Pregenerated sensors for RERG-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000256650

Ensembl transcript IDs: ENST00000539734.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGTCCTCTTGCTTATGCTGCCTCTTCAAAGCAGAAAAATGGCAGATaGTCAGTACCAGCTGGAGGTTGGTGGATCAACAGCAGAGTGGTC	+
Preference number: 5 (lower is better) Translates to: SPLAYAASSKQKNGR*SVPAGGWWINSRVV Trigger: GACCACTCTGCTGTTGATCCACCAACCTCCAGCTGGTACTGAGCATCTGCCATTTTTCTGCTTTGAAGAGGCAGCATAAGCAAGAGGACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539734.1
CDS CCA 90 bp	TCAAAGCAGAAAAATGGCAGATGCTCAGTACCAGCTGGAGGTTGGTaGATCAACAGCAGAGTGGTCACCAAGCAGAGAGAAGCTTATAAG	+
Preference number: 5 (lower is better) Translates to: SKQKNGRCSVPAGGW*INSRVVTKQREAYK Trigger: CTTATAAGCTTCTCTCTGCTTGGTGACCACTCTGCTGTTGATCCACCAACCTCCAGCTGGTACTGAGCATCTGCCATTTTTCTGCTTTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539734.1
CDS CCA 90 bp	TCTTCAAAGCAGAAAAATGGCAGATGCTCAGTACCAGCTGGAGGTTaGTGGATCAACAGCAGAGTGGTCACCAAGCAGAGAGAAGCTTAT	+
Preference number: 5 (lower is better) Translates to: SSKQKNGRCSVPAGG*WINSRVVTKQREAY Trigger: ATAAGCTTCTCTCTGCTTGGTGACCACTCTGCTGTTGATCCACCAACCTCCAGCTGGTACTGAGCATCTGCCATTTTTCTGCTTTGAAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539734.1
CDS CCA 90 bp	TATATGGAGTCCTCTTGCTTATGCTGCCTCTTCAAAGCAGAAAAATaGCAGATGCTCAGTACCAGCTGGAGGTTGGTGGATCAACAGCAG	+
Preference number: 5 (lower is better) Translates to: YMESSCLCCLFKAEK*QMLSTSWRLVDQQQ Trigger: CTGCTGTTGATCCACCAACCTCCAGCTGGTACTGAGCATCTGCCATTTTTCTGCTTTGAAGAGGCAGCATAAGCAAGAGGACTCCATATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539734.1
CDS CAA 72 bp	GCAGAAAAATGGCAGATGCTCAGTACCAGCTGGAGGTaGGTGGATCAACAGCAGAGTGGTCACCAAGCAGAG	+
Preference number: 6 (lower is better) Translates to: AEKWQMLSTSWR*VDQQQSGHQAE Trigger: CTCTGCTTGGTGACCACTCTGCTGTTGATCCACCAACCTCCAGCTGGTACTGAGCATCTGCCATTTTTCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539734.1
CDS CCA 72 bp	AAAAATGGCAGATGCTCAGTACCAGCTGGAGGTTGGTaGATCAACAGCAGAGTGGTCACCAAGCAGAGAGAA	+
Preference number: 6 (lower is better) Translates to: KNGRCSVPAGGW*INSRVVTKQRE Trigger: TTCTCTCTGCTTGGTGACCACTCTGCTGTTGATCCACCAACCTCCAGCTGGTACTGAGCATCTGCCATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539734.1
CDS CAA 90 bp	CTCTTCAAAGCAGAAAAATGGCAGATGCTCAGTACCAGCTGGAGGTaGGTGGATCAACAGCAGAGTGGTCACCAAGCAGAGAGAAGCTTA	+
Preference number: 6 (lower is better) Translates to: LFKAEKWQMLSTSWR*VDQQQSGHQAERSL Trigger: TAAGCTTCTCTCTGCTTGGTGACCACTCTGCTGTTGATCCACCAACCTCCAGCTGGTACTGAGCATCTGCCATTTTTCTGCTTTGAAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539734.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu