Pregenerated sensors for RFK (Homo sapiens)
Ensembl gene IDs: ENSG00000135002Ensembl transcript IDs: ENST00000376736.6, ENST00000472900.5, ENST00000479197.1, ENST00000483155.5
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCACCAGTGGCCGGACGACGCCGACCACAGGCCACTGCGAATCCCTaGCGCCGCCGACCCAACAAATACCGCCGGGCGCCTGAGGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: APVAGRRRPQATANP*RRRPNKYRRAPEEL Trigger: CAGCTCCTCAGGCGCCCGGCGGTATTTGTTGGGTCGGCGGCGTCAGGGATTCGCAGTGGCCTGTGGTCGGCGTCGTCCGGCCACTGGTGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000376736.6 ENST00000472900.5 ENST00000479197.1 |
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| CDS TCA 90 bp | TGCGAATCCCTGACGCCGCCGACCCAACAAATACCGCCGGGCGCCTaGGGAGCTGCGTCTCCGCTGGAGGGCAGCGGAGACAGCCGAAGT | + |
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Preference number: 5 (lower is better) Translates to: CESLTPPTQQIPPGA*GAASPLEGSGDSRS Trigger: ACTTCGGCTGTCTCCGCTGCCCTCCAGCGGAGACGCAGCTCCTCAGGCGCCCGGCGGTATTTGTTGGGTCGGCGGCGTCAGGGATTCGCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000376736.6 ENST00000472900.5 ENST00000479197.1 |
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| CDS CCA 90 bp | CGACCCAACAAATACCGCCGGGCGCCTGAGGAGCTGCGTCTCCGCTaGAGGGCAGCGGAGACAGCCGAAGTAAGTGCCGGGTGTGAGCGG | + |
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Preference number: 5 (lower is better) Translates to: RPNKYRRAPEELRLR*RAAETAEVSAGCER Trigger: CCGCTCACACCCGGCACTTACTTCGGCTGTCTCCGCTGCCCTCCAGCGGAGACGCAGCTCCTCAGGCGCCCGGCGGTATTTGTTGGGTCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472900.5 ENST00000479197.1 |
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| CDS TCA 72 bp | CTGACGCCGCCGACCCAACAAATACCGCCGGGCGCCTaGGGAGCTGCGTCTCCGCTGGAGGGCAGCGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: LTPPTQQIPPGA*GAASPLEGSGD Trigger: GTCTCCGCTGCCCTCCAGCGGAGACGCAGCTCCTCAGGCGCCCGGCGGTATTTGTTGGGTCGGCGGCGTCAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000376736.6 ENST00000472900.5 ENST00000479197.1 |
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| CDS TCA 72 bp | GCCGGACGACGCCGACCACAGGCCACTGCGAATCCCTaGCGCCGCCGACCCAACAAATACCGCCGGGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: AGRRRPQATANP*RRRPNKYRRAP Trigger: AGGCGCCCGGCGGTATTTGTTGGGTCGGCGGCGTCAGGGATTCGCAGTGGCCTGTGGTCGGCGTCGTCCGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000376736.6 ENST00000472900.5 ENST00000479197.1 |
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| CDS GCA 72 bp | GCCGACCCAACAAATACCGCCGGGCGCCTGAGGAGCTaGGTCTCCGCTGGAGGGCAGCGGAGACAGCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: ADPTNTAGRLRS*VSAGGQRRQPK Trigger: CTTCGGCTGTCTCCGCTGCCCTCCAGCGGAGACGCAGCTCCTCAGGCGCCCGGCGGTATTTGTTGGGTCGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000376736.6 ENST00000472900.5 ENST00000479197.1 |
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| CDS CCA 72 bp | AAATACCGCCGGGCGCCTGAGGAGCTGCGTCTCCGCTaGAGGGCAGCGGAGACAGCCGAAGTAAGTGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: KYRRAPEELRLR*RAAETAEVSAG Trigger: CCCGGCACTTACTTCGGCTGTCTCCGCTGCCCTCCAGCGGAGACGCAGCTCCTCAGGCGCCCGGCGGTATTT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472900.5 ENST00000479197.1 |
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| CDS GCA 72 bp | AGCTTGGCTGGCCAAGGAGGCGTGAACGGGGAATCCTaGGATTCATCTCGGGCTTCCGGCCCTCACCACCCC | + |
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Preference number: 6 (lower is better) Translates to: SLAGQGGVNGES*DSSRASGPHHP Trigger: GGGGTGGTGAGGGCCGGAAGCCCGAGATGAATCGCAGGATTCCCCGTTCACGCCTCCTTGGCCAGCCAAGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483155.5 |
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| CDS TCA 72 bp | TGCTCAGGAAAATTAGCTTGGCTGGCCAAGGAGGCGTaGACGGGGAATCCTGCGATTCATCTCGGGCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: CSGKLAWLAKEA*TGNPAIHLGLP Trigger: CGGAAGCCCGAGATGAATCGCAGGATTCCCCGTTCACGCCTCCTTGGCCAGCCAAGCTAATTTTCCTGAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000483155.5 |
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| CDS CCA 72 bp | ATGTTTGTTCCATCACTCCTTCCAGGCCTAAGTCAATaGTACACAAAAGATATGTCCCTAGGCCGGGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: MFVPSLLPGLSQ*YTKDMSLGRGQ Trigger: CTGCCCCCGGCCTAGGGACATATCTTTTGTGTACCATTGACTTAGGCCTGGAAGGAGTGATGGAACAAACAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000479197.1 |
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| CDS CAA 90 bp | AGCCTGCTAGGTTCAAAGCTAGACTCCGTTATTTACTATGTGACTTaGAGAATGTTACTTAATCTCTCTGTGCCATTTCCTCATCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: SLLGSKLDSVIYYVT*RMLLNLSVPFPHLR Trigger: TCTCAGATGAGGAAATGGCACAGAGAGATTAAGTAACATTCTCAAAGTCACATAGTAAATAACGGAGTCTAGCTTTGAACCTAGCAGGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000479197.1 |
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| CDS CAA 72 bp | GGTTCAAAGCTAGACTCCGTTATTTACTATGTGACTTaGAGAATGTTACTTAATCTCTCTGTGCCATTTCCT | + |
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Preference number: 6 (lower is better) Translates to: GSKLDSVIYYVT*RMLLNLSVPFP Trigger: AGGAAATGGCACAGAGAGATTAAGTAACATTCTCAAAGTCACATAGTAAATAACGGAGTCTAGCTTTGAACC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000479197.1 |
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