Pregenerated sensors for RETNLB (Homo sapiens)

Ensembl gene IDs: ENSG00000163515

Ensembl transcript IDs: ENST00000295755.6, ENST00000295755.7, ENST00000482939.1

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	GTACAAAGTTTGTCTTTATTACCCAAGAATCAGGAATGGAACAAATaGAGTGGGACGTTTGAGTTAGATTTCTTGGTTGGGACCCTGGTT	+
Preference number: 1 (lower is better) Translates to: VQSLSLLPKNQEWNK*SGTFELDFLVGTLV Trigger: AACCAGGGTCCCAACCAAGAAATCTAACTCAAACGTCCCACTTCATTTGTTCCATTCCTGATTCTTGGGTAATAAAGACAAACTTTGTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295755.6
3UTR TCA 72 bp	CAAGAATCAGGAATGGAACAAATGAAGTGGGACGTTTaGGTTAGATTTCTTGGTTGGGACCCTGGTTTCATT	+
Preference number: 3 (lower is better) Translates to: QESGMEQMKWDV*VRFLGWDPGFI Trigger: AATGAAACCAGGGTCCCAACCAAGAAATCTAACTCAAACGTCCCACTTCATTTGTTCCATTCCTGATTCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295755.6
CDS CCA 90 bp	CAGCCTGAGGGATTGCATTCAGCAGGGCAGGAGGACGGTCTGCCTTaGCTTTTGACACTAGCACACGAGAGCTTCTTGCTTATAGGAGAG	+
Preference number: 5 (lower is better) Translates to: QPEGLHSAGQEDGLP*LLTLAHESFLLIGE Trigger: CTCTCCTATAAGCAAGAAGCTCTCGTGTGCTAGTGTCAAAAGCCAAGGCAGACCGTCCTCCTGCCCTGCTGAATGCAATCCCTCAGGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS TCA 90 bp	CTTTTCCATGGCAGTCATTTCCTGATCTGTTGGCCTTGCCACACCTaGGGGGCAGGAGGACAGGTTGCTTTCATTAGTGATGTTGGTTCA	+
Preference number: 5 (lower is better) Translates to: LFHGSHFLICWPCHT*GAGGQVAFISDVGS Trigger: TGAACCAACATCACTAATGAAAGCAACCTGTCCTCCTGCCCCTCAGGTGTGGCAAGGCCAACAGATCAGGAAATGACTGCCATGGAAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS TCA 90 bp	AGAACATCCTTGATCTTCTTATCCATAACGGAGTCTAAGGAACACTaGGTACTCCCCGGGTTGATCAGCTGGAGAAGGGGGATTAGGATG	+
Preference number: 5 (lower is better) Translates to: RTSLIFLSITESKEH*VLPGLISWRRGIRM Trigger: CATCCTAATCCCCCTTCTCCAGCTGATCAACCCGGGGAGTACTCAGTGTTCCTTAGACTCCGTTATGGATAAGAAGATCAAGGATGTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000295755.7
CDS CCA 90 bp	GTTAGTTTCCAGGGAGTAAAGATGGAAGAACAGCGTCATCAGTACTaGATCTCTTTAGGCAGTTTGGAGAAGCAGGTAGGGTTGCTGAAG	+
Preference number: 5 (lower is better) Translates to: VSFQGVKMEEQRHQY*ISLGSLEKQVGLLK Trigger: CTTCAGCAACCCTACCTGCTTCTCCAAACTGCCTAAAGAGATCCAGTACTGATGACGCTGTTCTTCCATCTTTACTCCCTGGAAACTAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295755.7
CDS CCA 90 bp	ACTAGCACACGAGAGCTTCTTGCTTATAGGAGAGGGACTGTACTCTaGTTCATAATGAGTGTTCATAAATTACAGCTACCATTCTCCTCC	+
Preference number: 5 (lower is better) Translates to: TSTRELLAYRRGTVL*FIMSVHKLQLPFSS Trigger: GGAGGAGAATGGTAGCTGTAATTTATGAACACTCATTATGAACCAGAGTACAGTCCCTCTCCTATAAGCAAGAAGCTCTCGTGTGCTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS CAA 72 bp	GGGATTGCATTCAGCAGGGCAGGAGGACGGTCTGCCTaGGCTTTTGACACTAGCACACGAGAGCTTCTTGCT	+
Preference number: 6 (lower is better) Translates to: GIAFSRAGGRSA*AFDTSTRELLA Trigger: AGCAAGAAGCTCTCGTGTGCTAGTGTCAAAAGCCAAGGCAGACCGTCCTCCTGCCCTGCTGAATGCAATCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS CAA 90 bp	GAGGGATTGCATTCAGCAGGGCAGGAGGACGGTCTGCCTTGGCTTTaGACACTAGCACACGAGAGCTTCTTGCTTATAGGAGAGGGACTG	+
Preference number: 6 (lower is better) Translates to: EGLHSAGQEDGLPWL*TLAHESFLLIGEGL Trigger: CAGTCCCTCTCCTATAAGCAAGAAGCTCTCGTGTGCTAGTGTCAAAAGCCAAGGCAGACCGTCCTCCTGCCCTGCTGAATGCAATCCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS TCA 72 bp	AGTGATGTTGGTTCAGGAGAGATGTTTTGGGCAGCCTaGGGGATTGCATTCAGCAGGGCAGGAGGACGGTCT	+
Preference number: 6 (lower is better) Translates to: SDVGSGEMFWAA*GIAFSRAGGRS Trigger: AGACCGTCCTCCTGCCCTGCTGAATGCAATCCCTCAGGCTGCCCAAAACATCTCTCCTGAACCAACATCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS CCA 72 bp	GGATTGCATTCAGCAGGGCAGGAGGACGGTCTGCCTTaGCTTTTGACACTAGCACACGAGAGCTTCTTGCTT	+
Preference number: 6 (lower is better) Translates to: GLHSAGQEDGLP*LLTLAHESFLL Trigger: AAGCAAGAAGCTCTCGTGTGCTAGTGTCAAAAGCCAAGGCAGACCGTCCTCCTGCCCTGCTGAATGCAATCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS TCA 72 bp	GGCAGTCATTTCCTGATCTGTTGGCCTTGCCACACCTaGGGGGCAGGAGGACAGGTTGCTTTCATTAGTGAT	+
Preference number: 6 (lower is better) Translates to: GSHFLICWPCHT*GAGGQVAFISD Trigger: ATCACTAATGAAAGCAACCTGTCCTCCTGCCCCTCAGGTGTGGCAAGGCCAACAGATCAGGAAATGACTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS CAA 72 bp	GAGGGGCAGGAGGACAGGTTGCTTTCATTAGTGATGTaGGTTCAGGAGAGATGTTTTGGGCAGCCTGAGGGA	+
Preference number: 6 (lower is better) Translates to: EGQEDRLLSLVM*VQERCFGQPEG Trigger: TCCCTCAGGCTGCCCAAAACATCTCTCCTGAACCAACATCACTAATGAAAGCAACCTGTCCTCCTGCCCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS CAA 90 bp	GCCACACCTGAGGGGCAGGAGGACAGGTTGCTTTCATTAGTGATGTaGGTTCAGGAGAGATGTTTTGGGCAGCCTGAGGGATTGCATTCA	+
Preference number: 6 (lower is better) Translates to: ATPEGQEDRLLSLVM*VQERCFGQPEGLHS Trigger: TGAATGCAATCCCTCAGGCTGCCCAAAACATCTCTCCTGAACCAACATCACTAATGAAAGCAACCTGTCCTCCTGCCCCTCAGGTGTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000482939.1
CDS CAA 90 bp	GAGGACGGTCTGCCTTGGCTTTTGACACTAGCACACGAGAGCTTCTaGCTTATAGGAGAGGGACTGTACTCTAGACTGTTGAGAACATCC	+
Preference number: 6 (lower is better) Translates to: EDGLPWLLTLAHESF*LIGEGLYSRLLRTS Trigger: GGATGTTCTCAACAGTCTAGAGTACAGTCCCTCTCCTATAAGCAAGAAGCTCTCGTGTGCTAGTGTCAAAAGCCAAGGCAGACCGTCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000295755.7
CDS TCA 72 bp	TTGATCTTCTTATCCATAACGGAGTCTAAGGAACACTaGGTACTCCCCGGGTTGATCAGCTGGAGAAGGGGG	+
Preference number: 6 (lower is better) Translates to: LIFLSITESKEH*VLPGLISWRRG Trigger: CCCCCTTCTCCAGCTGATCAACCCGGGGAGTACTCAGTGTTCCTTAGACTCCGTTATGGATAAGAAGATCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000295755.7
CDS CAA 72 bp	CTGCCTTGGCTTTTGACACTAGCACACGAGAGCTTCTaGCTTATAGGAGAGGGACTGTACTCTAGACTGTTG	+
Preference number: 6 (lower is better) Translates to: LPWLLTLAHESF*LIGEGLYSRLL Trigger: CAACAGTCTAGAGTACAGTCCCTCTCCTATAAGCAAGAAGCTCTCGTGTGCTAGTGTCAAAAGCCAAGGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000295755.7
CDS CAA 72 bp	GAACAGCGTCATCAGTACTGGATCTCTTTAGGCAGTTaGGAGAAGCAGGTAGGGTTGCTGAAGAACAGATTT	+
Preference number: 6 (lower is better) Translates to: EQRHQYWISLGS*EKQVGLLKNRF Trigger: AAATCTGTTCTTCAGCAACCCTACCTGCTTCTCCAAACTGCCTAAAGAGATCCAGTACTGATGACGCTGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295755.7
CDS CAA 90 bp	AAGATGGAAGAACAGCGTCATCAGTACTGGATCTCTTTAGGCAGTTaGGAGAAGCAGGTAGGGTTGCTGAAGAACAGATTTATTCACCAA	+
Preference number: 6 (lower is better) Translates to: KMEEQRHQYWISLGS*EKQVGLLKNRFIHQ Trigger: TTGGTGAATAAATCTGTTCTTCAGCAACCCTACCTGCTTCTCCAAACTGCCTAAAGAGATCCAGTACTGATGACGCTGTTCTTCCATCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295755.7
CDS CCA 72 bp	CGAGAGCTTCTTGCTTATAGGAGAGGGACTGTACTCTaGTTCATAATGAGTGTTCATAAATTACAGCTACCA	+
Preference number: 6 (lower is better) Translates to: RELLAYRRGTVL*FIMSVHKLQLP Trigger: TGGTAGCTGTAATTTATGAACACTCATTATGAACCAGAGTACAGTCCCTCTCCTATAAGCAAGAAGCTCTCG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000482939.1