCCACTGTTGAGGCTA +
Preference number: 4 (lower is better)
Translates to: TSSIRLSIKAEQYQSRAKGPKAG*SPLLRL
Trigger: TAGCCTCAACAGTGGGCTTCAACCAGCCTTTGGACC...TTTCGCTCTGCTCTGGTATTGCTCTGCCTTTATAGAAAGTCTTATTGAAGAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAAGTTACCAGCCTCTGTaGTGGATAAATGGGGCTGAG +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQESYQPL*WINGAE
Trigger: CTCAGCCCCATTTATCCATCACAGAGGCTGGTAACT...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCTGTATGCATAGTGATCTGGCCTaGCATGCGGATAATAATCCT +
Preference number: 4 (lower is better)
Translates to: QDRSLVTDPPNAFALLCMHSDLA*HADNNP
Trigger: AGGATTATTATCCGCATGGCAGGCCAGATCACTATG...CATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TCTCTTCATGGAGGAAGTGACCTGTTTATGAGCAAGAACAAGGCCAGGAGAAGGTTCTTCACTCAGTCCTaGTGTGTACGTGTCATAGTT +
Preference number: 4 (lower is better)
Translates to: SLHGGSDLFMSKNKARRRFFTQS*CVRVIV
Trigger: AACTATGACACGTACACAGCAGGACTGAGTGAAGAA...CCTTCTCCTGGCCTTGTTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCTCTGTATGTGGCATCTaGTGCTACTTTGCTGATGCG +
Preference number: 4 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLSVCGI*CYFADA
Trigger: CGCATCAGCAAAGTAGCAGCAGATGCCACATACAGA...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACACAAGCACCAGGAAATaGCTTAAACGACTCAGACAG +
Preference number: 4 (lower is better)
Translates to: YFADALNDVLSPGHTSCHTSTRK*LKRLRQ
Trigger: CTGTCTGAGTCGTTTAAGGCATTTCCTGGTGCTTGT...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCTGGGTAACCAACACTaGAGGAAAAACCGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCALGNQH*RKNRLH
Trigger: GTGCAGGCGGTTTTTCCTCCAGTGTTGGTTACCCAG...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAGTAGTATTGCCGTCCTaGGTAACCAACACTGGAGGA +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEVVLPS*VTNTGG
Trigger: TCCTCCAGTGTTGGTTACCCAGGACGGCAATACTAC...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTAAGTGGCTGGTACAATaGCCAATTAAGAGGCACTTT +
Preference number: 4 (lower is better)
Translates to: IHQMPSLYSVCGICCYFAKWLVQ*PIKRHF
Trigger: AAAGTGCCTCTTAATTGGCCATTGTACCAGCCACTT...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAAAATTCAGATTGGATTTaGACACAAAACTCCATGGTC +
Preference number: 4 (lower is better)
Translates to: PRACFGHLARTSGWYNGQNSDWI*TQNSMV
Trigger: GACCATGGAGTTTTGTGTCCAAATCCAATCTGAATT...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAAGGCAATTTAAAAGGATaGAGGAGGTCTGAACAATTA +
Preference number: 4 (lower is better)
Translates to: PRACFGHLARTSGWYNGQGNLKG*RRSEQL
Trigger: TAATTGTTCAGACCTCCTCCATCCTTTTAAATTGCC...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTCTGAGGTCCAAAGGCTaGTTGAAGCCCACTGTTGAG +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCLRSKG*LKPTVE
Trigger: CTCAACAGTGGGCTTCAACCAGCCTTTGGACCTCAG...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAGTTACAGGATTCAGATaGGGGCTGGATGAGGAGGAT +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEVTGFR*GLDEED
Trigger: ATCCTCCTCATCCAGCCCCCATCTGAATCCTGTAAC...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAATTTCTCCCCCTACAATaGACCCGCTCTCTACGACCC +
Preference number: 4 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKFLPLQ*TRSLRP
Trigger: GGGTCGTAGAGAGCGGGTCCATTGTAGGGGGAGAAA...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000392062.7
CDS-3UTR TCA 90 bp TCTCTTCATGGAGGAAGTGACCTGTTTATGAGCAAGAACAAGGCCAGGAGAAGGCAGGTGGAATATTGTTaGTCCCAACATGGAAGATTT +
Preference number: 4 (lower is better)
Translates to: SLHGGSDLFMSKNKARRRQVEYC*SQHGRF
Trigger: AAATCTTCCATGTTGGGATCAACAATATTCCACCTG...CCTTCTCCTGGCCTTGTTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTAGAAGAACCAGATGTTaGGGGCCAAAGTTGCTAGGG +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCRRTRC*GPKLLG
Trigger: CCCTAGCAACTTTGGCCCTCAACATCTGGTTCTTCT...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTTGGCTATCGAATCTGTaGAGCCGCTGTCTCCTCATT +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCWLSNL*SRCLLI
Trigger: AATGAGGAGACAGCGGCTTCACAGATTCGATAGCCA...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCTGTATGAGTAAAACCTCCTGGTaGAGGTCACAGTCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: QDRSLVTDPPNAFALLCMSKTSW*RSQSSK
Trigger: TTTTGAAGACTGTGACCTTCACCAGGAGGTTTTACT...CATACAGAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCAGTAAAACCTCCTGGTaGAGGTCACAGTCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLSKTSW*RSQSSK
Trigger: TTTTGAAGACTGTGACCTTCACCAGGAGGTTTTACT...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCAAGCTTCTCGGCTCCTaGGTTTTACAGGTAAGATTC +
Preference number: 4 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLKLLGS*VLQVRF
Trigger: GAATCTTACCTGTAAAACTCAGGAGCCGAGAAGCTT...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000392062.7
CDS-3UTR GCA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTAGCAATTTTAACTACTaGCTCCTCTTCAGAACCAAG +
Preference number: 4 (lower is better)
Translates to: IHQMPSLYSVCGICCYFASNFNY*LLFRTK
Trigger: CTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCT...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAAACCCCATTCTCGCCCTaGCTTGCAGTGCAATTTCCA +
Preference number: 4 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKTPFSP*LAVQFP
Trigger: TGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGT...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TCTCTTCATGGAGGAAGTGACCTGTTTATGAGCAAGAACAAGGCCAGGAGAAGGAAGACATTCTCTCATTaGAGCATAACCAGCAATTCC +
Preference number: 4 (lower is better)
Translates to: SLHGGSDLFMSKNKARRRKTFSH*SITSNS
Trigger: GGAATTGCTGGTTATGCTGCAATGAGAGAATGTCTT...CCTTCTCCTGGCCTTGTTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTAAGGACCAAGAGCCTGTaGCCTTCAACCTCACTGTTC +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVRTKSL*PSTSLF
Trigger: GAACAGTGAGGTTGAAGGGCACAGGCTCTTGGTCCT...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000392062.7
CDS-3UTR CCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTGTGGTGGGCTATTTCTaGTATTTCCTCGGTCCCAGA +
Preference number: 4 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAVVGYF*YFLGPR
Trigger: TCTGGGACCGAGGAAATACCAGAAATAGCCCACCAC...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAGTCAGCAGTGAGAGATaGGAGCGTGGAAACTGGTCT +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEVSSER*ERGNWS
Trigger: AGACCAGTTTCCACGCTCCCATCTCTCACTGCTGAC...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTAGCCACATCCTGTTCCTaGACAGCCACAGTGGCAATG +
Preference number: 4 (lower is better)
Translates to: EAILTTASSSEPSKDSALATSCS*TATVAM
Trigger: CATTGCCACTGTGGCTGTCCAGGAACAGGATGTGGC...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGGCCACATCCTGTTCCTaGACAGCCACAGTGGCAATG +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELATSCS*TATVAM
Trigger: CATTGCCACTGTGGCTGTCCAGGAACAGGATGTGGC...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp ACTTCTTCAATAAGACTTTCTATAAAGGCAGAGCAATACCAGAGCAGAGCGAAACTGAGGTCCAAAGGCTaGTTGAAGCCCACTGTTGAG +
Preference number: 4 (lower is better)
Translates to: TSSIRLSIKAEQYQSRAKLRSKG*LKPTVE
Trigger: CTCAACAGTGGGCTTCAACCAGCCTTTGGACCTCAG...TTTCGCTCTGCTCTGGTATTGCTCTGCCTTTATAGAAAGTCTTATTGAAGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 72 bp ATTCACAATCCATGTTCCCACGTAGAAGGCACACCTTaGTGTAGCTGTGCACAGTTAATAATAGGGGCAAGA +
Preference number: 4 (lower is better)
Translates to: IHNPCSHVEGTP*CSCAQLIIGAR
Trigger: TCTTGCCCCTATTATTAACTGTGCACAGCTACACAAAGGTGTGCCTTCTACGTGGGAACATGGATTGTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTCAATCATCAGCATGGTaGAGGGGAGAGAGCAGTAAA +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCQSSAW*RGESSK
Trigger: TTTACTGCTCTCTCCCCTTCACCATGCTGATGATTG...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCAGGATGGAGGAGGTCTaGACAATTATGTACAACTTT +
Preference number: 4 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLRMEEV*TIMYNF
Trigger: AAAGTTGTACATAATTGTTCAGACCTCCTCCATCCT...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAGGAGGAAAAACCGCCTaGACATGCTTCCATGATTTT +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEGGKTA*TCFHDF
Trigger: AAAATCATGGAAGCATGTGCAGGCGGTTTTTCCTCC...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTCAGATGTTTGCCTTATaGATCTGGAAGGCATATCTA +
Preference number: 4 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVQMFAL*IWKAYL
Trigger: TAGATATGCCTTCCAGATGCATAAGGCAAACATCTG...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGGTCAGCAGTGAGAGATaGGAGCGTGGAAACTGGTCT +
Preference number: 4 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRVSSER*ERGNWS
Trigger: AGACCAGTTTCCACGCTCCCATCTCTCACTGCTGAC...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTACAGACAGACAATCTGTaGATTGTAACGTGGCGGGGC +
Preference number: 4 (lower is better)
Translates to: EAILTTASSSEPSKDSALQTDNL*IVTWRG
Trigger: GCCCCGCCACGTTACAATCCACAGATTGTCTGTCTG...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTTTGTCCTTTTATTCATaGAACACAAGCACCAGGAAA +
Preference number: 4 (lower is better)
Translates to: IHQMPSLYSVCGICCYFALSFYS*NTSTRK
Trigger: TTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAA...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp TCTCTTCATGGAGGAAGTGACCTGTTTATGAGCAAGAACAAGGCCAGGAGAAGGAATTCAGATTGGATTTaGACACAAAACTCCATGGTC +
Preference number: 4 (lower is better)
Translates to: SLHGGSDLFMSKNKARRRNSDWI*TQNSMV
Trigger: GACCATGGAGTTTTGTGTCCAAATCCAATCTGAATT...CCTTCTCCTGGCCTTGTTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGGAGCTCAGATATTACTaGGCCAGCCAGGAGGCCAAA +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELELRYY*ASQEAK
Trigger: TTTGGCCTCCTGGCTGGCCCAGTAATATCTGAGCTC...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAGTTACAGGATTCAGATaGGGGCTGGATGAGGAGGAT +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEVTGFR*GLDEED
Trigger: ATCCTCCTCATCCAGCCCCCATCTGAATCCTGTAAC...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACATTCCAAGTGGTATGTaGAAACTGTGTAGATGTGGT +
Preference number: 4 (lower is better)
Translates to: YFADALNDVLSPGHTSCHIPSGM*KLCRCG
Trigger: ACCACATCTACACAGTTTCCACATACCACTTGGAAT...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 72 bp GTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTaGGACACAAAACTCCATGGTCAATGTGCTCCAAAT +
Preference number: 4 (lower is better)
Translates to: VSRPLPGKFRLD*DTKLHGQCAPN
Trigger: ATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTAGCAAACAAAACTCCTaGGAAACCTACAGCACAGCT +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCSKQNS*ETYSTA
Trigger: AGCTGTGCTGTAGGTTTCTCAGGAGTTTTGTTTGCT...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTCCTGGTGAGAATAAATaGATAGCCACAAGTTCGACC +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCPGENK*IATSST
Trigger: GGTCGAACTTGTGGCTATTCATTTATTCTCACCAGG...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGTGGCTATCGAATCTGTaGAGCCGCTGTCTCCTCATT +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELWLSNL*SRCLLI
Trigger: AATGAGGAGACAGCGGCTTCACAGATTCGATAGCCA...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTGGAGGAAAAACCGCCTaGACATGCTTCCATGATTTT +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCGGKTA*TCFHDF
Trigger: AAAATCATGGAAGCATGTGCAGGCGGTTTTTCCTCC...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTGTATGTGGCATCTGCTaGTACTTTGCTGATGCGTTA +
Preference number: 4 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAVCGIC*YFADAL
Trigger: TAACGCATCAGCAAAGTAGCAGCAGATGCCACATAC...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAACTTAGCTCATTTCCATaGAGGTGTCAAGGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVELSSFP*RCQGLF
Trigger: GAAGAGGCCTTGACACCTGCATGGAAATGAGCTAAG...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTACTTAGCTCATTTCCATaGAGGTGTCAAGGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVLSSFP*RCQGLF
Trigger: GAAGAGGCCTTGACACCTGCATGGAAATGAGCTAAG...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp ACTTCTTCAATAAGACTTTCTATAAAGGCAGAGCAATACCAGAGCAGAGCGAAAGCAGGAGCTATACAGTaGCTTCTGAGGGTTCAAGAA +
Preference number: 4 (lower is better)
Translates to: TSSIRLSIKAEQYQSRAKAGAIQ*LLRVQE
Trigger: TTCTTGAACCCTCAGAAGCCACTGTATAGCTCCTGC...TTTCGCTCTGCTCTGGTATTGCTCTGCCTTTATAGAAAGTCTTATTGAAGAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAATTCTTCATAGTGATCTaGCCTGCCATGCGGATAATA +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEFFIVI*PAMRII
Trigger: TATTATCCGCATGGCAGGCCAGATCACTATGAAGAA...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGGTGGTGGGCTATTTCTaGTATTTCCTCGGTCCCAGA +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELVVGYF*YFLGPR
Trigger: TCTGGGACCGAGGAAATACCAGAAATAGCCCACCAC...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAAAACCCGTAGGGTGGTaGGCTATTTCTGGTATTTCC +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEKPVGW*AISGIS
Trigger: GGAAATACCAGAAATAGCCCACCACCCTACGGGTTT...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGTGGGAGCGTGGAAACTaGTCTCTTCATGGAGGAAGT +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELWERGN*SLHGGS
Trigger: ACTTCCTCCATGAAGAGACCAGTTTCCACGCTCCCA...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTAGCTCTACTCTGTATGTaGCATCTGCTGCTACTTTGC +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVALLCM*HLLLLC
Trigger: GCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGC...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTACCGTGTCTTTGTATCTaGCAAGTCAAACAGAGCAAG +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVPCLCI*QVKQSK
Trigger: CTTGCTCTGTTTGACTTGTCAGATACAAAGACACGG...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAAGGATGGAGGAGGTCTaGACAATTATGTACAACTTT +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQERMEEV*TIMYNF
Trigger: AAAGTTGTACATAATTGTTCAGACCTCCTCCATCCT...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTAGCAGCAGAGAGCCAATaGAAGGTATTTGAGATGCTG +
Preference number: 4 (lower is better)
Translates to: EAILTTASSSEPSKDSALAAESQ*KVFEML
Trigger: CAGCATCTCAAATACCTTTCATTGGCTCTCTGCTGC...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAACATAGTGATCTGGCCTaGCATGCGGATAATAATCCT +
Preference number: 4 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKHSDLA*HADNNP
Trigger: AGGATTATTATCCGCATGGCAGGCCAGATCACTATG...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAGTATGTGGCATCTGCTaGTACTTTGCTGATGCGTTA +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEVCGIC*YFADAL
Trigger: TAACGCATCAGCAAAGTAGCAGCAGATGCCACATAC...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGTCTGTATGTGGCATCTaGTGCTACTTTGCTGATGCG +
Preference number: 4 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRSVCGI*CYFADA
Trigger: CGCATCAGCAAAGTAGCAGCAGATGCCACATACAGA...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTAACTTAGGGAATGACTaGAATGATTCATGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCANLGND*NDSWEG
Trigger: CCCTTCCCATGAATCATTGCAGTCATTCCCTAAGTT...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAAAGACATTCTCTCATTaGAGCATAACCAGCAATTCC +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEKTFSH*SITSNS
Trigger: GGAATTGCTGGTTATGCTGCAATGAGAGAATGTCTT...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp ACTTCTTCAATAAGACTTTCTATAAAGGCAGAGCAATACCAGAGCAGAGCGAAAGAAACAGATGGTCCCTaGCCTCATGAAGCTTACAAT +
Preference number: 4 (lower is better)
Translates to: TSSIRLSIKAEQYQSRAKETDGP*PHEAYN
Trigger: ATTGTAAGCTTCATGAGGGCAGGGACCATCTGTTTC...TTTCGCTCTGCTCTGGTATTGCTCTGCCTTTATAGAAAGTCTTATTGAAGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAAGAAAACGTACTCAGGTaGTCAGTTTCAGGTATCTGG +
Preference number: 4 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKENVLR*SVSGIW
Trigger: CCAGATACCTGAAACTGACCACCTGAGTACGTTTTC...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAGAAAACGTACTCAGGTaGTCAGTTTCAGGTATCTGG +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEENVLR*SVSGIW
Trigger: CCAGATACCTGAAACTGACCACCTGAGTACGTTTTC...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCAGGTAAATTCAGATTaGATTTGGACACAAAACTCC +
Preference number: 4 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLQVNSD*IWTQNS
Trigger: GGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTG...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAACCAATTCCAGTTTGTTaGCATAACTTTAGGGATTCC +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEPIPVC*HNFRDS
Trigger: GGAATCCCTAAAGTTATGCCAACAAACTGGAATTGG...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAAATTCCAAGTGGTATGTaGAAACTGTGTAGATGTGGT +
Preference number: 4 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEIPSGM*KLCRCG
Trigger: ACCACATCTACACAGTTTCCACATACCACTTGGAAT...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATCTTCATGGAGGAAGTaGCCTGTTTATGAGCAAGAA +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVESSWRK*PVYEQE
Trigger: TTCTTGCTCATAAACAGGTCACTTCCTCCATGAAGA...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGAAAGGTCGCTTAAGTTaGCTGACCACACCAAACTGT +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELKGRLS*LTTPNC
Trigger: ACAGTTTGGTGTGGTCAGTCAACTTAAGCGACCTTT...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTAAAAACCGCCTGCACATaGTTCCATGATTTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVKTACT*FHDFLQ
Trigger: CTGAAGAAAATCATGGAAGCATGTGCAGGCGGTTTT...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAAAAACCGCCTGCACATaGTTCCATGATTTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEKTACT*FHDFLQ
Trigger: CTGAAGAAAATCATGGAAGCATGTGCAGGCGGTTTT...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTAGTCATAGTTCCTGGGTaGTTCTTCATAGTGATCTGG +
Preference number: 4 (lower is better)
Translates to: EAILTTASSSEPSKDSALVIVPG*FFIVIW
Trigger: CCAGATCACTATGAAGAAGCACCCAGGAACTATGAC...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTCTTTCCAGATGTTTaGCTTATGCATCTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEFFPDV*LMHLEG
Trigger: GCCTTCCAGATGCATAAGGCAAACATCTGGAAAGAA...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTACTCCATCAACAGCCATaGGTATCACAATTTTACCAC +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVLHQQP*VSQFYH
Trigger: GTGGTAAAATTGTGATACGCATGGCTGTTGATGGAG...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAAAGGCAGCAGAACATGTaGCAAATAGATAGACAGGAT +
Preference number: 4 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKRQQNM*QIDRQD
Trigger: ATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCT...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGTTGATCTCCGTTGCATaGCCAGATATCAGGGAAACA +
Preference number: 4 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRLISVA*PDIRET
Trigger: TGTTTCCCTGATATCTGGCCATGCAACGGAGATCAA...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp ACTTCTTCAATAAGACTTTCTATAAAGGCAGAGCAATACCAGAGCAGAGCGAAAAAGTGGCTGGTACAATaGCCAATTAAGAGGCACTTT +
Preference number: 4 (lower is better)
Translates to: TSSIRLSIKAEQYQSRAKKWLVQ*PIKRHF
Trigger: AAAGTGCCTCTTAATTGGCCATTGTACCAGCCACTT...TTTCGCTCTGCTCTGGTATTGCTCTGCCTTTATAGAAAGTCTTATTGAAGAAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTGGACACAAAACTCCATaGTCAATGTGCTCCAAATTT +
Preference number: 4 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAGHKTP*SMCSKF
Trigger: AAATTTGGAGCACATTGACCATGGAGTTTTGTGTCC...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTATATCCAGAGCTGCCTaGACTATTAAAGTAGTATTG +
Preference number: 4 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCISRAA*TIKVVL
Trigger: CAATACTACTTTAATAGTTCAGGCAGCTCTGGATAT...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTATGTGACTCTCTAAGCTaGGAGTCTGTGATTCTAAAA +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVCDSLS*ESVILK
Trigger: TTTTAGAATCACAGACTCTCAGCTTAGAGAGTCACA...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTAGTATTTATTGGTTCTaGCATTCCAGACAACGTACT +
Preference number: 4 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCASIYWF*HSRQRT
Trigger: AGTACGTTGTCTGGAATGTCAGAACCAATAAATACT...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGTTCTTTCCAGATGTTTaGCTTATGCATCTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELFFPDV*LMHLEG
Trigger: GCCTTCCAGATGCATAAGGCAAACATCTGGAAAGAA...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTAACTCCATGGTCAATGTaGTCCAAATTTGCTGAATGT +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVTPWSM*SKFAEC
Trigger: ACATTCAGCAAATTTGGAGCACATTGACCATGGAGT...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTACTCCATCAACAGCCATaGGTATCACAATTTTACCAC +
Preference number: 4 (lower is better)
Translates to: EAILTTASSSEPSKDSALLHQQP*VSQFYH
Trigger: GTGGTAAAATTGTGATACGCATGGCTGTTGATGGAG...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAAGCAATTTTAACTACTaGCTCCTCTTCAGAACCAAG +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVESNFNY*LLFRTK
Trigger: CTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCT...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTTAGGTATAGCTCATaGCCTGAGGATTTCTATTCC +
Preference number: 4 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEFRYSS*PEDFYS
Trigger: GGAATAGAAATCCTCAGGGCATGAGCTATACCTAAA...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000392062.7
CDS-3UTR CCA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCAGGTAAATTCAGATTaGATTTGGACACAAAACTCC +
Preference number: 4 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAQVNSD*IWTQNS
Trigger: GGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTG...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
3UTR CAA 72 bp TCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTaGTATCTGACAAGTCAAACAGAGCAAGGAAGTACT +
Preference number: 4 (lower is better)
Translates to: SQFYHPKSNPVS*YLTSQTEQGST
Trigger: AGTACTTCCTTGCTCTGTTTGACTTGTCAGATACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTAATATCCAGAGCTGCCTaGACTATTAAAGTAGTATTG +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVISRAA*TIKVVL
Trigger: CAATACTACTTTAATAGTTCAGGCAGCTCTGGATAT...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTATGTGACTCTCTAAGCTaGGAGTCTGTGATTCTAAAA +
Preference number: 4 (lower is better)
Translates to: EAILTTASSSEPSKDSALCDSLS*ESVILK
Trigger: TTTTAGAATCACAGACTCTCAGCTTAGAGAGTCACA...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR TCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGATAATTGAGATACTGTaGCTCTCTAAGCTGAGAGTC +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELIIEIL*LSKLRV
Trigger: GACTCTCAGCTTAGAGAGTCACAGTATCTCAATTAT...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR GCA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGCAGATGTTTGCCTTATaGATCTGGAAGGCATATCTA +
Preference number: 4 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRQMFAL*IWKAYL
Trigger: TAGATATGCCTTCCAGATGCATAAGGCAAACATCTG...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTAGAAGTTACTTCTAATTaGGGTAACGGGAGTCAAACT +
Preference number: 4 (lower is better)
Translates to: EAILTTASSSEPSKDSALEVTSN*GNGSQT
Trigger: AGTTTGACTCCCGTTACCCCAATTAGAAGTAACTTC...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGGAAGTTACTTCTAATTaGGGTAACGGGAGTCAAACT +
Preference number: 4 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELEVTSN*GNGSQT
Trigger: AGTTTGACTCCCGTTACCCCAATTAGAAGTAACTTC...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp TTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCCAAATTTGCTGAATGTATTTGCCTTATGCATCTaGAAGGCATATCTATTATGT +
Preference number: 4 (lower is better)
Translates to: LDLDTKLHGQCAPNLLNVFALCI*KAYLLC
Trigger: ACATAATAGATATGCCTTCCAGATGCATAAGGCAAA...TACATTCAGCAAATTTGGAGCACATTGACCATGGAGTTTTGTGTCCAAATCCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGGGCAATTTAAAAGGATaGAGGAGGTCTGAACAATTA +
Preference number: 4 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRGNLKG*RRSEQL
Trigger: TAATTGTTCAGACCTCCTCCATCCTTTTAAATTGCC...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTACAAACTTACAGAATTTaGGAGAGAGCAGTAACATTT +
Preference number: 4 (lower is better)
Translates to: EAILTTASSSEPSKDSALQTYRI*ERAVTF
Trigger: AAATGTTACTGCTCTCTCCCAAATTCTGTAAGTTTG...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CCA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGCAAACTTACAGAATTTaGGAGAGAGCAGTAACATTT +
Preference number: 4 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRQTYRI*ERAVTF
Trigger: AAATGTTACTGCTCTCTCCCAAATTCTGTAAGTTTG...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS GCA 90 bp ATATACAGACGGCTGAACCCAACGGACGCCTCTGCCCAGGTTCTCTaGCGGGAAGCTTCGTCCTTCCGGGCCCCAGCGCAGCCGGAGGCT +
Preference number: 5 (lower is better)
Translates to: IYRRLNPTDASAQVL*REASSFRAPAQPEA
Trigger: AGCCTCCGGCTGCGCTGGGGCCCGGAAGGACGAAGCTTCCCGGCAGAGAACCTGGGCAGAGGCGTCCGTTGGGTTCAGCCGTCTGTATAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424132.1
CDS-3UTR CAA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCAGGTCCAAAGGCTGGTaGAAGCCCACTGTTGAGGCT +
Preference number: 5 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAARSKGW*KPTVEA
Trigger: AGCCTCAACAGTGGGCTTCAACCAGCCTTTGGACCT...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTGCTGAGGCGCCGGGGTaGGGGAGAGTAGGACAACAT +
Preference number: 5 (lower is better)
Translates to: SYPILALPCSAISRVGGGAEAPG*GRVGQH
Trigger: ATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGC...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCGTGACAGGTGGAATATaGTTGATCCCAACATGGAAG +
Preference number: 5 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAAVTGGI*LIPTWK
Trigger: CTTCCATGTTGGGATCAACAATATTCCACCTGTCAC...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS GCA 90 bp CACTACAGGGACCCTGCAGCCTCAAAGGATTCCTTAGGTCCAAACTaGGGCCTGCTTCAGGCTTCCCAGGCATCTGGGTCCTTTGTCTGT +
Preference number: 5 (lower is better)
Translates to: HYRDPAASKDSLGPN*GLLQASQASGSFVC
Trigger: ACAGACAAAGGACCCAGATGCCTGGGAAGCCTGAAGCAGGCCGCAGTTTGGACCTAAGGAATCCTTTGAGGCTGCAGGGTCCCTGTAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000409053.1
CDS-3UTR CAA 90 bp GGAGCTGAGGCGCCGGGGTTGGGGAGAGTAGGACAACATTCGGCCAAGGCAGCCTCCAAACATAAGCACTaGTTACAGGCAAGTCCATTA +
Preference number: 5 (lower is better)
Translates to: GAEAPGLGRVGQHSAKAASKHKH*LQASPL
Trigger: TAATGGACTTGCCTGTAACAAGTGCTTATGTTTGGA...GGCTGCCTTGGCCGAATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS CCA 90 bp GCTCAGCAATGGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCTGAACGCTCTCTACGACCCGCCTGC +
Preference number: 5 (lower is better)
Translates to: AQQWENVLRWSVSGI*GDIQTAERSLRPAC
Trigger: GCAGGCGGGTCGTAGAGAGCGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341329.7
CDS CCA 90 bp GCTCAGCAATGGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCTGAACCCAACGGACGCCTCTGCCCA +
Preference number: 5 (lower is better)
Translates to: AQQWENVLRWSVSGI*GDIQTAEPNGRLCP
Trigger: TGGGCAGAGGCGTCCGTTGGGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424132.1
CDS-3UTR CAA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAACCCTATCGTGAGCCTTaGGGGTTGGAAAGGGGAGAC +
Preference number: 5 (lower is better)
Translates to: PRACFGHLARTSGWYNGQPYREP*GLERGD
Trigger: GTCTCCCCTTTCCAACCCCAAAGGCTCACGATAGGG...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTCCCGCAAGCTGTGAGTaGACTCATAGGGGCCATGGG +
Preference number: 5 (lower is better)
Translates to: IHQMPSLYSVCGICCYFAPASCE*THRGHG
Trigger: CCCATGGCCCCTATGAGTCAACTCACAGCTTGCGGG...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS TCA 90 bp CGGCCTGCTTCAGGCTTCCCAGGCATCTGGGTCCTTTGTCTGTTCTaGCCTTTATCTTGGGGTCCAGGAGACTTGCCATTGTCTCTTTAT +
Preference number: 5 (lower is better)
Translates to: RPASGFPGIWVLCLF*PLSWGPGDLPLSLY
Trigger: ATAAAGAGACAATGGCAAGTCTCCTGGACCCCAAGATAAAGGTCAGAACAGACAAAGGACCCAGATGCCTGGGAAGCCTGAAGCAGGCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000409053.1
CDS GCA 90 bp GGGTCCTTTGTCTGTTCTGACCTTTATCTTGGGGTCCAGGAGACTTaGCATTGTCTCTTTATGACCTGGTTTTCCTCGGTCCCAGAGGCT +
Preference number: 5 (lower is better)
Translates to: GSFVCSDLYLGVQET*HCLFMTWFSSVPEA
Trigger: AGCCTCTGGGACCGAGGAAAACCAGGTCATAAAGAGACAATGGCAAGTCTCCTGGACCCCAAGATAAAGGTCAGAACAGACAAAGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000409053.1
CDS-3UTR CAA 90 bp AGCTACCCCATTCTCGCCCTGCCTTGCAGTGCAATTTCCAGGGTAGGGGGAGGTACAGGTGGAATATTGTaGATCCCAACATGGAAGATT +
Preference number: 5 (lower is better)
Translates to: SYPILALPCSAISRVGGGTGGIL*IPTWKI
Trigger: AATCTTCCATGTTGGGATCAACAATATTCCACCTGT...ACCTCCCCCTACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATGGGGTAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS CCA 90 bp CCAGATATCAGGGAAACAGCTCAGCAATGGGAAAACGTACTCAGGTaGTCAGTTTCAGGTATCTGGGGAGATATACAGACGGCTGAACGC +
Preference number: 5 (lower is better)
Translates to: PDIRETAQQWENVLR*SVSGIWGDIQTAER
Trigger: GCGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCTGATATCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341329.7
CDS CCA 90 bp CCAGATATCAGGGAAACAGCTCAGCAATGGGAAAACGTACTCAGGTaGTCAGTTTCAGGTATCTGGGGAGATATACAGACGGCTGAACCC +
Preference number: 5 (lower is better)
Translates to: PDIRETAQQWENVLR*SVSGIWGDIQTAEP
Trigger: GGGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCTGATATCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424132.1
CDS-3UTR CAA 90 bp CCAAGGGCGTGTTTTGGACATTTGGCTAGGACAAGTGGCTGGTACAATGGCCAACAGTATTTATCCCTCTaGATCTCCGTTGCATGGCCA +
Preference number: 5 (lower is better)
Translates to: PRACFGHLARTSGWYNGQQYLSL*ISVAWP
Trigger: TGGCCATGCAACGGAGATCAAGAGGGATAAATACTG...TTGGCCATTGTACCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGCCCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACAGGTCCAAAGGCTGGTaGAAGCCCACTGTTGAGGCT +
Preference number: 5 (lower is better)
Translates to: YFADALNDVLSPGHTSCHRSKGW*KPTVEA
Trigger: AGCCTCAACAGTGGGCTTCAACCAGCCTTTGGACCT...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS CCA 90 bp TTGATCTCCGTTGCATGGCCAGATATCAGGGAAACAGCTCAGCAATaGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATCTGGGGAGAT +
Preference number: 5 (lower is better)
Translates to: LISVAWPDIRETAQQ*ENVLRWSVSGIWGD
Trigger: ATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCTGATATCTGGCCATGCAACGGAGATCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000341329.7
ENST00000392062.7
ENST00000424132.1
ENST00000436481.1
ENST00000437454.5
ENST00000443477.5
ENST00000448992.5
CDS CCA 90 bp CCAGATATCAGGGAAACAGCTCAGCAATGGGAAAACGTACTCAGGTaGTCAGTTTCAGGTATCTGGGGAGATATACAGACGGCTGAACCA +
Preference number: 5 (lower is better)
Translates to: PDIRETAQQWENVLR*SVSGIWGDIQTAEP
Trigger: TGGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCTGATATCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000392062.7
ENST00000436481.1
ENST00000437454.5
ENST00000443477.5
CDS CCA 90 bp TTGATCTCCGTTGCATGGCCAGATATCAGGGAAACAGCTCAGCAATaGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATGCTCTCTACG +
Preference number: 5 (lower is better)
Translates to: LISVAWPDIRETAQQ*ENVLRWSVSGMLST
Trigger: CGTAGAGAGCATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCTGATATCTGGCCATGCAACGGAGATCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000423616.1
CDS CCA 90 bp CCAGATATCAGGGAAACAGCTCAGCAATGGGAAAACGTACTCAGGTaGTCAGTTTCAGGTATCTGGGGAGATATACAGACGGCTGAACCT +
Preference number: 5 (lower is better)
Translates to: PDIRETAQQWENVLR*SVSGIWGDIQTAEP
Trigger: AGGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCTGATATCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000448992.5
CDS CCA 90 bp GTACCAAGCCTCGGCTTTGATGTCTCTGTACAAGCAGAGACACTCTaGCTAAATGGAGAACCTTCCTCAAAGAAGGTGTTAGGAGAGCCA +
Preference number: 5 (lower is better)
Translates to: VPSLGFDVSVQAETL*LNGEPSSKKVLGEP
Trigger: TGGCTCTCCTAACACCTTCTTTGAGGAAGGTTCTCCATTTAGCCAGAGTGTCTCTGCTTGTACAGAGACATCAAAGCCGAGGCTTGGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000493526.1
CDS-3UTR CAA 90 bp ACTTCTTCAATAAGACTTTCTATAAAGGCAGAGCAATACCAGAGCAGAGCGAAAGCTGAGGCGCCGGGGTaGGGGAGAGTAGGACAACAT +
Preference number: 5 (lower is better)
Translates to: TSSIRLSIKAEQYQSRAKAEAPG*GRVGQH
Trigger: ATGTTGTCCTACTCTCCCCAACCCCGGCGCCTCAGC...TTTCGCTCTGCTCTGGTATTGCTCTGCCTTTATAGAAAGTCTTATTGAAGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTTCTCATCCCTTTAGCTaGCTTACTCCCCAGGCAGCA +
Preference number: 5 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVSHPFS*LTPQAA
Trigger: TGCTGCCTGGGGAGTAAGCAAGCTAAAGGGATGAGA...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS CCA 90 bp GCTCAGCAATGGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCTGAACCTTCTCAACATTGCAGTGAA +
Preference number: 5 (lower is better)
Translates to: AQQWENVLRWSVSGI*GDIQTAEPSQHCSE
Trigger: TTCACTGCAATGTTGAGAAGGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448992.5
CDS-3UTR CAA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTTTCGGCAACAGCAAATaGCAAGAGCAGGTATACCAC +
Preference number: 5 (lower is better)
Translates to: IHQMPSLYSVCGICCYFAFGNSK*QEQVYH
Trigger: GTGGTATACCTGCTCTTGCAATTTGCTGTTGCCGAA...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAACCCGCAAGCTGTGAGTaGACTCATAGGGGCCATGGG +
Preference number: 5 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEPASCE*THRGHG
Trigger: CCCATGGCCCCTATGAGTCAACTCACAGCTTGCGGG...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTCCCTATCGTGAGCCTTaGGGGTTGGAAAGGGGAGAC +
Preference number: 5 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCPYREP*GLERGD
Trigger: GTCTCCCCTTTCCAACCCCAAAGGCTCACGATAGGG...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS CCA 90 bp TTTTTGCTGGTAACACTTCTCCACACTAAGGCAGGAGCTATACAGTaGCTTCTGAGGGTTCAAGAAGAACCAGATGTTGAGGGCCAAAGT +
Preference number: 5 (lower is better)
Translates to: FLLVTLLHTKAGAIQ*LLRVQEEPDVEGQS
Trigger: ACTTTGGCCCTCAACATCTGGTTCTTCTTGAACCCTCAGAAGCCACTGTATAGCTCCTGCCTTAGTGTGGAGAAGTGTTACCAGCAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000341329.7
ENST00000392062.7
ENST00000423616.1
ENST00000424132.1
ENST00000448992.5
CDS-3UTR CAA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTCAGTATTTATCCCTCTaGATCTCCGTTGCATGGCCA +
Preference number: 5 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVQYLSL*ISVAWP
Trigger: TGGCCATGCAACGGAGATCAAGAGGGATAAATACTG...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACTTCGGCAACAGCAAATaGCAAGAGCAGGTATACCAC +
Preference number: 5 (lower is better)
Translates to: YFADALNDVLSPGHTSCHFGNSK*QEQVYH
Trigger: GTGGTATACCTGCTCTTGCAATTTGCTGTTGCCGAA...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTGTAGAAGGCACACCTTaGTGTAGCTGTGCACAGTTA +
Preference number: 5 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVVEGTP*CSCAQL
Trigger: TAACTGTGCACAGCTACACAAAGGTGTGCCTTCTAC...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp ATCCACCAAATGCCTTCGCTCTACTCTGTATGTGGCATCTGCTGCTACTTTGCTAAAAGGTCGCTTAAGTaGACTGACCACACCAAACTG +
Preference number: 5 (lower is better)
Translates to: IHQMPSLYSVCGICCYFAKRSLK*TDHTKL
Trigger: CAGTTTGGTGTGGTCAGTCAACTTAAGCGACCTTTT...AGCAAAGTAGCAGCAGATGCCACATACAGAGTAGAGCGAAGGCATTTGGTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCATTCTCGCCCTGCCTaGCAGTGCAATTTCCAGGGT +
Preference number: 5 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAHSRPA*QCNFQG
Trigger: ACCCTGGAAATTGCACTGCAAGGCAGGGCGAGAATG...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTGCGTGTTTTGGACATTaGGCTAGGACAAGTGGCTGG +
Preference number: 5 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCACFGH*ARTSGW
Trigger: CCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGC...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CTGAATCTCTCAAGAAAAACTAAGACTGGGAACAAGGAGGCCAGGTCTGCCAGCTCTAATCCCGTGTCTTaGTATCTGACAAGTCAAACA +
Preference number: 5 (lower is better)
Translates to: LNLSRKTKTGNKEARSASSNPVS*YLTSQT
Trigger: TGTTTGACTTGTCAGATACAAAGACACGGGATTAGA...GCTGGCAGACCTGGCCTCCTTGTTCCCAGTCTTAGTTTTTCTTGAGAGATTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTTCTCATCCCTTTAGCTaGCTTACTCCCCAGGCAGCA +
Preference number: 5 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCASHPFS*LTPQAA
Trigger: TGCTGCCTGGGGAGTAAGCAAGCTAAAGGGATGAGA...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS GCA 90 bp GAAAGGAGTAGAATAAGTCCAGTATTTATCCCTCTTGATCTCCGTTaGATGGCCAGATATCAGGGAAACAGCTCAGCAATGGGAAAACGT +
Preference number: 5 (lower is better)
Translates to: ERSRISPVFIPLDLR*MARYQGNSSAMGKR
Trigger: ACGTTTTCCCATTGCTGAGCTGTTTCCCTGATATCTGGCCATGCAACGGAGATCAAGAGGGATAAATACTGGACTTATTCTACTCCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000341329.7
ENST00000392062.7
ENST00000423616.1
ENST00000424132.1
ENST00000436481.1
ENST00000437454.5
ENST00000448992.5
CDS CCA 90 bp GCTCAGCAATGGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCTGAACCAGAATTCTTAATACCATTA +
Preference number: 5 (lower is better)
Translates to: AQQWENVLRWSVSGI*GDIQTAEPEFLIPL
Trigger: TAATGGTATTAAGAATTCTGGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000392062.7
ENST00000436481.1
ENST00000437454.5
ENST00000443477.5
CDS-3UTR CAA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCACTATTAAAGTAGTATaGCCGTCCTGGGTAACCAAC +
Preference number: 5 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLTIKVV*PSWVTN
Trigger: GTTGGTTACCCAGGACGGCAATACTACTTTAATAGT...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAGCGTGTTTTGGACATTaGGCTAGGACAAGTGGCTGG +
Preference number: 5 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEACFGH*ARTSGW
Trigger: CCAGCCACTTGTCCTAGCCAAATGTCCAAAACACGC...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAAGCCCAAGGGCGTGTTTaGGACATTTGGCTAGGACAA +
Preference number: 5 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKAQGRV*DIWLGQ
Trigger: TTGTCCTAGCCAAATGTCCAAAACACGCCCTTGGGC...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS GCA 90 bp GCTGAACCAGAATTCTTAATACCATTACGTTTTAGGTATAGCTCATaGCCTGAGGATTTCTATTCCACCACAGAGTTTCACGTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: AEPEFLIPLRFRYSS*PEDFYSTTEFHVQL
Trigger: GAGCTGGACGTGAAACTCTGTGGTGGAATAGAAATCCTCAGGGCATGAGCTATACCTAAAACGTAATGGTATTAAGAATTCTGGTTCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000392062.7
ENST00000436481.1
ENST00000437454.5
ENST00000443477.5
CDS GCA 90 bp TTGCTACAAATAGCTCTTTTTCAGACTACCTTACCACATGAGGTATaGTTTAAAATAACTGAAGGGCGCAAGACTCCTACCTCGGTCCCA +
Preference number: 5 (lower is better)
Translates to: LLQIALFQTTLPHEV*FKITEGRKTPTSVP
Trigger: TGGGACCGAGGTAGGAGTCTTGCGCCCTTCAGTTATTTTAAAGCATACCTCATGTGGTAAGGTAGTCTGAAAAAGAGCTATTTGTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000473218.5
CDS-3UTR CAA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCACAGGTGGAATATTGTaGATCCCAACATGGAAGATT +
Preference number: 5 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLTGGIL*IPTWKI
Trigger: AATCTTCCATGTTGGGATCAACAATATTCCACCTGT...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCTTTCTTTCCAGATGTTaGCCTTATGCATCTGGAAGG +
Preference number: 5 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLFLSRC*PYASGR
Trigger: CCTTCCAGATGCATAAGGCAAACATCTGGAAAGAAA...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp TACTTTGCTGATGCGTTAAATGATGTCCTATCTCCTGGACACACAAGCTGCCACTCTAATCCCGTGTCTTaGTATCTGACAAGTCAAACA +
Preference number: 5 (lower is better)
Translates to: YFADALNDVLSPGHTSCHSNPVS*YLTSQT
Trigger: TGTTTGACTTGTCAGATACAAAGACACGGGATTAGA...GTGGCAGCTTGTGTGTCCAGGAGATAGGACATCATTTAACGCATCAGCAAAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTCTTGCTCACTTGCTTTaGTCTTTCTCAATCCAATTC +
Preference number: 5 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVLAHLL*SFSIQF
Trigger: GAATTGGATTGAGAAAGACAAAAGCAAGTGAGCAAG...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp TGCTTACTCCCCAGGCAGCAGAACATGTGCCAAATAGATAGACAGGATCTAGTTAAAGACATTCTCTCATaGCAGCATAACCAGCAATTC +
Preference number: 5 (lower is better)
Translates to: CLLPRQQNMCQIDRQDLVKDILS*QHNQQF
Trigger: GAATTGCTGGTTATGCTGCAATGAGAGAATGTCTTT...AACTAGATCCTGTCTATCTATTTGGCACATGTTCTGCTGCCTGGGGAGTAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp TTTCTGCAAGATAGATCTCTAGTGACCGATCCACCAAATGCCTTCGCTCTACTCAAAGACATTCTCTCATaGCAGCATAACCAGCAATTC +
Preference number: 5 (lower is better)
Translates to: FLQDRSLVTDPPNAFALLKDILS*QHNQQF
Trigger: GAATTGCTGGTTATGCTGCAATGAGAGAATGTCTTT...GAGTAGAGCGAAGGCATTTGGTGGATCGGTCACTAGAGATCTATCTTGCAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CAGGTGTCAAGGCCTCTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCAGTGATCTTCTGACTTaGTCCTTTTATTCATGGAAC +
Preference number: 5 (lower is better)
Translates to: QVSRPLPGKFRLDLDTKLSDLLT*SFYSWN
Trigger: GTTCCATGAATAAAAGGACAAAGTCAGAAGATCACT...GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAGAGGCCTTGACACCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp AGGAAAGAGCTGTTCCATGTAAAAGCACAGCACAGAATGTCACAAGATCAGGAACCAGGTAAATTCAGATaGGATTTGGACACAAAACTC +
Preference number: 5 (lower is better)
Translates to: RKELFHVKAQHRMSQDQEPGKFR*DLDTKL
Trigger: GAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGG...TTCCTGATCTTGTGACATTCTGTGCTGTGCTTTTACATGGAACAGCTCTTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CTTCCAGGTAAATTCAGATTGGATTTGGACACAAAACTCCATGGTCAATGTGCTCAATGTGCTCCAAATTaGCTGAATGTATCAACGGAA +
Preference number: 5 (lower is better)
Translates to: LPGKFRLDLDTKLHGQCAQCAPN*LNVSTE
Trigger: TTCCGTTGATACATTCAGCAAATTTGGAGCACATTG...AGCACATTGACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTTACCTGGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp AACAGCCATGCGTATCACAATTTTACCACCCAAAATCTAATCCCGTGTCTTTGTCTTGCTCACTTGCTTTaGTCTTTCTCAATCCAATTC +
Preference number: 5 (lower is better)
Translates to: NSHAYHNFTTQNLIPCLCLAHLL*SFSIQF
Trigger: GAATTGGATTGAGAAAGACAAAAGCAAGTGAGCAAG...ACAAAGACACGGGATTAGATTTTGGGTGGTAAAATTGTGATACGCATGGCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp AGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAATTGAAAAGGTCGCTTAAGTaGACTGACCACACCAAACTG +
Preference number: 5 (lower is better)
Translates to: SGIMKVNFGRLSWSYVELKRSLK*TDHTKL
Trigger: CAGTTTGGTGTGGTCAGTCAACTTAAGCGACCTTTT...CAATTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGACTATTAAAGTAGTATaGCCGTCCTGGGTAACCAAC +
Preference number: 5 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRTIKVV*PSWVTN
Trigger: GTTGGTTACCCAGGACGGCAATACTACTTTAATAGT...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGTTTCTTTCCAGATGTTaGCCTTATGCATCTGGAAGG +
Preference number: 5 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRFLSRC*PYASGR
Trigger: CCTTCCAGATGCATAAGGCAAACATCTGGAAAGAAA...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CTTCTGACTTTGTCCTTTTATTCATGGAACACAAGCACCAGGAAATGCCTTAAACAATGTGCTCCAAATTaGCTGAATGTATCAACGGAA +
Preference number: 5 (lower is better)
Translates to: LLTLSFYSWNTSTRKCLKQCAPN*LNVSTE
Trigger: TTCCGTTGATACATTCAGCAAATTTGGAGCACATTG...TTTAAGGCATTTCCTGGTGCTTGTGTTCCATGAATAAAAGGACAAAGTCAGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CTGAGTGGCATCATGAAAGTGAATTTTGGAAGACTAAGCTGGAGTTATGTAGAAAAATTCAGATTGGATTaGGACACAAAACTCCATGGT +
Preference number: 5 (lower is better)
Translates to: LSGIMKVNFGRLSWSYVEKFRLD*DTKLHG
Trigger: ACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTT...TTCTACATAACTCCAGCTTAGTCTTCCAAAATTCACTTTCATGATGCCACTCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp ACTTCTTCAATAAGACTTTCTATAAAGGCAGAGCAATACCAGAGCAGAGCGAAAAATACACTTGCTCACTaGCTTTTGTCTTTCTCAATC +
Preference number: 5 (lower is better)
Translates to: TSSIRLSIKAEQYQSRAKNTLAH*LLSFSI
Trigger: GATTGAGAAAGACAAAAGCAAGTGAGCAAGTGTATT...TTTCGCTCTGCTCTGGTATTGCTCTGCCTTTATAGAAAGTCTTATTGAAGAAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp GAAGCAATTTTAACTACTGCCTCCTCTTCAGAACCAAGTAAAGATTCTGCATTAAGTGATCTTCTGACTTaGTCCTTTTATTCATGGAAC +
Preference number: 5 (lower is better)
Translates to: EAILTTASSSEPSKDSALSDLLT*SFYSWN
Trigger: GTTCCATGAATAAAAGGACAAAGTCAGAAGATCACT...TAATGCAGAATCTTTACTTGGTTCTGAAGAGGAGGCAGTAGTTAAAATTGCTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS-3UTR CAA 90 bp CAAATAGATAGACAGGATCTAGTTCTACTCAAACTAGTTATTTACTGCAGCAGGAAATTCAGATTGGATTaGGACACAAAACTCCATGGT +
Preference number: 5 (lower is better)
Translates to: QIDRQDLVLLKLVIYCSRKFRLD*DTKLHG
Trigger: ACCATGGAGTTTTGTGTCCAAATCCAATCTGAATTT...CCTGCTGCAGTAAATAACTAGTTTGAGTAGAACTAGATCCTGTCTATCTATTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341329.7
ENST00000392062.7
CDS GCA 72 bp ACGACCCGCCTGCGTCCCCACGTCTTCGCGCGCACGTaGGTCATCACGCACGTTCCCGATCCGGGGCGCCCC +
Preference number: 6 (lower is better)
Translates to: TTRLRPHVFART*VITHVPDPGRP
Trigger: GGGGCGCCCCGGATCGGGAACGTGCGTGATGACGCACGTGCGCGCGAAGACGTGGGGACGCAGGCGGGTCGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341329.7
CDS GCA 72 bp CGGCTGAACCCAACGGACGCCTCTGCCCAGGTTCTCTaGCGGGAAGCTTCGTCCTTCCGGGCCCCAGCGCAG +
Preference number: 6 (lower is better)
Translates to: RLNPTDASAQVL*REASSFRAPAQ
Trigger: CTGCGCTGGGGCCCGGAAGGACGAAGCTTCCCGGCAGAGAACCTGGGCAGAGGCGTCCGTTGGGTTCAGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424132.1
CDS GCA 72 bp CCGCCAGCTCCCGCAGCCCGGGGAAACGGCGAGAGATaGCGCTCACAACCAACGACAGCAGCCGGACCAAAC +
Preference number: 6 (lower is better)
Translates to: PPAPAARGNGER*RSQPTTAAGPN
Trigger: GTTTGGTCCGGCTGCTGTCGTTGGTTGTGAGCGGCATCTCTCGCCGTTTCCCCGGGCTGCGGGAGCTGGCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000539613.5
CDS GCA 72 bp CTCCCCCTACAATGGACCCGCTCTCTACGACCCGCCTaGGTCCCCACGTCTTCGCGCGCACGTGCGTCATCA +
Preference number: 6 (lower is better)
Translates to: LPLQWTRSLRPA*VPTSSRARASS
Trigger: TGATGACGCACGTGCGCGCGAAGACGTGGGGACGCAGGCGGGTCGTAGAGAGCGGGTCCATTGTAGGGGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000437454.5
CDS GCA 72 bp GATATACAGACGGCTGAACGCTCTCTACGACCCGCCTaGGTCCCCACGTCTTCGCGCGCACGTGCGTCATCA +
Preference number: 6 (lower is better)
Translates to: DIQTAERSLRPA*VPTSSRARASS
Trigger: TGATGACGCACGTGCGCGCGAAGACGTGGGGACGCAGGCGGGTCGTAGAGAGCGTTCAGCCGTCTGTATATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341329.7
CDS GCA 72 bp GACCCTGCAGCCTCAAAGGATTCCTTAGGTCCAAACTaGGGCCTGCTTCAGGCTTCCCAGGCATCTGGGTCC +
Preference number: 6 (lower is better)
Translates to: DPAASKDSLGPN*GLLQASQASGS
Trigger: GGACCCAGATGCCTGGGAAGCCTGAAGCAGGCCGCAGTTTGGACCTAAGGAATCCTTTGAGGCTGCAGGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000409053.1
CDS GCA 72 bp TCCTCTTCCAGGAGGCATCAGACAGCAGCTTCCACATaGTGGGTCGTTTTCCATGGGGTTCCTGTGTCCTTC +
Preference number: 6 (lower is better)
Translates to: SSSRRHQTAAST*WVVFHGVPVSF
Trigger: GAAGGACACAGGAACCCCATGGAAAACGACCCAGCATGTGGAAGCTGCTGTCTGATGCCTCCTGGAAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000493526.1
CDS GCA 72 bp CGCCTCCTAATATCGCTGCCAAGGACCAAGAGCCTGTaGCCTTCAACCTCACTGTTCTTAAAGCTTCTCGGC +
Preference number: 6 (lower is better)
Translates to: RLLISLPRTKSL*PSTSLFLKLLG
Trigger: GCCGAGAAGCTTTAAGAACAGTGAGGTTGAAGGGCACAGGCTCTTGGTCCTTGGCAGCGATATTAGGAGGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000392062.7
ENST00000436481.1
ENST00000437454.5
ENST00000443477.5
ENST00000450679.2
ENST00000539613.5
CDS TCA 72 bp ATCTTGGGGTCCAGGAGACTTGCCATTGTCTCTTTATaGCCTGGTTTTCCTCGGTCCCAGAGGCTGGCTTGT +
Preference number: 6 (lower is better)
Translates to: ILGSRRLAIVSL*PGFPRSQRLAC
Trigger: ACAAGCCAGCCTCTGGGACCGAGGAAAACCAGGTCATAAAGAGACAATGGCAAGTCTCCTGGACCCCAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000409053.1
CDS TCA 72 bp TCAGGCTTCCCAGGCATCTGGGTCCTTTGTCTGTTCTaGCCTTTATCTTGGGGTCCAGGAGACTTGCCATTG +
Preference number: 6 (lower is better)
Translates to: SGFPGIWVLCLF*PLSWGPGDLPL
Trigger: CAATGGCAAGTCTCCTGGACCCCAAGATAAAGGTCAGAACAGACAAAGGACCCAGATGCCTGGGAAGCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000409053.1
CDS CCA 72 bp AGGGAAACAGCTCAGCAATGGGAAAACGTACTCAGGTaGTCAGTTTCAGGTATGCTCTCTACGACCCGCCTG +
Preference number: 6 (lower is better)
Translates to: RETAQQWENVLR*SVSGMLSTTRL
Trigger: CAGGCGGGTCGTAGAGAGCATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000423616.1
CDS CCA 72 bp TGGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCTGAACCCAACGGACGC +
Preference number: 6 (lower is better)
Translates to: WENVLRWSVSGI*GDIQTAEPNGR
Trigger: GCGTCCGTTGGGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424132.1
CDS CAA 90 bp AGGAGAGCCATCCTCCCTACCCTTCCTAGGGGACTTCACTCTTTCTaGTCCCTACAGAAGGCAGTAGGACTGTCTACTCAGTCAATTTGG +
Preference number: 6 (lower is better)
Translates to: RRAILPTLPRGLHSF*SLQKAVGLSTQSIW
Trigger: CCAAATTGACTGAGTAGACAGTCCTACTGCCTTCTGTAGGGACAAGAAAGAGTGAAGTCCCCTAGGAAGGGTAGGGAGGATGGCTCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000493526.1
CDS CCA 72 bp GTGGGCTATTTCTGGTATTTCCTCGGTCCCAGAGGCTaGCTTGTAATGCTCTCTCGAGCTGTTCTTCTTCAC +
Preference number: 6 (lower is better)
Translates to: VGYFWYFLGPRG*LVMLSRAVLLH
Trigger: GTGAAGAAGAACAGCTCGAGAGAGCATTACAAGCCAGCCTCTGGGACCGAGGAAATACCAGAAATAGCCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000341329.7
ENST00000392062.7
ENST00000491490.5
ENST00000493526.1
CDS CCA 72 bp TGGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCTGAACGCTCTCTACGA +
Preference number: 6 (lower is better)
Translates to: WENVLRWSVSGI*GDIQTAERSLR
Trigger: TCGTAGAGAGCGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341329.7
CDS CCA 72 bp TCTCTTTATGACCTGGTTTTCCTCGGTCCCAGAGGCTaGCTTGTAATGCTCTCTCGAGCTGTTCTTCTTCAC +
Preference number: 6 (lower is better)
Translates to: SLYDLVFLGPRG*LVMLSRAVLLH
Trigger: GTGAAGAAGAACAGCTCGAGAGAGCATTACAAGCCAGCCTCTGGGACCGAGGAAAACCAGGTCATAAAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000409053.1
CDS TCA 72 bp TTCTCCACACTAAGGCAGGAGCTATACAGTGGCTTCTaGGGGTTCAAGAAGAACCAGATGTTGAGGGCCAAA +
Preference number: 6 (lower is better)
Translates to: FSTLRQELYSGF*GFKKNQMLRAK
Trigger: TTTGGCCCTCAACATCTGGTTCTTCTTGAACCCTCAGAAGCCACTGTATAGCTCCTGCCTTAGTGTGGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000341329.7
ENST00000392062.7
ENST00000423616.1
ENST00000424132.1
ENST00000448992.5
CDS GCA 72 bp GTCTGTTCTGACCTTTATCTTGGGGTCCAGGAGACTTaGCATTGTCTCTTTATGACCTGGTTTTCCTCGGTC +
Preference number: 6 (lower is better)
Translates to: VCSDLYLGVQET*HCLFMTWFSSV
Trigger: GACCGAGGAAAACCAGGTCATAAAGAGACAATGGCAAGTCTCCTGGACCCCAAGATAAAGGTCAGAACAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000409053.1
CDS GCA 72 bp ACACTGGAGGAAAAACCGCTGAAGTTCCTTAGTCTTTaGCTGCCAAAGTACCAAGCCTCGGCTTTGATGTCT +
Preference number: 6 (lower is better)
Translates to: TLEEKPLKFLSL*LPKYQASALMS
Trigger: AGACATCAAAGCCGAGGCTTGGTACTTTGGCAGGCAAAGACTAAGGAACTTCAGCGGTTTTTCCTCCAGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000493526.1
CDS CCA 72 bp AGGGAAACAGCTCAGCAATGGGAAAACGTACTCAGGTaGTCAGTTTCAGGTATCTGGGGAGATATACAGACG +
Preference number: 6 (lower is better)
Translates to: RETAQQWENVLR*SVSGIWGDIQT
Trigger: CGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000341329.7
ENST00000392062.7
ENST00000424132.1
ENST00000436481.1
ENST00000437454.5
ENST00000443477.5
ENST00000448992.5
CDS CCA 72 bp GTTGCATGGCCAGATATCAGGGAAACAGCTCAGCAATaGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATC +
Preference number: 6 (lower is better)
Translates to: VAWPDIRETAQQ*ENVLRWSVSGI
Trigger: GATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCTGATATCTGGCCATGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000341329.7
ENST00000392062.7
ENST00000424132.1
ENST00000436481.1
ENST00000437454.5
ENST00000443477.5
ENST00000448992.5
CDS CCA 72 bp GTTGCATGGCCAGATATCAGGGAAACAGCTCAGCAATaGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATG +
Preference number: 6 (lower is better)
Translates to: VAWPDIRETAQQ*ENVLRWSVSGM
Trigger: CATACCTGAAACTGACCACCTGAGTACGTTTTCCCATTGCTGAGCTGTTTCCCTGATATCTGGCCATGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000423616.1
CDS TCA 72 bp TTAGTCTTTGCCTGCCAAAGTACCAAGCCTCGGCTTTaGTGTCTCTGTACAAGCAGAGACACTCTGGCTAAA +
Preference number: 6 (lower is better)
Translates to: LVFACQSTKPRL*CLCTSRDTLAK
Trigger: TTTAGCCAGAGTGTCTCTGCTTGTACAGAGACATCAAAGCCGAGGCTTGGTACTTTGGCAGGCAAAGACTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000493526.1
CDS CCA 72 bp TGGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCTGAACCTTCTCAACAT +
Preference number: 6 (lower is better)
Translates to: WENVLRWSVSGI*GDIQTAEPSQH
Trigger: ATGTTGAGAAGGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448992.5
CDS CCA 72 bp TGGGAAAACGTACTCAGGTGGTCAGTTTCAGGTATCTaGGGAGATATACAGACGGCTGAACCAGAATTCTTA +
Preference number: 6 (lower is better)
Translates to: WENVLRWSVSGI*GDIQTAEPEFL
Trigger: TAAGAATTCTGGTTCAGCCGTCTGTATATCTCCCCAGATACCTGAAACTGACCACCTGAGTACGTTTTCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000392062.7
ENST00000436481.1
ENST00000437454.5
ENST00000443477.5
CDS GCA 72 bp AGAATAAGTCCAGTATTTATCCCTCTTGATCTCCGTTaGATGGCCAGATATCAGGGAAACAGCTCAGCAATG +
Preference number: 6 (lower is better)
Translates to: RISPVFIPLDLR*MARYQGNSSAM
Trigger: CATTGCTGAGCTGTTTCCCTGATATCTGGCCATGCAACGGAGATCAAGAGGGATAAATACTGGACTTATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000341329.7
ENST00000392062.7
ENST00000423616.1
ENST00000424132.1
ENST00000436481.1
ENST00000437454.5
ENST00000448992.5
CDS CCA 72 bp CTGTTTAAGAGGCTCCCTCTGGTCTTTACCAAATTCTaGGTCAAAGAAGGTATAACTAAACTGAAGACGAGG +
Preference number: 6 (lower is better)
Translates to: LFKRLPLVFTKF*VKEGITKLKTR
Trigger: CCTCGTCTTCAGTTTAGTTATACCTTCTTTGACCCAGAATTTGGTAAAGACCAGAGGGAGCCTCTTAAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000450679.2
CDS GCA 72 bp GAATTCTTAATACCATTACGTTTTAGGTATAGCTCATaGCCTGAGGATTTCTATTCCACCACAGAGTTTCAC +
Preference number: 6 (lower is better)
Translates to: EFLIPLRFRYSS*PEDFYSTTEFH
Trigger: GTGAAACTCTGTGGTGGAATAGAAATCCTCAGGGCATGAGCTATACCTAAAACGTAATGGTATTAAGAATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000392062.7
ENST00000436481.1
ENST00000437454.5
ENST00000443477.5
ENST00000539613.5
CDS TCA 72 bp AACTTGGGGTTGCTTCTGTTCACATTAAAATTAACATaGACTTCCAAGCTGTTGTCATGCCAAAGGTGTTTT +
Preference number: 6 (lower is better)
Translates to: NLGLLLFTLKLT*TSKLLSCQRCF
Trigger: AAAACACCTTTGGCATGACAACAGCTTGGAAGTTCATGTTAATTTTAATGTGAACAGAAGCAACCCCAAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000491490.5