Pregenerated sensors for RGCC (Homo sapiens)
Ensembl gene IDs: ENSG00000102760Ensembl transcript IDs: ENST00000379359.4
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATATGCTGCAAGCAGGTAAACAAAGTCAGTTTCACTGTCTAAATTaGCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGA | + |
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Preference number: 1 (lower is better) Translates to: NMLQAGKQSQFHCLN*PEMGSRADFKVSLR Trigger: TCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCAATTTAGACAGTGAAACTGACTTTGTTTACCTGCTTGCAGCATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| 3UTR-3UTR TCA 90 bp | TGTCTAAATTGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGAGGCCTGGTAGAAGGTTaGGTGCACGTCTTTGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: CLNCPEMGSRADFKVSLRGLVEG*VHVFVP Trigger: GGGGACAAAGACGTGCACTCAACCTTCTACCAGGCC...TCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCAATTTAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CCA 90 bp | TGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGAGTGGCCTGGCGGCGCGCGTGGCCTTaGGTCCTGCGAGGTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: CPEMGSRADFKVSLRVAWRRAWP*VLRGGS Trigger: GCTGCCACCTCGCAGGACCCAAGGCCACGCGCGCCG...CCAGGCCACTCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR TCA 90 bp | ATTTTAGCAGGTCCTCGGAACTTTCTGAAGCTTCTCCCTTATGATGAAAGGACCCCGCGGGCGGCTTCATaGGGCGGCTCAGCTGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: ILAGPRNFLKLLPYDERTPRAAS*GGSAGP Trigger: GGGCCCAGCTGAGCCGCCTCATGAAGCCGCCCGCGG...GGTCCTTTCATCATAAGGGAGAAGCTTCAGAAAGTTCCGAGGACCTGCTAAAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR GCA 90 bp | TGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGAGTGGCCTGGTGCTGCGCCGCTTCATaGGCTCCAGGTGCTCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: CPEMGSRADFKVSLRVAWCCAAS*APGAPR Trigger: ACGAGGAGCACCTGGAGCGCATGAAGCGGCGCAGCA...CCAGGCCACTCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CCA 90 bp | TGTCTAAATTGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGAATGAGGCGGCTCAGCTaGGCCCGGCGCGCGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: CLNCPEMGSRADFKVSLRMRRLS*ARRAWP Trigger: AGGCCACGCGCGCCGGGCCCAGCTGAGCCGCCTCAT...TCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCAATTTAGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR GCA 90 bp | ATATTAGCATGGATCGTCTGTTCTAATATGCTGCAAGCAGGTAAACAAAGTCAGCAGTCCCTTCGGCGCTaGGCTCCAGCCGCGCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: ILAWIVCSNMLQAGKQSQQSLRR*APAAPL Trigger: GAGCGGCGCGGCTGGAGCGCAGCGCCGAAGGGACTG...CTGACTTTGTTTACCTGCTTGCAGCATATTAGAACAGACGATCCATGCTAATAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR GCA 90 bp | TGTCTAAATTGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGACGCACACTTCAGCCCTaGCAGTCCCTTCGGCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: CLNCPEMGSRADFKVSLRRTLQP*QSLRRC Trigger: GCAGCGCCGAAGGGACTGGCAGGGCTGAAGTGTGCG...TCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCAATTTAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CCA 90 bp | TTAGCATGGATCGTCTGTTCTAATATGCTGCAAGCAGGTAAACAAAGTCAGTTTTGGGCCCGGCGCGCGTaGCCTTGGGTCCTGCGAGGT | + |
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Preference number: 4 (lower is better) Translates to: LAWIVCSNMLQAGKQSQFWARRA*PWVLRG Trigger: ACCTCGCAGGACCCAAGGCCACGCGCGCCGGGCCCA...AAACTGACTTTGTTTACCTGCTTGCAGCATATTAGAACAGACGATCCATGCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CCA 90 bp | ATTTTAGCAGGTCCTCGGAACTTTCTGAAGCTTCTCCCTTATGATGAAAGGACCTGGAAGTGGCGCTCGTaGAAGGGCGACGCGAAGTCG | + |
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Preference number: 4 (lower is better) Translates to: ILAGPRNFLKLLPYDERTWKWRS*KGDAKS Trigger: CGACTTCGCGTCGCCCTTCCACGAGCGCCACTTCCA...GGTCCTTTCATCATAAGGGAGAAGCTTCAGAAAGTTCCGAGGACCTGCTAAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR GCA 90 bp | TGTCTAAATTGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGAGGCTATTCGGGGGCTTaGTGTCCCGCACACTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: CLNCPEMGSRADFKVSLRGYSGA*CPAHFS Trigger: GCTGAAGTGTGCGGGACAGCAAGCCCCCGAATAGCC...TCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCAATTTAGACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CCA 90 bp | TTAGCATGGATCGTCTGTTCTAATATGCTGCAAGCAGGTAAACAAAGTCAGTTTTTGGGTCCTGCGAGGTaGCAGCCGGGGCTATTCGGG | + |
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Preference number: 4 (lower is better) Translates to: LAWIVCSNMLQAGKQSQFLGPAR*QPGLFG Trigger: CCCGAATAGCCCCGGCTGCCACCTCGCAGGACCCAA...AAACTGACTTTGTTTACCTGCTTGCAGCATATTAGAACAGACGATCCATGCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR TCA 90 bp | CTTTGTCCCCTCTGGCAGCAGATTCTAGTAGCTGATTTTAGCAGGTCCTCGGAAGCTGTTCCTATAAAGTaGATCTGCACTCTCCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: LCPLWQQILVADFSRSSEAVPIK*ICTLRV Trigger: GACTCGGAGAGTGCAGATTCACTTTATAGGAACAGC...TTCCGAGGACCTGCTAAAATCAGCTACTAGAATCTGCTGCCAGAGGGGACAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR TCA 90 bp | CTTTGTCCCCTCTGGCAGCAGATTCTAGTAGCTGATTTTAGCAGGTCCTCGGAAGTCCTCGGAACTTTCTaGAGCTTCTCCCTTATGATG | + |
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Preference number: 4 (lower is better) Translates to: LCPLWQQILVADFSRSSEVLGTF*SFSLMM Trigger: CATCATAAGGGAGAAGCTTCAGAAAGTTCCGAGGAC...TTCCGAGGACCTGCTAAAATCAGCTACTAGAATCTGCTGCCAGAGGGGACAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CCA 90 bp | TGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGAGTGGCCTGGTGGGGTAGAGTCTGTTaGAGAATTCAGTTTTTCATC | + |
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Preference number: 4 (lower is better) Translates to: CPEMGSRADFKVSLRVAWWGRVC*RIQFFI Trigger: GATGAAAAACTGAATTCTCCAACAGACTCTACCCCA...CCAGGCCACTCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR TCA 90 bp | ATATTAGCATGGATCGTCTGTTCTAATATGCTGCAAGCAGGTAAACAAAGTCAGGGCCTGGTAGAAGGTTaGGTGCACGTCTTTGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: ILAWIVCSNMLQAGKQSQGLVEG*VHVFVP Trigger: GGGGACAAAGACGTGCACTCAACCTTCTACCAGGCC...CTGACTTTGTTTACCTGCTTGCAGCATATTAGAACAGACGATCCATGCTAATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CCA 90 bp | TGTCTAAATTGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGACGTCTTTGTCCCCTCTaGCAGCAGATTCTAGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: CLNCPEMGSRADFKVSLRRLCPL*QQILVA Trigger: AGCTACTAGAATCTGCTGCCAGAGGGGACAAAGACG...TCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCAATTTAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR TCA 90 bp | ATTTTAGCAGGTCCTCGGAACTTTCTGAAGCTTCTCCCTTATGATGAAAGGACCCCTAATTTAGCTTTCTaGGGAGTGACAGTGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: ILAGPRNFLKLLPYDERTPNLAF*GVTVAE Trigger: CTCTGCCACTGTCACTCCTCAGAAAGCTAAATTAGG...GGTCCTTTCATCATAAGGGAGAAGCTTCAGAAAGTTCCGAGGACCTGCTAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR GCA 90 bp | CTTTGTCCCCTCTGGCAGCAGATTCTAGTAGCTGATTTTAGCAGGTCCTCGGAATTTCACTGTCTAAATTaGCCAGAAATGGGATCAAGG | + |
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Preference number: 4 (lower is better) Translates to: LCPLWQQILVADFSRSSEFHCLN*PEMGSR Trigger: CCTTGATCCCATTTCTGGGCAATTTAGACAGTGAAA...TTCCGAGGACCTGCTAAAATCAGCTACTAGAATCTGCTGCCAGAGGGGACAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR GCA 90 bp | CTTTGTCCCCTCTGGCAGCAGATTCTAGTAGCTGATTTTAGCAGGTCCTCGGAATCTGTTCTAATATGCTaGAAGCAGGTAAACAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: LCPLWQQILVADFSRSSESVLIC*KQVNKV Trigger: GACTTTGTTTACCTGCTTGCAGCATATTAGAACAGA...TTCCGAGGACCTGCTAAAATCAGCTACTAGAATCTGCTGCCAGAGGGGACAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CCA 90 bp | GCGGGGCTGCCCTGCGCCGCGGGCGGCTTCATGAGGCGGCTCAGCTaGGCCCGGCGCGCGTGGCCTTGGGTCCTGCGAGGTGGCAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: AGLPCAAGGFMRRLS*ARRAWPWVLRGGSR Trigger: CCGGCTGCCACCTCGCAGGACCCAAGGCCACGCGCGCCGGGCCCAGCTGAGCCGCCTCATGAAGCCGCCCGCGGCGCAGGGCAGCCCCGC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CCA 90 bp | GCCGCGGGCGGCTTCATGAGGCGGCTCAGCTGGGCCCGGCGCGCGTaGCCTTGGGTCCTGCGAGGTGGCAGCCGGGGCTATTCGGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: AAGGFMRRLSWARRA*PWVLRGGSRGYSGA Trigger: AGCCCCCGAATAGCCCCGGCTGCCACCTCGCAGGACCCAAGGCCACGCGCGCCGGGCCCAGCTGAGCCGCCTCATGAAGCCGCCCGCGGC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CCA 90 bp | GCGGCTCAGCTGGGCCCGGCGCGCGTGGCCTTGGGTCCTGCGAGGTaGCAGCCGGGGCTATTCGGGGGCTTGCTGTCCCGCACACTTCAG | + |
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Preference number: 5 (lower is better) Translates to: AAQLGPARVALGPAR*QPGLFGGLLSRTLQ Trigger: CTGAAGTGTGCGGGACAGCAAGCCCCCGAATAGCCCCGGCTGCCACCTCGCAGGACCCAAGGCCACGCGCGCCGGGCCCAGCTGAGCCGC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CCA 90 bp | GGCGGCTTCATGAGGCGGCTCAGCTGGGCCCGGCGCGCGTGGCCTTaGGTCCTGCGAGGTGGCAGCCGGGGCTATTCGGGGGCTTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: GGFMRRLSWARRAWP*VLRGGSRGYSGACC Trigger: ACAGCAAGCCCCCGAATAGCCCCGGCTGCCACCTCGCAGGACCCAAGGCCACGCGCGCCGGGCCCAGCTGAGCCGCCTCATGAAGCCGCC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS GCA 90 bp | CAGCCGGGGCTATTCGGGGGCTTGCTGTCCCGCACACTTCAGCCCTaGCAGTCCCTTCGGCGCTGCGCTCCAGCCGCGCCGCTCCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: QPGLFGGLLSRTLQP*QSLRRCAPAAPLPA Trigger: TGCTGGGAGCGGCGCGGCTGGAGCGCAGCGCCGAAGGGACTGGCAGGGCTGAAGTGTGCGGGACAGCAAGCCCCCGAATAGCCCCGGCTG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS GCA 90 bp | TGGCCTTGGGTCCTGCGAGGTGGCAGCCGGGGCTATTCGGGGGCTTaGTGTCCCGCACACTTCAGCCCTGCCAGTCCCTTCGGCGCTGCG | + |
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Preference number: 5 (lower is better) Translates to: WPWVLRGGSRGYSGA*CPAHFSPASPFGAA Trigger: CGCAGCGCCGAAGGGACTGGCAGGGCTGAAGTGTGCGGGACAGCAAGCCCCCGAATAGCCCCGGCTGCCACCTCGCAGGACCCAAGGCCA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CAA 90 bp | TGTCTAAATTGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGACCGGCGCGCGTGGCCTaGGGTCCTGCGAGGTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: CLNCPEMGSRADFKVSLRPARVA*GPARWQ Trigger: CTGCCACCTCGCAGGACCCAAGGCCACGCGCGCCGG...TCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCAATTTAGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CAA 90 bp | TGTCTAAATTGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGAGGGCTATTCGGGGGCTaGCTGTCCCGCACACTTCAG | + |
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Preference number: 5 (lower is better) Translates to: CLNCPEMGSRADFKVSLRGLFGG*LSRTLQ Trigger: CTGAAGTGTGCGGGACAGCAAGCCCCCGAATAGCCC...TCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCAATTTAGACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CAA 90 bp | TGTCTAAATTGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGATGGCCTGGTAGAAGGTaGAGTGCACGTCTTTGTCCC | + |
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Preference number: 5 (lower is better) Translates to: CLNCPEMGSRADFKVSLRWPGRR*SARLCP Trigger: GGGACAAAGACGTGCACTCAACCTTCTACCAGGCCA...TCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCAATTTAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS TCA 90 bp | AGAATTCAGTTTTTCATCACTGAAGCTGAAGCTGTTCCTATAAAGTaGATCTGCACTCTCCGAGTCGCTGAAGCCGCTGCTGTCGCTGAC | + |
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Preference number: 5 (lower is better) Translates to: RIQFFITEAEAVPIK*ICTLRVAEAAAVAD Trigger: GTCAGCGACAGCAGCGGCTTCAGCGACTCGGAGAGTGCAGATTCACTTTATAGGAACAGCTTCAGCTTCAGTGATGAAAAACTGAATTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CAA 90 bp | TGCCCAGAAATGGGATCAAGGGCTGATTTTAAGGTGAGCCTGAGAGTGGCCTGGAGGACCCAGAACTTCTaGTTTCACATACTTGCTAAA | + |
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Preference number: 5 (lower is better) Translates to: CPEMGSRADFKVSLRVAWRTQNF*FHILAK Trigger: TTTAGCAAGTATGTGAAACAAGAAGTTCTGGGTCCT...CCAGGCCACTCTCAGGCTCACCTTAAAATCAGCCCTTGATCCCATTTCTGGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CAA 90 bp | ATATTAGCATGGATCGTCTGTTCTAATATGCTGCAAGCAGGTAAACAAAGTCAGGTTGAGTGCACGTCTTaGTCCCCTCTGGCAGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: ILAWIVCSNMLQAGKQSQVECTS*SPLAAD Trigger: ATCTGCTGCCAGAGGGGACAAAGACGTGCACTCAAC...CTGACTTTGTTTACCTGCTTGCAGCATATTAGAACAGACGATCCATGCTAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS-3UTR CAA 90 bp | ATTTTAGCAGGTCCTCGGAACTTTCTGAAGCTTCTCCCTTATGATGAAAGGACCGTTTCACTGTCTAAATaGCCCAGAAATGGGATCAAG | + |
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Preference number: 5 (lower is better) Translates to: ILAGPRNFLKLLPYDERTVSLSK*PRNGIK Trigger: CTTGATCCCATTTCTGGGCAATTTAGACAGTGAAAC...GGTCCTTTCATCATAAGGGAGAAGCTTCAGAAAGTTCCGAGGACCTGCTAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CCA 72 bp | CCCTGCGCCGCGGGCGGCTTCATGAGGCGGCTCAGCTaGGCCCGGCGCGCGTGGCCTTGGGTCCTGCGAGGT | + |
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Preference number: 6 (lower is better) Translates to: PCAAGGFMRRLS*ARRAWPWVLRG Trigger: ACCTCGCAGGACCCAAGGCCACGCGCGCCGGGCCCAGCTGAGCCGCCTCATGAAGCCGCCCGCGGCGCAGGG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS GCA 72 bp | TCCCGCACACTTCAGCCCTGCCAGTCCCTTCGGCGCTaGGCTCCAGCCGCGCCGCTCCCAGCACGGTCCGCG | + |
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Preference number: 6 (lower is better) Translates to: SRTLQPCQSLRR*APAAPLPARSA Trigger: CGCGGACCGTGCTGGGAGCGGCGCGGCTGGAGCGCAGCGCCGAAGGGACTGGCAGGGCTGAAGTGTGCGGGA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CCA 72 bp | ATGAGGCGGCTCAGCTGGGCCCGGCGCGCGTGGCCTTaGGTCCTGCGAGGTGGCAGCCGGGGCTATTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: MRRLSWARRAWP*VLRGGSRGYSG Trigger: CCCCGAATAGCCCCGGCTGCCACCTCGCAGGACCCAAGGCCACGCGCGCCGGGCCCAGCTGAGCCGCCTCAT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CAA 90 bp | GGGCGGCTTCATGAGGCGGCTCAGCTGGGCCCGGCGCGCGTGGCCTaGGGTCCTGCGAGGTGGCAGCCGGGGCTATTCGGGGGCTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: GRLHEAAQLGPARVA*GPARWQPGLFGGLL Trigger: CAGCAAGCCCCCGAATAGCCCCGGCTGCCACCTCGCAGGACCCAAGGCCACGCGCGCCGGGCCCAGCTGAGCCGCCTCATGAAGCCGCCC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CCA 72 bp | GGCTTCATGAGGCGGCTCAGCTGGGCCCGGCGCGCGTaGCCTTGGGTCCTGCGAGGTGGCAGCCGGGGCTAT | + |
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Preference number: 6 (lower is better) Translates to: GFMRRLSWARRA*PWVLRGGSRGY Trigger: ATAGCCCCGGCTGCCACCTCGCAGGACCCAAGGCCACGCGCGCCGGGCCCAGCTGAGCCGCCTCATGAAGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS GCA 72 bp | CTATTCGGGGGCTTGCTGTCCCGCACACTTCAGCCCTaGCAGTCCCTTCGGCGCTGCGCTCCAGCCGCGCCG | + |
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Preference number: 6 (lower is better) Translates to: LFGGLLSRTLQP*QSLRRCAPAAP Trigger: CGGCGCGGCTGGAGCGCAGCGCCGAAGGGACTGGCAGGGCTGAAGTGTGCGGGACAGCAAGCCCCCGAATAG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CAA 90 bp | GTGGCCTTGGGTCCTGCGAGGTGGCAGCCGGGGCTATTCGGGGGCTaGCTGTCCCGCACACTTCAGCCCTGCCAGTCCCTTCGGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VALGPARWQPGLFGG*LSRTLQPCQSLRRC Trigger: GCAGCGCCGAAGGGACTGGCAGGGCTGAAGTGTGCGGGACAGCAAGCCCCCGAATAGCCCCGGCTGCCACCTCGCAGGACCCAAGGCCAC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS GCA 72 bp | GTCCTGCGAGGTGGCAGCCGGGGCTATTCGGGGGCTTaGTGTCCCGCACACTTCAGCCCTGCCAGTCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: VLRGGSRGYSGA*CPAHFSPASPF Trigger: GAAGGGACTGGCAGGGCTGAAGTGTGCGGGACAGCAAGCCCCCGAATAGCCCCGGCTGCCACCTCGCAGGAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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| CDS CAA 72 bp | GGTCCTGCGAGGTGGCAGCCGGGGCTATTCGGGGGCTaGCTGTCCCGCACACTTCAGCCCTGCCAGTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: GPARWQPGLFGG*LSRTLQPCQSL Trigger: AAGGGACTGGCAGGGCTGAAGTGTGCGGGACAGCAAGCCCCCGAATAGCCCCGGCTGCCACCTCGCAGGACC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379359.4 |
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