Pregenerated sensors for REG3A (Homo sapiens)
Ensembl gene IDs: ENSG00000172016Ensembl transcript IDs: ENST00000305165.3, ENST00000393878.5, ENST00000409839.7
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGCATGCCCATGATGAGTaGCACACCAAACACAGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: DKNEVVRLGELSEYSLPGHAHDE*HTKHRL Trigger: CAGCCTGTGTTTGGTGTGCAACTCATCATGGGCATG...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000305165.3 ENST00000393878.5 ENST00000409839.7 |
||
| 3UTR TCA 72 bp | AGCCTTAGGCCGTATGACAAAATGAAGAGACTGAAATaGCAGCGGGGAGGAAGAAACAGAAGAAAGATAAGA | + |
|
Preference number: 3 (lower is better) Translates to: SLRPYDKMKRLK*QRGGRNRRKIR Trigger: TCTTATCTTTCTTCTGTTTCTTCCTCCCCGCTGTCATTTCAGTCTCTTCATTTTGTCATACGGCCTAAGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000305165.3 ENST00000393878.5 ENST00000409839.7 |
||
| CDS-3UTR CCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGGACAGGCTCGCACAGTaGCCGGGGCTTGAGATGGTG | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGDRLAQ*PGLEMV Trigger: CACCATCTCAAGCCCCGGCCACTGTGCGAGCCTGTC...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENST00000305165.3 ENST00000393878.5 ENST00000409839.7 |
||
| CDS-3UTR CCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGCCAGAGGGCCGCTTCTaGCAGGCCAGATCTGCATCT | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGPEGRF*QARSAS Trigger: AGATGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGG...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000305165.3 ENST00000393878.5 ENST00000409839.7 |
||
| CDS-3UTR TCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGCCAGGACACCCTTGCTaGGTCTCAGAGTTCCTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGPGHPC*VSEFLC Trigger: GCACAGGAACTCTGAGACTCAGCAAGGGTGTCCTGG...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000393878.5 |
||
| CDS-3UTR TCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGCCAAACACAGGCTGCTaGCTTCCCTCCTGCACTAGT | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGPNTGC*LPSCTS Trigger: ACTAGTGCAGGAGGGAAGTCAGCAGCCTGTGTTTGG...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000305165.3 ENST00000393878.5 ENST00000409839.7 |
||
| CDS-3UTR CCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGCGGGGCTTGAGATGGTaGAGGGATTTCTCTCCCATG | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGRGLRW*RDFSPM Trigger: CATGGGAGAGAAATCCCTCCACCATCTCAAGCCCCG...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000305165.3 ENST00000393878.5 ENST00000409839.7 |
||
| CDS-3UTR GCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGCTGGCAGGCCAGATCTaGATCTGTCCAGGATTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGLAGQI*ICPGFW Trigger: CCAAAATCCTGGACAGATGCAGATCTGGCCTGCCAG...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000305165.3 ENST00000393878.5 ENST00000409839.7 |
||
| CDS-3UTR GCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGACCTCAGAAATGCTGTaGTTCTCGACAGGCTCGCAC | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGTSEML*FSTGSH Trigger: GTGCGAGCCTGTCGAGAAGCACAGCATTTCTGAGGT...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000305165.3 ENST00000393878.5 ENST00000409839.7 |
||
| CDS-3UTR GCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGTTCTCCTGTGTCATGTaGAGTAGCTCCTCCCTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGFSCVM*SSSSLG Trigger: ACCCAGGGAGGAGCTACTGCACATGACACAGGAGAA...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000393878.5 |
||
| CDS-3UTR CCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGGTGTCTGCGACTCTCTaGTGGGATATGGTATGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGVSATL*WDMVWF Trigger: AAACCATACCATATCCCACCAGAGAGTCGCAGACAC...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000409839.7 |
||
| CDS-3UTR GCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGACACAGATACCCCACTaGCTCATGTCATTTTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGTQIPH*LMSFSF Trigger: GAAGGAAAATGACATGAGGCAGTGGGGTATCTGTGT...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000393878.5 |
||
| CDS-3UTR CCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGTCAGGAGTCACTCTCTaGTGGGATATGGTATGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGSGVTL*WDMVWF Trigger: AAACCATACCATATCCCACCAGAGAGTGACTCCTGA...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000305165.3 |
||
| CDS-3UTR CCA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGTCACTAAAGAAAGCGTaGTCAGTGGGAGAACACACA | + |
|
Preference number: 4 (lower is better) Translates to: DKNEVVRLGELSEYSLPGSLKKA*SVGEHT Trigger: TGTGTGTTCTCCCACTGACCACGCTTTCTTTAGTGA...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000393878.5 |
||
| CDS-3UTR CAA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGTCCCAACCTTCTCCATaGGGCTCGGTGCCCTGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: DKNEVVRLGELSEYSLPGSQPSP*GSVPCV Trigger: CACACAGGGCACCGAGCCCAATGGAGAAGGTTGGGA...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000305165.3 ENST00000393878.5 ENST00000409839.7 |
||
| CDS-3UTR CAA 90 bp | GATAAGAATGAGGTGGTCAGGTTGGGGGAATTAAGCGAATATTCTCTTCCAGGGAGGACTAAAGTGATCTaGGTCACATCCATCATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: DKNEVVRLGELSEYSLPGRTKVI*VTSIIF Trigger: GAAGATGATGGATGTGACCAAGATCACTTTAGTCCT...CCCTGGAAGAGAATATTCGCTTAATTCCCCCAACCTGACCACCTCATTCTTATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000393878.5 |
||