Pregenerated sensors for RFESD (Homo sapiens)
Ensembl gene IDs: ENSG00000175449Ensembl transcript IDs: ENST00000311364.8, ENST00000380005.9, ENST00000458310.1, ENST00000504893.1, ENST00000506212.1, ENST00000508206.1
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTATCTATAAAAAGCCCAAGTCTGGTTCGTTGGTTGTCTGAGAAATaGGGACCAAGTGCTACTCATGCTATCCAAACTCCAACAGAAAAG | + |
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Preference number: 1 (lower is better) Translates to: VSIKSPSLVRWLSEK*GPSATHAIQTPTEK Trigger: CTTTTCTGTTGGAGTTTGGATAGCATGAGTAGCACTTGGTCCTCATTTCTCAGACAACCAACGAACCAGACTTGGGCTTTTTATAGATAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR TCA 90 bp | ACAAACAGTATCTATAAAAAGCCCAAGTCTGGTTCGTTGGTTGTCTaGGAAATGAGGACCAAGTGCTACTCATGCTATCCAAACTCCAAC | + |
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Preference number: 1 (lower is better) Translates to: TNSIYKKPKSGSLVV*EMRTKCYSCYPNSN Trigger: GTTGGAGTTTGGATAGCATGAGTAGCACTTGGTCCTCATTTCTCAGACAACCAACGAACCAGACTTGGGCTTTTTATAGATACTGTTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR TCA 90 bp | ATTGAAGGATTATCACATGATAGAATAGACTGGGATGTACCTTCCTaGGAGATAGTACATTTTCTGTACTTAGTAAGTAGCTGCTACCAC | + |
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Preference number: 1 (lower is better) Translates to: IEGLSHDRIDWDVPS*EIVHFLYLVSSCYH Trigger: GTGGTAGCAGCTACTTACTAAGTACAGAAAATGTACTATCTCTCAGGAAGGTACATCCCAGTCTATTCTATCATGTGATAATCCTTCAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR-3UTR CCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGCTGCTGATTTTTGCATaGTGGGTGCTTGGGGTGTTA | + |
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Preference number: 2 (lower is better) Translates to: GPYSFTIFIITKRKSPGRLLIFA*WVLGVL Trigger: TAACACCCCAAGCACCCACCATGCAAAAATCAGCAG...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR-3UTR GCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGCCTTACTTCAAGATCTaGCTTGATCACAGATCACTT | + |
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Preference number: 2 (lower is better) Translates to: GPYSFTIFIITKRKSPGRPYFKI*LDHRSL Trigger: AAGTGATCTGTGATCAAGGCAGATCTTGAAGTAAGG...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR-3UTR TCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGCCTCTCAAATGTATGTaGATTTTAAACAGTTGTGCC | + |
|
Preference number: 2 (lower is better) Translates to: GPYSFTIFIITKRKSPGRPLKCM*ILNSCA Trigger: GGCACAACTGTTTAAAATTCACATACATTTGAGAGG...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR-3UTR TCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGCAGTTCTTCTCACTCTaGATTCATCATCTACTCATT | + |
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Preference number: 2 (lower is better) Translates to: GPYSFTIFIITKRKSPGRQFFSL*IHHLLI Trigger: AATGAGTAGATGATGAATTCAGAGTGAGAAGAACTG...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR TCA 72 bp | AAAAGCCCAAGTCTGGTTCGTTGGTTGTCTGAGAAATaGGGACCAAGTGCTACTCATGCTATCCAAACTCCA | + |
|
Preference number: 3 (lower is better) Translates to: KSPSLVRWLSEK*GPSATHAIQTP Trigger: TGGAGTTTGGATAGCATGAGTAGCACTTGGTCCTCATTTCTCAGACAACCAACGAACCAGACTTGGGCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR TCA 72 bp | ATCTATAAAAAGCCCAAGTCTGGTTCGTTGGTTGTCTaGGAAATGAGGACCAAGTGCTACTCATGCTATCCA | + |
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Preference number: 3 (lower is better) Translates to: IYKKPKSGSLVV*EMRTKCYSCYP Trigger: TGGATAGCATGAGTAGCACTTGGTCCTCATTTCTCAGACAACCAACGAACCAGACTTGGGCTTTTTATAGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR-3UTR CAA 90 bp | TCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATAGGAGACACTTAACTTCAAGATCTGCCTaGATCACAGATCACTTAACA | + |
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Preference number: 3 (lower is better) Translates to: SKEQNPRSPLYNIYRRHLTSRSA*ITDHLT Trigger: TGTTAAGTGATCTGTGATCAAGGCAGATCTTGAAGT...TAAGTGTCTCCTATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR TCA 72 bp | GGGTGTTATTTTAAATACATTACAACTGGTACGGTATaGCCATCATTGCAACTGAATGGTACTGACCATAAA | + |
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Preference number: 3 (lower is better) Translates to: GCYFKYITTGTV*PSLQLNGTDHK Trigger: TTTATGGTCAGTACCATTCAGTTGCAATGATGGTCATACCGTACCAGTTGTAATGTATTTAAAATAACACCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR TCA 72 bp | TTATCACATGATAGAATAGACTGGGATGTACCTTCCTaGGAGATAGTACATTTTCTGTACTTAGTAAGTAGC | + |
|
Preference number: 3 (lower is better) Translates to: LSHDRIDWDVPS*EIVHFLYLVSS Trigger: GCTACTTACTAAGTACAGAAAATGTACTATCTCTCAGGAAGGTACATCCCAGTCTATTCTATCATGTGATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| 3UTR TCA 72 bp | TCTGTACACTTTATATTCTGGACATGTGTTAAGACCTaGCTGGGCATTGAAGGATTATCACATGATAGAATA | + |
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Preference number: 3 (lower is better) Translates to: SVHFIFWTCVKT*LGIEGLSHDRI Trigger: TATTCTATCATGTGATAATCCTTCAATGCCCAGTCAGGTCTTAACACATGTCCAGAATATAAAGTGTACAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGACCACTATGTGCTGCTaGTTTTTGCATGGTGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GPYSFTIFIITKRKSPGRTTMCC*FLHGGC Trigger: GCACCCACCATGCAAAAATCAGCAGCACATAGTGGT...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR GCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATAACTGAACATCAACCTTaGTCGGGAACTCCAAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFITEHQP*SGTPRN Trigger: GTTCCTTGGAGTTCCCGAGCAAGGTTGATGTTCAGT...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR CCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATACTGCTGATTTTTGCATaGTGGGTGCTTGGGGTGTTA | + |
|
Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFILLIFA*WVLGVL Trigger: TAACACCCCAAGCACCCACCATGCAAAAATCAGCAG...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATATGGTTGTCTGAGAAATaGGGACCAAGTGCTACTCAT | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFIWLSEK*GPSATH Trigger: ATGAGTAGCACTTGGTCCTCATTTCTCAGACAACCA...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATAGGAGACACTTAGGTTCGTTGGTTGTCTaGGAAATGAGGACCAAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SKEQNPRSPLYNIYRRHLGSLVV*EMRTKC Trigger: GCACTTGGTCCTCATTTCTCAGACAACCAACGAACC...TAAGTGTCTCCTATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGTGCCCAAAATGCAAATaGACTAGACATGCCAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: GPYSFTIFIITKRKSPGRCPKCK*TRHANS Trigger: GCTGTTGGCATGTCTAGTTCATTTGCATTTTGGGCA...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATATGGGATGTACCTTCCTaGGAGATAGTACATTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFIWDVPS*EIVHFL Trigger: CAGAAAATGTACTATCTCTCAGGAAGGTACATCCCA...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR GCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATACATAGTGGTGATTTTTaGATGAGCACTGACCATGCA | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFIHSGDF*MSTDHA Trigger: TGCATGGTCAGTGCTCATGCAAAAATCACCACTATG...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR CCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATACTGATTTTTGCATGGTaGGTGCTTGGGGTGTTATTT | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFILIFAW*VLGVLF Trigger: AAATAACACCCCAAGCACCCACCATGCAAAAATCAG...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATACTGACCATAAATAACTaGCATGATAAAACCAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFILTINN*HDKTRV Trigger: CACCCTGGTTTTATCATGTCAGTTATTTATGGTCAG...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATAGACCATCATTGCAACTaGATGGTACTGACCATAAAT | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFIDHHCN*MVLTIN Trigger: ATTTATGGTCAGTACCATTCAGTTGCAATGATGGTC...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR GCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATACCTTACTTCAAGATCTaGCTTGATCACAGATCACTT | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFIPYFKI*LDHRSL Trigger: AAGTGATCTGTGATCAAGGCAGATCTTGAAGTAAGG...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR GCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGACCAAGTGCTACTCATaGTATCCAAACTCCAACAGA | + |
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Preference number: 4 (lower is better) Translates to: GPYSFTIFIITKRKSPGRTKCYS*YPNSNR Trigger: TCTGTTGGAGTTTGGATAGCATGAGTAGCACTTGGT...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR CCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGGACATGCCAACAGCTTaGGGAAGAGAATTCCATATT | + |
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Preference number: 4 (lower is better) Translates to: GPYSFTIFIITKRKSPGRDMPTA*GREFHI Trigger: AATATGGAATTCTCTTCCCCAAGCTGTTGGCATGTC...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR CCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGGTGTTAAGACCTGACTaGGCATTGAAGGATTATCAC | + |
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Preference number: 4 (lower is better) Translates to: GPYSFTIFIITKRKSPGRVLRPD*ALKDYH Trigger: GTGATAATCCTTCAATGCCCAGTCAGGTCTTAACAC...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATACCTCTCAAATGTATGTaGATTTTAAACAGTTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFIPLKCM*ILNSCA Trigger: GGCACAACTGTTTAAAATTCACATACATTTGAGAGG...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATAGGAGACACTTAACAACTGGTACGGTATaGCCATCATTGCAACTGAAT | + |
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Preference number: 4 (lower is better) Translates to: SKEQNPRSPLYNIYRRHLTTGTV*PSLQLN Trigger: ATTCAGTTGCAATGATGGTCATACCGTACCAGTTGT...TAAGTGTCTCCTATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATACAGTTCTTCTCACTCTaGATTCATCATCTACTCATT | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFIQFFSL*IHHLLI Trigger: AATGAGTAGATGATGAATTCAGAGTGAGAAGAACTG...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATAGGAGACACTTAACATGTGTTAAGACCTaGCTGGGCATTGAAGGATTA | + |
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Preference number: 4 (lower is better) Translates to: SKEQNPRSPLYNIYRRHLTCVKT*LGIEGL Trigger: TAATCCTTCAATGCCCAGTCAGGTCTTAACACATGT...TAAGTGTCTCCTATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR TCA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATATGCCAGTGGCTCCTATaGGAAAATATTTCTGTAATT | + |
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Preference number: 4 (lower is better) Translates to: CSGTPRNKTLDLLSIIFICQWLL*ENISVI Trigger: AATTACAGAAATATTTTCTCATAGGAGCCACTGGCA...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR GCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGTACTTAGTAAGTAGCTaGTACCACAAACAGTATCTA | + |
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Preference number: 4 (lower is better) Translates to: GPYSFTIFIITKRKSPGRYLVSS*YHKQYL Trigger: TAGATACTGTTTGTGGTAGCAGCTACTTACTAAGTA...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR CCA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGAAGAGAATTCCATATTaGAGAGGAAGTGTAGATAAG | + |
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Preference number: 4 (lower is better) Translates to: GPYSFTIFIITKRKSPGRKRIPY*RGSVDK Trigger: CTTATCTACACTTCCTCTCCAATATGGAATTCTCTT...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS TCA 90 bp | CTGGTCACTGAGATGACAGCTGAGCTGAAATGCCCAAAATGCAAATaGACTAGACATGCCAACAGCTTGGGGAAGAGAATTCCATATTGG | + |
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Preference number: 5 (lower is better) Translates to: LVTEMTAELKCPKCK*TRHANSLGKRIPYW Trigger: CCAATATGGAATTCTCTTCCCCAAGCTGTTGGCATGTCTAGTTCATTTGCATTTTGGGCATTTCAGCTCAGCTGTCATCTCAGTGACCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000380005.9 ENST00000458310.1 |
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| CDS GCA 90 bp | TTTAAGAAGGGCCCGCCACATAGGGGTGTGGGTAAAGCACATAAATaGTTTAACACATGTCAAATGTTTAGAGCAGGCCTAACCGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: FKKGPPHRGVGKAHK*FNTCQMFRAGLTAE Trigger: TTCTGCGGTTAGGCCTGCTCTAAACATTTGACATGTGTTAAAGCATTTATGTGCTTTACCCACACCCCTATGTGGCGGGCCCTTCTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000311364.8 ENST00000458310.1 |
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| CDS-3UTR CAA 90 bp | TGCTCGGGAACTCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATAAGACATGCCAACAGCTaGGGGAAGAGAATTCCATAT | + |
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Preference number: 5 (lower is better) Translates to: CSGTPRNKTLDLLSIIFIRHANS*GKRIPY Trigger: ATATGGAATTCTCTTCCCCAAGCTGTTGGCATGTCT...TATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGAGTTCCCGAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR CAA 90 bp | TCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATAGGAGACACTTAGCACACTACTCATTATaGCCAGTGGCTCCTATGAGA | + |
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Preference number: 5 (lower is better) Translates to: SKEQNPRSPLYNIYRRHLAHYSL*PVAPMR Trigger: TCTCATAGGAGCCACTGGCAATAATGAGTAGTGTGC...TAAGTGTCTCCTATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR CAA 90 bp | GGACCTTACTCATTTACTATTTTTATAATAACCAAGAGAAAGAGTCCAGGTCGGAGACCTGACTGGGCATaGAAGGATTATCACATGATA | + |
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Preference number: 5 (lower is better) Translates to: GPYSFTIFIITKRKSPGRRPDWA*KDYHMI Trigger: TATCATGTGATAATCCTTCAATGCCCAGTCAGGTCT...CCGACCTGGACTCTTTCTCTTGGTTATTATAAAAATAGTAAATGAGTAAGGTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS-3UTR CAA 90 bp | TCCAAGGAACAAAACCCTAGATCTCCTCTCTATAATATTTATAGGAGACACTTAAAATACTACTGTGCTTaGAGACTAGGTTCCAATCTT | + |
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Preference number: 5 (lower is better) Translates to: SKEQNPRSPLYNIYRRHLKYYCA*RLGSNL Trigger: AAGATTGGAACCTAGTCTCAAAGCACAGTAGTATTT...TAAGTGTCTCCTATAAATATTATAGAGAGGAGATCTAGGGTTTTGTTCCTTGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380005.9 |
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| CDS TCA 72 bp | GCCTCAGGCCCCGCAGCGGCGCGGCCACAGCCGGAATaGGGAGTCCACGCCCGCAGCCCAGCCGGAAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: ASGPAAARPQPE*GVHARSPAGSS Trigger: GCTGCTTCCGGCTGGGCTGCGGGCGTGGACTCCTCATTCCGGCTGTGGCCGCGCCGCTGCGGGGCCTGAGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311364.8 |
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| CDS TCA 72 bp | AGTGAGCTAGACCTGGGTTTGCATCCCAGTTCTGCGTaGTTTGGGGCAAGTTGCTTAACTTCGCTGTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SELDLGLHPSSA*FGASCLTSLCC Trigger: GCAGCACAGCGAAGTTAAGCAACTTGCCCCAAATCACGCAGAACTGGGATGCAAACCCAGGTCTAGCTCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000311364.8 ENST00000458310.1 |
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| CDS CCA 72 bp | GCTAGACCTGGGTTTGCATCCCAGTTCTGCGTGATTTaGGGCAAGTTGCTTAACTTCGCTGTGCTGCAGTTT | + |
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Preference number: 6 (lower is better) Translates to: ARPGFASQFCVI*GKLLNFAVLQF Trigger: AAACTGCAGCACAGCGAAGTTAAGCAACTTGCCCCAAATCACGCAGAACTGGGATGCAAACCCAGGTCTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000311364.8 ENST00000458310.1 |
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| CDS GCA 72 bp | GGCCCGCCACATAGGGGTGTGGGTAAAGCACATAAATaGTTTAACACATGTCAAATGTTTAGAGCAGGCCTA | + |
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Preference number: 6 (lower is better) Translates to: GPPHRGVGKAHK*FNTCQMFRAGL Trigger: TAGGCCTGCTCTAAACATTTGACATGTGTTAAAGCATTTATGTGCTTTACCCACACCCCTATGTGGCGGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000311364.8 ENST00000458310.1 |
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| CDS CAA 72 bp | GGGTTTGCATCCCAGTTCTGCGTGATTTGGGGCAAGTaGCTTAACTTCGCTGTGCTGCAGTTTCTTTTACTT | + |
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Preference number: 6 (lower is better) Translates to: GFASQFCVIWGK*LNFAVLQFLLL Trigger: AAGTAAAAGAAACTGCAGCACAGCGAAGTTAAGCAACTTGCCCCAAATCACGCAGAACTGGGATGCAAACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000311364.8 ENST00000458310.1 |
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| CDS CCA 72 bp | TCCATCACCGTCTGTCATTTTTCACCACTCTACTTCTaGGGAGAGGGCTCTGAAGGTGTCTTTCAAATATCT | + |
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Preference number: 6 (lower is better) Translates to: SITVCHFSPLYF*GEGSEGVFQIS Trigger: AGATATTTGAAAGACACCTTCAGAGCCCTCTCCCCAGAAGTAGAGTGGTGAAAAATGACAGACGGTGATGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000508206.1 |
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| CDS TCA 72 bp | GAGATGACAGCTGAGCTGAAATGCCCAAAATGCAAATaGACTAGACATGCCAACAGCTTGGGGAAGAGAATT | + |
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Preference number: 6 (lower is better) Translates to: EMTAELKCPKCK*TRHANSLGKRI Trigger: AATTCTCTTCCCCAAGCTGTTGGCATGTCTAGTTCATTTGCATTTTGGGCATTTCAGCTCAGCTGTCATCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000380005.9 ENST00000458310.1 |
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| CDS TCA 72 bp | GTAGTGCCAAAGACTGTGAGGAGAAAGGCCAAGAAATaGATGGTATTTTTGCAGAATGGAAAATCAAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: VVPKTVRRKAKK*MVFLQNGKSRA Trigger: AGCTCTTGATTTTCCATTCTGCAAAAATACCATTCATTTCTTGGCCTTTCTCCTCACAGTCTTTGGCACTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000504893.1 ENST00000506212.1 |
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| CDS GCA 72 bp | AGTGGCATATTTGGAGGGGACAGTGGATCACATATTTaGTCAGAAACCACTGATAGTAGCTTACTAAATTCT | + |
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Preference number: 6 (lower is better) Translates to: SGIFGGDSGSHI*SETTDSSLLNS Trigger: AGAATTTAGTAAGCTACTATCAGTGGTTTCTGAGCAAATATGTGATCCACTGTCCCCTCCAAATATGCCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508206.1 |
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