RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for REEP5 (Homo sapiens)

Ensembl gene IDs: ENSG00000129625

Ensembl transcript IDs: ENST00000261482.8, ENST00000379638.9, ENST00000474542.2, ENST00000497856.6, ENST00000504247.1, ENST00000511865.6, ENST00000513339.5

Found 137 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTAGTAGACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTaGTCTTACTGTACAGAAGTTATAAATGACACATACAACCTTCCC +
Preference number: 1 (lower is better)
Translates to: LVDHTSTMVPPAFGR*SYCTEVINDTYNLP
Trigger: GGGAAGGTTGTATGTGTCATTTATAACTTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGTCTACTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR CCA 90 bp AAACTCAGATTTTCTAGTCCAGACAAATTGCTCTCTATAACGATTTaGCAGATCAATGGAGACATCCGTTTTAACTTTACTGTTCTGTAC +
Preference number: 1 (lower is better)
Translates to: KLRFSSPDKLLSITI*QINGDIRFNFTVLY
Trigger: GTACAGAACAGTAAAGTTAAAACGGATGTCTCCATTGATCTGCCAAATCGTTATAGAGAGCAATTTGTCTGGACTAGAAAATCTGAGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379638.9
3UTR-3UTR GCA 90 bp CTTGACCACACTGTCCATCTGGGACTCGTGCTTCAGGAAGAAAGGACGGATGATAAGGGCTCGGGGCCATaGACCACAACAGGAAGCCAC +
Preference number: 2 (lower is better)
Translates to: LDHTVHLGLVLQEERTDDKGSGP*TTTGSH
Trigger: GTGGCTTCCTGTTGTGGTGCATGGCCCCGAGCCCTT...ATCATCCGTCCTTTCTTCCTGAAGCACGAGTCCCAGATGGACAGTGTGGTCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000511865.6
3UTR-3UTR GCA 90 bp ACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGCATACAACCTTCCCCTaGTCCCTCCCCATGAGCATG +
Preference number: 2 (lower is better)
Translates to: TTPAQWFLQLLAGGLTVQHTTFP*SLPMSM
Trigger: CATGCTCATGGGGAGGGAGCAGGGGAAGGTTGTATG...CTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR-3UTR GCA 90 bp CACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAACATACAACCTTCCCCTaGTCCCTCCCCATGAGCATG +
Preference number: 2 (lower is better)
Translates to: HTSTMVPPAFGRWSYCTEHTTFP*SLPMSM
Trigger: CATGCTCATGGGGAGGGAGCAGGGGAAGGTTGTATG...TTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR CAA 90 bp ACGGTAGCTTTCTTCGCTTCTTTAGTGATGGCATCTGCAGTCTCTTaGGCCTTGTCTTTAAGGTCCTTGACCACACTGTCCATCTGGGAC +
Preference number: 2 (lower is better)
Translates to: TVAFFASLVMASAVS*ALSLRSLTTLSIWD
Trigger: GTCCCAGATGGACAGTGTGGTCAAGGACCTTAAAGACAAGGCCAAAGAGACTGCAGATGCCATCACTAAAGAAGCGAAGAAAGCTACCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000511865.6
3UTR-3UTR GCA 90 bp ACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGTACAGAGAAAATGCGTaGAGGGAGAGCCCAGTAAAG +
Preference number: 2 (lower is better)
Translates to: TPAQWFLQLLAGGLTVQKYRENA*RESPVK
Trigger: CTTTACTGGGCTCTCCCTGCACGCATTTTCTCTGTA...CTTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR-3UTR CCA 90 bp CACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGTCATTTTCCAAAAACGTaGACACTGCCCACTGCATTA +
Preference number: 2 (lower is better)
Translates to: HQHNGSSSFWQVVLLYRSHFPKT*TLPTAL
Trigger: TAATGCAGTGGGCAGTGTCCACGTTTTTGGAAAATG...ACTTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR-3UTR CCA 90 bp CTTGACCACACTGTCCATCTGGGACTCGTGCTTCAGGAAGAAAGGACGGATGATAGTTTCCATCCAGTCTaGTTTAGGTGCTCTTCTTTT +
Preference number: 2 (lower is better)
Translates to: LDHTVHLGLVLQEERTDDSFHPV*FRCSSF
Trigger: AAAAGAAGAGCACCTAAACCAGACTGGATGGAAACT...ATCATCCGTCCTTTCTTCCTGAAGCACGAGTCCCAGATGGACAGTGTGGTCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000511865.6
3UTR-3UTR TCA 90 bp GTGCTCTTCTTTTCTTCACCCAGTAAATTCACGGTAGCTTTCTTCGCTTCTTTAGGAAGAAAGGACGGATaGTGCGCTTGTAGAGCAGTT +
Preference number: 2 (lower is better)
Translates to: VLFFSSPSKFTVAFFASLGRKDG*CACRAV
Trigger: AACTGCTCTACAAGCGCATCATCCGTCCTTTCTTCC...TAAAGAAGCGAAGAAAGCTACCGTGAATTTACTGGGTGAAGAAAAGAAGAGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000511865.6
3UTR-3UTR GCA 90 bp TATACCACAGTCCCTAATATAACATCAAGCTCCAGTAGGAAGGTACAGAGAGGGTTTAGTGATGGCATCTaGAGTCTCTTTGGCCTTGTC +
Preference number: 2 (lower is better)
Translates to: YTTVPNITSSSSRKVQRGFSDGI*SLFGLV
Trigger: GACAAGGCCAAAGAGACTGCAGATGCCATCACTAAA...CCCTCTCTGTACCTTCCTACTGGAGCTTGATGTTATATTAGGGACTGTGGTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000511865.6
3UTR-3UTR CCA 90 bp TACTACGGAAACAACCAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTCGGTTCCTCCAGCTTTTaGCAGGTGGTCTTACTGTAC +
Preference number: 2 (lower is better)
Translates to: YYGNNQANLHSISFLTLFGSSSF*QVVLLY
Trigger: GTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACC...GAACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR-3UTR CCA 90 bp TTTTCTTCAGCTGTGAGTAGAGGAGTCTTCCCGAGAGTAGCAGTTGTTGATCCAATGAGGGCATTTAAATaGACTACAAGTGACTCTGAC +
Preference number: 2 (lower is better)
Translates to: FSSAVSRGVFPRVAVVDPMRAFK*TTSDSD
Trigger: GTCAGAGTCACTTGTAGTCCATTTAAATGCCCTCAT...TGGATCAACAACTGCTACTCTCGGGAAGACTCCTCTACTCACAGCTGAAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
3UTR-3UTR GCA 90 bp GGTATTCATATGCCATATACTACGGAAACAACCAGGCCAATCTCCATTCGATTTGTGGACACTGCCCACTaGATTAAGTTTAAAGTGCTC +
Preference number: 2 (lower is better)
Translates to: GIHMPYTTETTRPISIRFVDTAH*IKFKVL
Trigger: GAGCACTTTAAACTTAATGCAGTGGGCAGTGTCCAC...AAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTATATGGCATATGAATACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR-3UTR CCA 90 bp TATACCACAGTCCCTAATATAACATCAAGCTCCAGTAGGAAGGTACAGAGAGGGAGTTTCCATCCAGTCTaGTTTAGGTGCTCTTCTTTT +
Preference number: 2 (lower is better)
Translates to: YTTVPNITSSSSRKVQRGSFHPV*FRCSSF
Trigger: AAAAGAAGAGCACCTAAACCAGACTGGATGGAAACT...CCCTCTCTGTACCTTCCTACTGGAGCTTGATGTTATATTAGGGACTGTGGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000511865.6
ENST00000513339.5
3UTR-3UTR CCA 90 bp AATGGAGACATCCGTTTTAACTTTACTGTTCTGTACTTACTATGTAGTCATGTGACCACACCAGCACAATaGTTCCTCCAGCTTTTGGCA +
Preference number: 2 (lower is better)
Translates to: NGDIRFNFTVLYLLCSHVTTPAQ*FLQLLA
Trigger: TGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGT...CACATGACTACATAGTAAGTACAGAACAGTAAAGTTAAAACGGATGTCTCCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379638.9
3UTR-3UTR GCA 90 bp TTGCTCTCTATAACGATTTGGCAGATCAATGGAGACATCCGTTTTAACTTTACTGTGGACACTGCCCACTaGATTAAGTTTAAAGTGCTC +
Preference number: 2 (lower is better)
Translates to: LLSITIWQINGDIRFNFTVDTAH*IKFKVL
Trigger: GAGCACTTTAAACTTAATGCAGTGGGCAGTGTCCAC...AGTAAAGTTAAAACGGATGTCTCCATTGATCTGCCAAATCGTTATAGAGAGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
3UTR CAA 90 bp AAGCAGATTATGGGTTACTTTATACTTCCTTTCATTCTCCCAGAATaGCTCTTAGAGCTAGGTGTCGTCATTAGCATGTTGTTGCTAATG +
Preference number: 2 (lower is better)
Translates to: KQIMGYFILPFILPE*LLELGVVISMLLLM
Trigger: CATTAGCAACAACATGCTAATGACGACACCTAGCTCTAAGAGCAATTCTGGGAGAATGAAAGGAAGTATAAAGTAACCCATAATCTGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379638.9
3UTR-3UTR CCA 90 bp ATTTATTTCCATTCAGTGTATCACATCTTCAGGATAGGTGATAACAGTGTGAAGCCAGCTTTTGGCAGGTaGTCTTACTGTACAGAAGTT +
Preference number: 2 (lower is better)
Translates to: IYFHSVYHIFRIGDNSVKPAFGR*SYCTEV
Trigger: AACTTCTGTACAGTAAGACCACCTGCCAAAAGCTGG...CTTCACACTGTTATCACCTATCCTGAAGATGTGATACACTGAATGGAAATAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
3UTR-3UTR TCA 90 bp CAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTCACTTGCATATTAATCTACAGAAGTTATAAATaGCACATACAACCTTCCCCT +
Preference number: 2 (lower is better)
Translates to: QANLHSISFLTLFTCILIYRSYK*HIQPSP
Trigger: AGGGGAAGGTTGTATGTGTCATTTATAACTTCTGTA...GATTAATATGCAAGTGAACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR-3UTR CAA 90 bp TATACCACAGTCCCTAATATAACATCAAGCTCCAGTAGGAAGGTACAGAGAGGGTTGTCTTTAAGGTCCTaGACCACACTGTCCATCTGG +
Preference number: 3 (lower is better)
Translates to: YTTVPNITSSSSRKVQRGLSLRS*TTLSIW
Trigger: CCAGATGGACAGTGTGGTCAAGGACCTTAAAGACAA...CCCTCTCTGTACCTTCCTACTGGAGCTTGATGTTATATTAGGGACTGTGGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000511865.6
3UTR CCA 72 bp GAAGGTACAGAGAGGGCAGGAAGTTTCCATCCAGTCTaGTTTAGGTGCTCTTCTTTTCTTCACCCAGTAAAT +
Preference number: 3 (lower is better)
Translates to: EGTERAGSFHPV*FRCSSFLHPVN
Trigger: ATTTACTGGGTGAAGAAAAGAAGAGCACCTAAACCAGACTGGATGGAAACTTCCTGCCCTCTCTGTACCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000511865.6
ENST00000513339.5
3UTR-3UTR CAA 90 bp TTTTCTTCACCCAGTAAATTCACGGTAGCTTTCTTCGCTTCTTTAGTGATGGCAGCATCTGCAGTCTCTTaGGCCTTGTCTTTAAGGTCC +
Preference number: 3 (lower is better)
Translates to: FSSPSKFTVAFFASLVMAASAVS*ALSLRS
Trigger: GGACCTTAAAGACAAGGCCAAAGAGACTGCAGATGC...TGCCATCACTAAAGAAGCGAAGAAAGCTACCGTGAATTTACTGGGTGAAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000511865.6
3UTR GCA 72 bp AAAGATTATCCTAAATGTAACTACAGAGAAAATGCGTaGAGGGAGAGCCCAGTAAAGTACACAGCCTGTGGG +
Preference number: 3 (lower is better)
Translates to: KDYPKCNYRENA*RESPVKYTACG
Trigger: CCCACAGGCTGTGTACTTTACTGGGCTCTCCCTGCACGCATTTTCTCTGTAGTTACATTTAGGATAATCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR-3UTR CAA 90 bp TATACTACGGAAACAACCAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTGGTTCCTCCAGCTTTaGGCAGGTGGTCTTACTGTA +
Preference number: 3 (lower is better)
Translates to: YTTETTRPISIRFHFSLCWFLQL*AGGLTV
Trigger: TACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCA...ACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR-3UTR CAA 90 bp CAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTCACTTGCATATTAATCTGGTTCCTCCAGCTTTaGGCAGGTGGTCTTACTGTA +
Preference number: 3 (lower is better)
Translates to: QANLHSISFLTLFTCILIWFLQL*AGGLTV
Trigger: TACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCA...GATTAATATGCAAGTGAACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR-3UTR CAA 90 bp TTTTCTTCAGCTGTGAGTAGAGGAGTCTTCCCGAGAGTAGCAGTTGTTGATCCAACATGTTTCTCCGCTTaGAAGATAAAACCAGAAATG +
Preference number: 3 (lower is better)
Translates to: FSSAVSRGVFPRVAVVDPTCFSA*KIKPEM
Trigger: CATTTCTGGTTTTATCTTCAAAGCGGAGAAACATGT...TGGATCAACAACTGCTACTCTCGGGAAGACTCCTCTACTCACAGCTGAAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379638.9
3UTR GCA 72 bp TTAACTTTACTGTTCTGTACTTACTATGTAGTCATGTaGAGCTTATCAACACAAAGAATACGGATGAGGGCA +
Preference number: 3 (lower is better)
Translates to: LTLLFCTYYVVM*SLSTQRIRMRA
Trigger: TGCCCTCATCCGTATTCTTTGTGTTGATAAGCTGCACATGACTACATAGTAAGTACAGAACAGTAAAGTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379638.9
3UTR CCA 72 bp TTTTCTAGTCCAGACAAATTGCTCTCTATAACGATTTaGCAGATCAATGGAGACATCCGTTTTAACTTTACT +
Preference number: 3 (lower is better)
Translates to: FSSPDKLLSITI*QINGDIRFNFT
Trigger: AGTAAAGTTAAAACGGATGTCTCCATTGATCTGCCAAATCGTTATAGAGAGCAATTTGTCTGGACTAGAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CCA 90 bp ACCACACTGTCCATCTGGGACTCGTGCTTCAGGAAGAAAGGACGGATGATGCGCTCATGGCCGCAGACATaGCGGGGACCGTCTCGCCGC +
Preference number: 4 (lower is better)
Translates to: TTLSIWDSCFRKKGRMMRSWPQT*RGPSRR
Trigger: GCGGCGAGACGGTCCCCGCCATGTCTGCGGCCATGA...GCGCATCATCCGTCCTTTCTTCCTGAAGCACGAGTCCCAGATGGACAGTGTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR GCA 90 bp ACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGGGCTCGGGGCCATaGACCACAACAGGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: TTPAQWFLQLLAGGLTVQKGSGP*TTTGSH
Trigger: GTGGCTTCCTGTTGTGGTGCATGGCCCCGAGCCCTT...CTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CCA 90 bp TTCAGGGAATTGAGAGTTACAGGTTACTCTGTGTGTGTGTGTGTGTGTGTGTGTTCATGGCCGCAGACATaGCGGGGACCGTCTCGCCGC +
Preference number: 4 (lower is better)
Translates to: FRELRVTGYSVCVCVCVCSWPQT*RGPSRR
Trigger: GCGGCGAGACGGTCCCCGCCATGTCTGCGGCCATGA...ACACACACACACACACACACACACAGAGTAACCTGTAACTCTCAATTCCCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CCA 90 bp CCTAAATGTAACTACAGAGAAAATGCGTGCAGGGAGAGCCCAGTAAAGTACACATCATGGCCGCAGACATaGCGGGGACCGTCTCGCCGC +
Preference number: 4 (lower is better)
Translates to: PKCNYRENACRESPVKYTSWPQT*RGPSRR
Trigger: GCGGCGAGACGGTCCCCGCCATGTCTGCGGCCATGA...TGTGTACTTTACTGGGCTCTCCCTGCACGCATTTTCTCTGTAGTTACATTTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp TTCCATCCAGTCTGGTTTAGGTGCTCTTCTTTTCTTCACCCAGTAAATTCACGGCGAACCTCTCCCTCATaGCCGCAGACATGGCGGGGA +
Preference number: 4 (lower is better)
Translates to: FHPVWFRCSSFLHPVNSRRTSPS*PQTWRG
Trigger: TCCCCGCCATGTCTGCGGCCATGAGGGAGAGGTTCG...CCGTGAATTTACTGGGTGAAGAAAAGAAGAGCACCTAAACCAGACTGGATGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR GCA 90 bp TTCCATCCAGTCTGGTTTAGGTGCTCTTCTTTTCTTCACCCAGTAAATTCACGGAAGGGCTCGGGGCCATaGACCACAACAGGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: FHPVWFRCSSFLHPVNSRKGSGP*TTTGSH
Trigger: GTGGCTTCCTGTTGTGGTGCATGGCCCCGAGCCCTT...CCGTGAATTTACTGGGTGAAGAAAAGAAGAGCACCTAAACCAGACTGGATGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR GCA 90 bp ACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGCCAGAAGGTCAGTCATaGAGTTCTTCTCGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: TTPAQWFLQLLAGGLTVQPEGQS*SSSRAG
Trigger: TCCTGCACGAGAAGAACTGCATGACTGACCTTCTGG...CTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp CATTTTCCAAAAACGTGGACACTGCCCACTGCATTAAGTTTAAAGTGCTCCCTACGAACCTCTCCCTCATaGCCGCAGACATGGCGGGGA +
Preference number: 4 (lower is better)
Translates to: HFPKTWTLPTALSLKCSLRTSPS*PQTWRG
Trigger: TCCCCGCCATGTCTGCGGCCATGAGGGAGAGGTTCG...TAGGGAGCACTTTAAACTTAATGCAGTGGGCAGTGTCCACGTTTTTGGAAAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp AGGAAGGTACAGAGAGGGCAGGAAGTTTCCATCCAGTCTGGTTTAGGTGCTCTTTTTTGGCCTCGAGCTTaGCCAGAAGGTCAGTCATGC +
Preference number: 4 (lower is better)
Translates to: RKVQRGQEVSIQSGLGALFWPRA*PEGQSC
Trigger: GCATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAA...AAGAGCACCTAAACCAGACTGGATGGAAACTTCCTGCCCTCTCTGTACCTTCCT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000511865.6
ENST00000513339.5
CDS-3UTR GCA 90 bp CTTGACCACACTGTCCATCTGGGACTCGTGCTTCAGGAAGAAAGGACGGATGATCAAATCCTATCAGGTTaGAGAGGAGAGAGGCTCCAT +
Preference number: 4 (lower is better)
Translates to: LDHTVHLGLVLQEERTDDQILSG*RGERLH
Trigger: ATGGAGCCTCTCTCCTCTGCAACCTGATAGGATTTG...ATCATCCGTCCTTTCTTCCTGAAGCACGAGTCCCAGATGGACAGTGTGGTCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR GCA 90 bp TGTAACTACAGAGAAAATGCGTGCAGGGAGAGCCCAGTAAAGTACACAGCCTGTATGCAGTTCTTCTCGTaGAGGAACCGGTCGAACCTC +
Preference number: 4 (lower is better)
Translates to: CNYRENACRESPVKYTACMQFFS*RNRSNL
Trigger: GAGGTTCGACCGGTTCCTGCACGAGAAGAACTGCAT...ACAGGCTGTGTACTTTACTGGGCTCTCCCTGCACGCATTTTCTCTGTAGTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR GCA 90 bp GACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACATACAGAGAAAATGCGTaGAGGGAGAGCCCAGTAAAG +
Preference number: 4 (lower is better)
Translates to: DHTSTMVPPAFGRWSYCTYRENA*RESPVK
Trigger: CTTTACTGGGCTCTCCCTGCACGCATTTTCTCTGTA...TGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp CACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGGTTCCTCCAGCTTTTaGCAGGTGGTCTTACTGTAC +
Preference number: 4 (lower is better)
Translates to: HTSTMVPPAFGRWSYCTEGSSSF*QVVLLY
Trigger: GTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACC...TTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR TCA 90 bp CTTGACCACACTGTCCATCTGGGACTCGTGCTTCAGGAAGAAAGGACGGATGATAGAATTCAGCAATGCTaGACACACCATACACTACCC +
Preference number: 4 (lower is better)
Translates to: LDHTVHLGLVLQEERTDDRIQQC*THHTLP
Trigger: GGGTAGTGTATGGTGTGTTCAGCATTGCTGAATTCT...ATCATCCGTCCTTTCTTCCTGAAGCACGAGTCCCAGATGGACAGTGTGGTCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR TCA 90 bp CTTGACCACACTGTCCATCTGGGACTCGTGCTTCAGGAAGAAAGGACGGATGATGTAGAAGGGGAACCATaGCAGGAAGATATCAGAGAA +
Preference number: 4 (lower is better)
Translates to: LDHTVHLGLVLQEERTDDVEGEP*QEDIRE
Trigger: TTCTCTGATATCTTCCTGTCATGGTTCCCCTTCTAC...ATCATCCGTCCTTTCTTCCTGAAGCACGAGTCCCAGATGGACAGTGTGGTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR GCA 90 bp CACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAACAAATCCTATCAGGTTaGAGAGGAGAGAGGCTCCAT +
Preference number: 4 (lower is better)
Translates to: HTSTMVPPAFGRWSYCTEQILSG*RGERLH
Trigger: ATGGAGCCTCTCTCCTCTGCAACCTGATAGGATTTG...TTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR GCA 90 bp CTTGACCACACTGTCCATCTGGGACTCGTGCTTCAGGAAGAAAGGACGGATGATTTTAGTGATGGCATCTaGAGTCTCTTTGGCCTTGTC +
Preference number: 4 (lower is better)
Translates to: LDHTVHLGLVLQEERTDDFSDGI*SLFGLV
Trigger: GACAAGGCCAAAGAGACTGCAGATGCCATCACTAAA...ATCATCCGTCCTTTCTTCCTGAAGCACGAGTCCCAGATGGACAGTGTGGTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR CCA 90 bp TTCCATCCAGTCTGGTTTAGGTGCTCTTCTTTTCTTCACCCAGTAAATTCACGGTGTTCACGCCGGTTTTaGCCTCGAGCTTGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: FHPVWFRCSSFLHPVNSRCSRRF*PRAWPE
Trigger: TTCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACA...CCGTGAATTTACTGGGTGAAGAAAAGAAGAGCACCTAAACCAGACTGGATGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR CCA 90 bp TATACCACAGTCCCTAATATAACATCAAGCTCCAGTAGGAAGGTACAGAGAGGGTGTTCACGCCGGTTTTaGCCTCGAGCTTGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: YTTVPNITSSSSRKVQRGCSRRF*PRAWPE
Trigger: TTCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACA...CCCTCTCTGTACCTTCCTACTGGAGCTTGATGTTATATTAGGGACTGTGGTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000379638.9
ENST00000511865.6
ENST00000513339.5
CDS-3UTR CCA 90 bp ACCACACTGTCCATCTGGGACTCGTGCTTCAGGAAGAAAGGACGGATGATGCGCAGTTTCCATCCAGTCTaGTTTAGGTGCTCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: TTLSIWDSCFRKKGRMMRSFHPV*FRCSSF
Trigger: AAAAGAAGAGCACCTAAACCAGACTGGATGGAAACT...GCGCATCATCCGTCCTTTCTTCCTGAAGCACGAGTCCCAGATGGACAGTGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR CCA 90 bp CACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGTCCAGCTTTTGGCAGGTaGTCTTACTGTACAGAAGTT +
Preference number: 4 (lower is better)
Translates to: HQHNGSSSFWQVVLLYRSPAFGR*SYCTEV
Trigger: AACTTCTGTACAGTAAGACCACCTGCCAAAAGCTGG...ACTTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR TCA 90 bp TTCCATCCAGTCTGGTTTAGGTGCTCTTCTTTTCTTCACCCAGTAAATTCACGGGGAAGAAAGGACGGATaGTGCGCTTGTAGAGCAGTT +
Preference number: 4 (lower is better)
Translates to: FHPVWFRCSSFLHPVNSRGRKDG*CACRAV
Trigger: AACTGCTCTACAAGCGCATCATCCGTCCTTTCTTCC...CCGTGAATTTACTGGGTGAAGAAAAGAAGAGCACCTAAACCAGACTGGATGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR TCA 90 bp ACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGGTTGATCCAAATGATTaGAGCCTTCAGGTAAGGGAA +
Preference number: 4 (lower is better)
Translates to: TPAQWFLQLLAGGLTVQKVDPND*SLQVRE
Trigger: TTCCCTTACCTGAAGGCTTCAATCATTTGGATCAAC...CTTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CCA 90 bp CATTTTCCAAAAACGTGGACACTGCCCACTGCATTAAGTTTAAAGTGCTCCCTATTTTGGCCTCGAGCTTaGCCAGAAGGTCAGTCATGC +
Preference number: 4 (lower is better)
Translates to: HFPKTWTLPTALSLKCSLFWPRA*PEGQSC
Trigger: GCATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAA...TAGGGAGCACTTTAAACTTAATGCAGTGGGCAGTGTCCACGTTTTTGGAAAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp AGACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGTTTCCATCCAGTCTaGTTTAGGTGCTCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: RPHQHNGSSSFWQVVLLYSFHPV*FRCSSF
Trigger: AAAAGAAGAGCACCTAAACCAGACTGGATGGAAACT...GTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp CCTAAATGTAACTACAGAGAAAATGCGTGCAGGGAGAGCCCAGTAAAGTACACAGGTTCCTCCAGCTTTTaGCAGGTGGTCTTACTGTAC +
Preference number: 4 (lower is better)
Translates to: PKCNYRENACRESPVKYTGSSSF*QVVLLY
Trigger: GTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACC...TGTGTACTTTACTGGGCTCTCCCTGCACGCATTTTCTCTGTAGTTACATTTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp GACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAATGAGGGCATTTAAATaGACTACAAGTGACTCTGAC +
Preference number: 4 (lower is better)
Translates to: DHTSTMVPPAFGRWSYCTMRAFK*TTSDSD
Trigger: GTCAGAGTCACTTGTAGTCCATTTAAATGCCCTCAT...TGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR TCA 90 bp CACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGTCACAAAGAATACGGATaGGGGCATTTAAATGGACTA +
Preference number: 4 (lower is better)
Translates to: HQHNGSSSFWQVVLLYRSHKEYG*GHLNGL
Trigger: TAGTCCATTTAAATGCCCTCATCCGTATTCTTTGTG...ACTTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR GCA 90 bp TATACCACAGTCCCTAATATAACATCAAGCTCCAGTAGGAAGGTACAGAGAGGGCAAATCCTATCAGGTTaGAGAGGAGAGAGGCTCCAT +
Preference number: 4 (lower is better)
Translates to: YTTVPNITSSSSRKVQRGQILSG*RGERLH
Trigger: ATGGAGCCTCTCTCCTCTGCAACCTGATAGGATTTG...CCCTCTCTGTACCTTCCTACTGGAGCTTGATGTTATATTAGGGACTGTGGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000379638.9
ENST00000511865.6
ENST00000513339.5
CDS-3UTR GCA 90 bp TACTACGGAAACAACCAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTCATGCAGTTCTTCTCGTaGAGGAACCGGTCGAACCTC +
Preference number: 4 (lower is better)
Translates to: YYGNNQANLHSISFLTLFMQFFS*RNRSNL
Trigger: GAGGTTCGACCGGTTCCTGCACGAGAAGAACTGCAT...GAACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR GCA 90 bp GTGCTCTTCTTTTCTTCACCCAGTAAATTCACGGTAGCTTTCTTCGCTTCTTTAATGCAGTTCTTCTCGTaGAGGAACCGGTCGAACCTC +
Preference number: 4 (lower is better)
Translates to: VLFFSSPSKFTVAFFASLMQFFS*RNRSNL
Trigger: GAGGTTCGACCGGTTCCTGCACGAGAAGAACTGCAT...TAAAGAAGCGAAGAAAGCTACCGTGAATTTACTGGGTGAAGAAAAGAAGAGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR GCA 90 bp CATTTTCCAAAAACGTGGACACTGCCCACTGCATTAAGTTTAAAGTGCTCCCTACCAGAAGGTCAGTCATaGAGTTCTTCTCGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: HFPKTWTLPTALSLKCSLPEGQS*SSSRAG
Trigger: TCCTGCACGAGAAGAACTGCATGACTGACCTTCTGG...TAGGGAGCACTTTAAACTTAATGCAGTGGGCAGTGTCCACGTTTTTGGAAAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp GGGCATTTAAATGGACTACAAGTGACTCTGACTTGTAAACTAGGGAAGCCTCTTACCACACCAGCACAATaGTTCCTCCAGCTTTTGGCA +
Preference number: 4 (lower is better)
Translates to: GHLNGLQVTLTCKLGKPLTTPAQ*FLQLLA
Trigger: TGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGT...AAGAGGCTTCCCTAGTTTACAAGTCAGAGTCACTTGTAGTCCATTTAAATGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CCA 90 bp ACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGCTCTCTATAACGATTTaGCAGATCAATGGAGACATC +
Preference number: 4 (lower is better)
Translates to: TPAQWFLQLLAGGLTVQKLSITI*QINGDI
Trigger: GATGTCTCCATTGATCTGCCAAATCGTTATAGAGAG...CTTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR GCA 90 bp TTTTCTTCACCCAGTAAATTCACGGTAGCTTTCTTCGCTTCTTTAGTGATGGCACCAGAAGGTCAGTCATaGAGTTCTTCTCGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: FSSPSKFTVAFFASLVMAPEGQS*SSSRAG
Trigger: TCCTGCACGAGAAGAACTGCATGACTGACCTTCTGG...TGCCATCACTAAAGAAGCGAAGAAAGCTACCGTGAATTTACTGGGTGAAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR GCA 90 bp CATTTTCCAAAAACGTGGACACTGCCCACTGCATTAAGTTTAAAGTGCTCCCTATACAGAGAAAATGCGTaGAGGGAGAGCCCAGTAAAG +
Preference number: 4 (lower is better)
Translates to: HFPKTWTLPTALSLKCSLYRENA*RESPVK
Trigger: CTTTACTGGGCTCTCCCTGCACGCATTTTCTCTGTA...TAGGGAGCACTTTAAACTTAATGCAGTGGGCAGTGTCCACGTTTTTGGAAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR GCA 90 bp GACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACATACTATGTAGTCATGTaGAGCTTATCAACACAAAGA +
Preference number: 4 (lower is better)
Translates to: DHTSTMVPPAFGRWSYCTYYVVM*SLSTQR
Trigger: TCTTTGTGTTGATAAGCTGCACATGACTACATAGTA...TGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CCA 90 bp TATACTACGGAAACAACCAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTTTTGGCCTCGAGCTTaGCCAGAAGGTCAGTCATGC +
Preference number: 4 (lower is better)
Translates to: YTTETTRPISIRFHFSLCFWPRA*PEGQSC
Trigger: GCATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAA...ACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp GGCAGATCAATGGAGACATCCGTTTTAACTTTACTGTTCTGTACTTACTATGTATGTTCACGCCGGTTTTaGCCTCGAGCTTGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: GRSMETSVLTLLFCTYYVCSRRF*PRAWPE
Trigger: TTCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACA...TACATAGTAAGTACAGAACAGTAAAGTTAAAACGGATGTCTCCATTGATCTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CCA 90 bp TTTTCTTCAGCTGTGAGTAGAGGAGTCTTCCCGAGAGTAGCAGTTGTTGATCCACATTTTCCAAAAACGTaGACACTGCCCACTGCATTA +
Preference number: 4 (lower is better)
Translates to: FSSAVSRGVFPRVAVVDPHFPKT*TLPTAL
Trigger: TAATGCAGTGGGCAGTGTCCACGTTTTTGGAAAATG...TGGATCAACAACTGCTACTCTCGGGAAGACTCCTCTACTCACAGCTGAAGAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR GCA 90 bp GGAAGTTTCCATCCAGTCTGGTTTAGGTGCTCTTCTTTTCTTCACCCAGTAAATGTGGACACTGCCCACTaGATTAAGTTTAAAGTGCTC +
Preference number: 4 (lower is better)
Translates to: GSFHPVWFRCSSFLHPVNVDTAH*IKFKVL
Trigger: GAGCACTTTAAACTTAATGCAGTGGGCAGTGTCCAC...ATTTACTGGGTGAAGAAAAGAAGAGCACCTAAACCAGACTGGATGGAAACTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000513339.5
CDS-3UTR CCA 90 bp TATACTACGGAAACAACCAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTACCACACCAGCACAATaGTTCCTCCAGCTTTTGGCA +
Preference number: 4 (lower is better)
Translates to: YTTETTRPISIRFHFSLCTTPAQ*FLQLLA
Trigger: TGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGT...ACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR TCA 90 bp GGTATTCATATGCCATATACTACGGAAACAACCAGGCCAATCTCCATTCGATTTAGAATTCAGCAATGCTaGACACACCATACACTACCC +
Preference number: 4 (lower is better)
Translates to: GIHMPYTTETTRPISIRFRIQQC*THHTLP
Trigger: GGGTAGTGTATGGTGTGTTCAGCATTGCTGAATTCT...AAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTATATGGCATATGAATACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR TCA 90 bp CTATTGCCAAGCAGATTATGGGTTACTTTATACTTCCTTTCATTCTCCCAGAATGGAAGAAAGGACGGATaGTGCGCTTGTAGAGCAGTT +
Preference number: 4 (lower is better)
Translates to: LLPSRLWVTLYFLSFSQNGRKDG*CACRAV
Trigger: AACTGCTCTACAAGCGCATCATCCGTCCTTTCTTCC...ATTCTGGGAGAATGAAAGGAAGTATAAAGTAACCCATAATCTGCTTGGCAATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR GCA 90 bp GTGGACACTGCCCACTGCATTAAGTTTAAAGTGCTCCCTATATATATAGACAGTGTGGACACTGCCCACTaGATTAAGTTTAAAGTGCTC +
Preference number: 4 (lower is better)
Translates to: VDTAHCIKFKVLPIYIDSVDTAH*IKFKVL
Trigger: GAGCACTTTAAACTTAATGCAGTGGGCAGTGTCCAC...ACTGTCTATATATATAGGGAGCACTTTAAACTTAATGCAGTGGGCAGTGTCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR TCA 90 bp TTGCTCTCTATAACGATTTGGCAGATCAATGGAGACATCCGTTTTAACTTTACTCATTTTCTTCAGCTGTaGGTAGAGGAGTCTTCCCGA +
Preference number: 4 (lower is better)
Translates to: LLSITIWQINGDIRFNFTHFLQL*VEESSR
Trigger: TCGGGAAGACTCCTCTACTCACAGCTGAAGAAAATG...AGTAAAGTTAAAACGGATGTCTCCATTGATCTGCCAAATCGTTATAGAGAGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CCA 90 bp GGTATTCATATGCCATATACTACGGAAACAACCAGGCCAATCTCCATTCGATTTCATTTTCCAAAAACGTaGACACTGCCCACTGCATTA +
Preference number: 4 (lower is better)
Translates to: GIHMPYTTETTRPISIRFHFPKT*TLPTAL
Trigger: TAATGCAGTGGGCAGTGTCCACGTTTTTGGAAAATG...AAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTATATGGCATATGAATACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CCA 90 bp TACTACGGAAACAACCAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTCAGTTTCCATCCAGTCTaGTTTAGGTGCTCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: YYGNNQANLHSISFLTLFSFHPV*FRCSSF
Trigger: AAAAGAAGAGCACCTAAACCAGACTGGATGGAAACT...GAACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
3UTR CAA 72 bp ATGGGTTACTTTATACTTCCTTTCATTCTCCCAGAATaGCTCTTAGAGCTAGGTGTCGTCATTAGCATGTTG +
Preference number: 4 (lower is better)
Translates to: MGYFILPFILPE*LLELGVVISML
Trigger: CAACATGCTAATGACGACACCTAGCTCTAAGAGCAATTCTGGGAGAATGAAAGGAAGTATAAAGTAACCCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR TCA 90 bp AAATTGCTCTCTATAACGATTTGGCAGATCAATGGAGACATCCGTTTTAACTTTAGAATTCAGCAATGCTaGACACACCATACACTACCC +
Preference number: 4 (lower is better)
Translates to: KLLSITIWQINGDIRFNFRIQQC*THHTLP
Trigger: GGGTAGTGTATGGTGTGTTCAGCATTGCTGAATTCT...AAAGTTAAAACGGATGTCTCCATTGATCTGCCAAATCGTTATAGAGAGCAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR TCA 90 bp GGAAGTAGAACCATAAAGATTATCCTAAATGTAACTACAGAGAAAATGCGTGCAGTAGAAGGGGAACCATaGCAGGAAGATATCAGAGAA +
Preference number: 4 (lower is better)
Translates to: GSRTIKIILNVTTEKMRAVEGEP*QEDIRE
Trigger: TTCTCTGATATCTTCCTGTCATGGTTCCCCTTCTAC...TGCACGCATTTTCTCTGTAGTTACATTTAGGATAATCTTTATGGTTCTACTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR TCA 90 bp TACTACGGAAACAACCAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTCTACAGAAGTTATAAATaGCACATACAACCTTCCCCT +
Preference number: 4 (lower is better)
Translates to: YYGNNQANLHSISFLTLFYRSYK*HIQPSP
Trigger: AGGGGAAGGTTGTATGTGTCATTTATAACTTCTGTA...GAACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR GCA 90 bp AATGGAGACATCCGTTTTAACTTTACTGTTCTGTACTTACTATGTAGTCATGTGTTTAGTGATGGCATCTaGAGTCTCTTTGGCCTTGTC +
Preference number: 4 (lower is better)
Translates to: NGDIRFNFTVLYLLCSHVFSDGI*SLFGLV
Trigger: GACAAGGCCAAAGAGACTGCAGATGCCATCACTAAA...CACATGACTACATAGTAAGTACAGAACAGTAAAGTTAAAACGGATGTCTCCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CCA 90 bp GGAAGTAGAACCATAAAGATTATCCTAAATGTAACTACAGAGAAAATGCGTGCACCAGCTTTTGGCAGGTaGTCTTACTGTACAGAAGTT +
Preference number: 4 (lower is better)
Translates to: GSRTIKIILNVTTEKMRAPAFGR*SYCTEV
Trigger: AACTTCTGTACAGTAAGACCACCTGCCAAAAGCTGG...TGCACGCATTTTCTCTGTAGTTACATTTAGGATAATCTTTATGGTTCTACTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR TCA 90 bp ATTTATTTCCATTCAGTGTATCACATCTTCAGGATAGGTGATAACAGTGTGAAGTATGCTAGAAGTTGCTaGTTTTCATTCTGCCACCAA +
Preference number: 4 (lower is better)
Translates to: IYFHSVYHIFRIGDNSVKYARSC*FSFCHQ
Trigger: TTGGTGGCAGAATGAAAATCAGCAACTTCTAGCATA...CTTCACACTGTTATCACCTATCCTGAAGATGTGATACACTGAATGGAAATAAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR TCA 90 bp AAATTGCTCTCTATAACGATTTGGCAGATCAATGGAGACATCCGTTTTAACTTTTACAGAAGTTATAAATaGCACATACAACCTTCCCCT +
Preference number: 4 (lower is better)
Translates to: KLLSITIWQINGDIRFNFYRSYK*HIQPSP
Trigger: AGGGGAAGGTTGTATGTGTCATTTATAACTTCTGTA...AAAGTTAAAACGGATGTCTCCATTGATCTGCCAAATCGTTATAGAGAGCAATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS GCA 90 bp CGCCGGGCCGCGGGGCAGACATACGTCAGCGCTGGCCCTTCCAGCTaGCAGCGCCCGGCGCCGCAGCTGCCCTCCAGCCCCGCGACCCTC +
Preference number: 5 (lower is better)
Translates to: RRAAGQTYVSAGPSS*QRPAPQLPSSPATL
Trigger: GAGGGTCGCGGGGCTGGAGGGCAGCTGCGGCGCCGGGCGCTGGCAGCTGGAAGGGCCAGCGCTGACGTATGTCTGCCCCGCGGCCCGGCG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000261482.8
CDS TCA 90 bp CCCCCGCGGGGTCCTCCGATGCCCACGCTTTCCGGGAGGCCAGCCTaGTCCCTGAATATGCTGCTTGTCCCGTCTGTCTCCGACTCCACC +
Preference number: 5 (lower is better)
Translates to: PPRGPPMPTLSGRPA*SLNMLLVPSVSDST
Trigger: GGTGGAGTCGGAGACAGACGGGACAAGCAGCATATTCAGGGATCAGGCTGGCCTCCCGGAAAGCGTGGGCATCGGAGGACCCCGCGGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000261482.8
CDS CCA 90 bp TCTCGTGCAGGAACCGGTCGAACCTCTCCCTCATGGCCGCAGACATaGCGGGGACCGTCTCGCCGCTCGGGGCTGTTCCTAGTGCCGGAT +
Preference number: 5 (lower is better)
Translates to: SRAGTGRTSPSWPQT*RGPSRRSGLFLVPD
Trigger: ATCCGGCACTAGGAACAGCCCCGAGCGGCGAGACGGTCCCCGCCATGTCTGCGGCCATGAGGGAGAGGTTCGACCGGTTCCTGCACGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000504247.1
CDS CCA 90 bp TCATGCAGTTCTTCTCGTGCAGGAACCGGTCGAACCTCTCCCTCATaGCCGCAGACATGGCGGGGACCGTCTCGCCGCTCGGGGCTGTTC +
Preference number: 5 (lower is better)
Translates to: SCSSSRAGTGRTSPS*PQTWRGPSRRSGLF
Trigger: GAACAGCCCCGAGCGGCGAGACGGTCCCCGCCATGTCTGCGGCCATGAGGGAGAGGTTCGACCGGTTCCTGCACGAGAAGAACTGCATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS TCA 90 bp GGGGTCCTCCGATGCCCACGCTTTCCGGGAGGCCAGCCTGATCCCTaGATATGCTGCTTGTCCCGTCTGTCTCCGACTCCACCTTTCCCG +
Preference number: 5 (lower is better)
Translates to: GVLRCPRFPGGQPDP*ICCLSRLSPTPPFP
Trigger: CGGGAAAGGTGGAGTCGGAGACAGACGGGACAAGCAGCATATTCAGGGATCAGGCTGGCCTCCCGGAAAGCGTGGGCATCGGAGGACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000261482.8
CDS CCA 90 bp ATGAGAGCCGTTCACGCGGGACAGCCGCCGCCCACACCGCGAGGCTaGGCCTGTTGTAGGAGTTTTCCTCTCGACTCGATTAAAGGAGCG +
Preference number: 5 (lower is better)
Translates to: MRAVHAGQPPPTPRG*ACCRSFPLDSIKGA
Trigger: CGCTCCTTTAATCGAGTCGAGAGGAAAACTCCTACAACAGGCCCAGCCTCGCGGTGTGGGCGGCGGCTGTCCCGCGTGAACGGCTCTCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000474542.2
ENST00000497856.6
CDS GCA 90 bp TTGGCCTCGAGCTTGGCCAGAAGGTCAGTCATGCAGTTCTTCTCGTaGAGGAACCGGTCGAACCTCTCCCTCATGGCCGCAGACATGGCG +
Preference number: 5 (lower is better)
Translates to: LASSLARRSVMQFFS*RNRSNLSLMAADMA
Trigger: CGCCATGTCTGCGGCCATGAGGGAGAGGTTCGACCGGTTCCTGCACGAGAAGAACTGCATGACTGACCTTCTGGCCAAGCTCGAGGCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS CCA 90 bp TCCATAACCGAACACCAGGTACAAGGCCACCAGTCCGATGACACCTaGGGACCACAAGGAGAGAAGTGGGTCGGGCAGCATGAGAGCCGT +
Preference number: 5 (lower is better)
Translates to: SITEHQVQGHQSDDT*GPQGEKWVGQHESR
Trigger: ACGGCTCTCATGCTGCCCGACCCACTTCTCTCCTTGTGGTCCCCAGGTGTCATCGGACTGGTGGCCTTGTACCTGGTGTTCGGTTATGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000474542.2
ENST00000497856.6
CDS GCA 90 bp TGTTCACGCCGGTTTTGGCCTCGAGCTTGGCCAGAAGGTCAGTCATaGAGTTCTTCTCGTGCAGGAACCGGTCGAACCTCTCCCTCATGG +
Preference number: 5 (lower is better)
Translates to: CSRRFWPRAWPEGQS*SSSRAGTGRTSPSW
Trigger: CCATGAGGGAGAGGTTCGACCGGTTCCTGCACGAGAAGAACTGCATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS-3UTR CAA 90 bp CTTGACCACACTGTCCATCTGGGACTCGTGCTTCAGGAAGAAAGGACGGATGATCTGTTCACGCCGGTTTaGGCCTCGAGCTTGGCCAGA +
Preference number: 5 (lower is better)
Translates to: LDHTVHLGLVLQEERTDDLFTPV*ASSLAR
Trigger: TCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACAG...ATCATCCGTCCTTTCTTCCTGAAGCACGAGTCCCAGATGGACAGTGTGGTCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000511865.6
CDS-3UTR CAA 90 bp CACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGTCTGTTCACGCCGGTTTaGGCCTCGAGCTTGGCCAGA +
Preference number: 5 (lower is better)
Translates to: HQHNGSSSFWQVVLLYRSLFTPV*ASSLAR
Trigger: TCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACAG...ACTTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CAA 90 bp GACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGTTTTGGCCTCGAGCTaGGCCAGAAGGTCAGTCATG +
Preference number: 5 (lower is better)
Translates to: DHTSTMVPPAFGRWSYCTVLASS*ARRSVM
Trigger: CATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAAC...TGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CAA 90 bp ACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGCCAAATCCTATCAGGTaGCAGAGGAGAGAGGCTCCA +
Preference number: 5 (lower is better)
Translates to: TTPAQWFLQLLAGGLTVQPNPIR*QRREAP
Trigger: TGGAGCCTCTCTCCTCTGCAACCTGATAGGATTTGG...CTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CAA 90 bp ACCACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGTTGTCTTTAAGGTCCTaGACCACACTGTCCATCTGG +
Preference number: 5 (lower is better)
Translates to: TTPAQWFLQLLAGGLTVQLSLRS*TTLSIW
Trigger: CCAGATGGACAGTGTGGTCAAGGACCTTAAAGACAA...CTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CAA 90 bp TATACCACAGTCCCTAATATAACATCAAGCTCCAGTAGGAAGGTACAGAGAGGGCCAAATCCTATCAGGTaGCAGAGGAGAGAGGCTCCA +
Preference number: 5 (lower is better)
Translates to: YTTVPNITSSSSRKVQRGPNPIR*QRREAP
Trigger: TGGAGCCTCTCTCCTCTGCAACCTGATAGGATTTGG...CCCTCTCTGTACCTTCCTACTGGAGCTTGATGTTATATTAGGGACTGTGGTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000379638.9
ENST00000511865.6
ENST00000513339.5
CDS-3UTR CAA 90 bp GGAAGTTTCCATCCAGTCTGGTTTAGGTGCTCTTCTTTTCTTCACCCAGTAAATGTTTTGGCCTCGAGCTaGGCCAGAAGGTCAGTCATG +
Preference number: 5 (lower is better)
Translates to: GSFHPVWFRCSSFLHPVNVLASS*ARRSVM
Trigger: CATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAAC...ATTTACTGGGTGAAGAAAAGAAGAGCACCTAAACCAGACTGGATGGAAACTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000511865.6
ENST00000513339.5
CDS TCA 90 bp CCACAACAGGAAGCCACACTTCAGCATGTAGTAGAAGGGGAACCATaGCAGGAAGATATCAGAGAAGAATTCAGCAATGCTGAACACACC +
Preference number: 5 (lower is better)
Translates to: PQQEATLQHVVEGEP*QEDIREEFSNAEHT
Trigger: GGTGTGTTCAGCATTGCTGAATTCTTCTCTGATATCTTCCTGTCATGGTTCCCCTTCTACTACATGCTGAAGTGTGGCTTCCTGTTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000261482.8
ENST00000379638.9
ENST00000474542.2
CDS-3UTR CAA 90 bp CACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAGTTGGGTATCATCTTCTTaGTTGGGACTCTCTATAGCT +
Preference number: 5 (lower is better)
Translates to: HQHNGSSSFWQVVLLYRSWVSSS*LGLSIA
Trigger: AGCTATAGAGAGTCCCAACAAAGAAGATGATACCCA...ACTTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CAA 90 bp AGGAAGGTACAGAGAGGGCAGGAAGTTTCCATCCAGTCTGGTTTAGGTGCTCTTTGGGTATCATCTTCTTaGTTGGGACTCTCTATAGCT +
Preference number: 5 (lower is better)
Translates to: RKVQRGQEVSIQSGLGALWVSSS*LGLSIA
Trigger: AGCTATAGAGAGTCCCAACAAAGAAGATGATACCCA...AAGAGCACCTAAACCAGACTGGATGGAAACTTCCTGCCCTCTCTGTACCTTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000511865.6
ENST00000513339.5
CDS-3UTR CAA 90 bp TATACCACAGTCCCTAATATAACATCAAGCTCCAGTAGGAAGGTACAGAGAGGGGCATCTGCAGTCTCTTaGGCCTTGTCTTTAAGGTCC +
Preference number: 5 (lower is better)
Translates to: YTTVPNITSSSSRKVQRGASAVS*ALSLRS
Trigger: GGACCTTAAAGACAAGGCCAAAGAGACTGCAGATGC...CCCTCTCTGTACCTTCCTACTGGAGCTTGATGTTATATTAGGGACTGTGGTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000511865.6
CDS-3UTR CAA 90 bp CAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTCACTTGCATATTAATCCTGTTCACGCCGGTTTaGGCCTCGAGCTTGGCCAGA +
Preference number: 5 (lower is better)
Translates to: QANLHSISFLTLFTCILILFTPV*ASSLAR
Trigger: TCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACAG...GATTAATATGCAAGTGAACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CAA 90 bp CCTCCCCATGAGCATGATGCATGTTGTAGTCAGACAGTAACATTTCCATATGTAGCATCTGCAGTCTCTTaGGCCTTGTCTTTAAGGTCC +
Preference number: 5 (lower is better)
Translates to: PPHEHDACCSQTVTFPYVASAVS*ALSLRS
Trigger: GGACCTTAAAGACAAGGCCAAAGAGACTGCAGATGC...TACATATGGAAATGTTACTGTCTGACTACAACATGCATCATGCTCATGGGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CAA 90 bp TTTTCTTCAGCTGTGAGTAGAGGAGTCTTCCCGAGAGTAGCAGTTGTTGATCCATTCATTCTCCCAGAATaGCTCTTAGAGCTAGGTGTC +
Preference number: 5 (lower is better)
Translates to: FSSAVSRGVFPRVAVVDPFILPE*LLELGV
Trigger: GACACCTAGCTCTAAGAGCAATTCTGGGAGAATGAA...TGGATCAACAACTGCTACTCTCGGGAAGACTCCTCTACTCACAGCTGAAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CAA 90 bp CACACCAGCACAATGGTTCCTCCAGCTTTTGGCAGGTGGTCTTACTGTACAGAAAAGGCAGTATTTCATTaGGGAAATCATGCAACAGAA +
Preference number: 5 (lower is better)
Translates to: HTSTMVPPAFGRWSYCTEKAVFH*GNHATE
Trigger: TTCTGTTGCATGATTTCCCAAATGAAATACTGCCTT...TTCTGTACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCATTGTGCTGGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CAA 90 bp GTACAGAGAGGGCAGGAAGTTTCCATCCAGTCTGGTTTAGGTGCTCTTCTTTTCGTATCATCTTCTTTGTaGGGACTCTCTATAGCTTTA +
Preference number: 5 (lower is better)
Translates to: VQRGQEVSIQSGLGALLFVSSSL*GLSIAL
Trigger: TAAAGCTATAGAGAGTCCCAACAAAGAAGATGATAC...GAAAAGAAGAGCACCTAAACCAGACTGGATGGAAACTTCCTGCCCTCTCTGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000511865.6
ENST00000513339.5
CDS-3UTR CAA 90 bp GGAAGTAGAACCATAAAGATTATCCTAAATGTAACTACAGAGAAAATGCGTGCACCAAATCCTATCAGGTaGCAGAGGAGAGAGGCTCCA +
Preference number: 5 (lower is better)
Translates to: GSRTIKIILNVTTEKMRAPNPIR*QRREAP
Trigger: TGGAGCCTCTCTCCTCTGCAACCTGATAGGATTTGG...TGCACGCATTTTCTCTGTAGTTACATTTAGGATAATCTTTATGGTTCTACTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CAA 90 bp CTATTGCCAAGCAGATTATGGGTTACTTTATACTTCCTTTCATTCTCCCAGAATTGGTTCCTCCAGCTTTaGGCAGGTGGTCTTACTGTA +
Preference number: 5 (lower is better)
Translates to: LLPSRLWVTLYFLSFSQNWFLQL*AGGLTV
Trigger: TACAGTAAGACCACCTGCCAAAAGCTGGAGGAACCA...ATTCTGGGAGAATGAAAGGAAGTATAAAGTAACCCATAATCTGCTTGGCAATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CAA 90 bp GGTATTCATATGCCATATACTACGGAAACAACCAGGCCAATCTCCATTCGATTTTGGGTATCATCTTCTTaGTTGGGACTCTCTATAGCT +
Preference number: 5 (lower is better)
Translates to: GIHMPYTTETTRPISIRFWVSSS*LGLSIA
Trigger: AGCTATAGAGAGTCCCAACAAAGAAGATGATACCCA...AAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTATATGGCATATGAATACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CAA 90 bp CAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTTCACTTGCATATTAATCGGAAGCCTCTTGTGTTaGACCTTAAAGGCCAGAGAA +
Preference number: 5 (lower is better)
Translates to: QANLHSISFLTLFTCILIGSLLC*TLKARE
Trigger: TTCTCTGGCCTTTAAGGTCAAACACAAGAGGCTTCC...GATTAATATGCAAGTGAACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CAA 90 bp CCTCCCCATGAGCATGATGCATGTTGTAGTCAGACAGTAACATTTCCATATGTAGTATCATCTTCTTTGTaGGGACTCTCTATAGCTTTA +
Preference number: 5 (lower is better)
Translates to: PPHEHDACCSQTVTFPYVVSSSL*GLSIAL
Trigger: TAAAGCTATAGAGAGTCCCAACAAAGAAGATGATAC...TACATATGGAAATGTTACTGTCTGACTACAACATGCATCATGCTCATGGGGAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379638.9
ENST00000513339.5
CDS-3UTR CAA 90 bp GGTATTCATATGCCATATACTACGGAAACAACCAGGCCAATCTCCATTCGATTTTCTAGTCCAGACAAATaGCTCTCTATAACGATTTGG +
Preference number: 5 (lower is better)
Translates to: GIHMPYTTETTRPISIRFSSPDK*LSITIW
Trigger: CCAAATCGTTATAGAGAGCAATTTGTCTGGACTAGA...AAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTATATGGCATATGAATACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CAA 90 bp TATACTACGGAAACAACCAGGCCAATCTCCATTCGATTTCATTTCTCACTTTGTACATGTTTCTCCGCTTaGAAGATAAAACCAGAAATG +
Preference number: 5 (lower is better)
Translates to: YTTETTRPISIRFHFSLCTCFSA*KIKPEM
Trigger: CATTTCTGGTTTTATCTTCAAAGCGGAGAAACATGT...ACAAAGTGAGAAATGAAATCGAATGGAGATTGGCCTGGTTGTTTCCGTAGTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS-3UTR CAA 90 bp GGAAGTAGAACCATAAAGATTATCCTAAATGTAACTACAGAGAAAATGCGTGCAGCTCTCTATAACGATTaGGCAGATCAATGGAGACAT +
Preference number: 5 (lower is better)
Translates to: GSRTIKIILNVTTEKMRAALYND*ADQWRH
Trigger: ATGTCTCCATTGATCTGCCAAATCGTTATAGAGAGC...TGCACGCATTTTCTCTGTAGTTACATTTAGGATAATCTTTATGGTTCTACTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379638.9
CDS CCA 72 bp AGGGCGCCGGGCCGCGGGGCAGACATACGTCAGCGCTaGCCCTTCCAGCTGCCAGCGCCCGGCGCCGCAGCT +
Preference number: 6 (lower is better)
Translates to: RAPGRGADIRQR*PFQLPAPGAAA
Trigger: AGCTGCGGCGCCGGGCGCTGGCAGCTGGAAGGGCCAGCGCTGACGTATGTCTGCCCCGCGGCCCGGCGCCCT
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000261482.8
CDS CCA 72 bp GGAACCGGTCGAACCTCTCCCTCATGGCCGCAGACATaGCGGGGACCGTCTCGCCGCTCGGGGCTGTTCCTA +
Preference number: 6 (lower is better)
Translates to: GTGRTSPSWPQT*RGPSRRSGLFL
Trigger: TAGGAACAGCCCCGAGCGGCGAGACGGTCCCCGCCATGTCTGCGGCCATGAGGGAGAGGTTCGACCGGTTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS CCA 72 bp TCTTCTCGTGCAGGAACCGGTCGAACCTCTCCCTCATaGCCGCAGACATGGCGGGGACCGTCTCGCCGCTCG +
Preference number: 6 (lower is better)
Translates to: SSRAGTGRTSPS*PQTWRGPSRRS
Trigger: CGAGCGGCGAGACGGTCCCCGCCATGTCTGCGGCCATGAGGGAGAGGTTCGACCGGTTCCTGCACGAGAAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS GCA 72 bp CCACACGAAAGCTGGGCCTGCGCGTCCGCTGGGCTATaGCTTGAAGTCTGGGGATACCAGGCAGCCCCACCA +
Preference number: 6 (lower is better)
Translates to: PHESWACASAGL*LEVWGYQAAPP
Trigger: TGGTGGGGCTGCCTGGTATCCCCAGACTTCAAGGCATAGCCCAGCGGACGCGCAGGCCCAGCTTTCGTGTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000474542.2
ENST00000497856.6
CDS CCA 72 bp GTTCACGCGGGACAGCCGCCGCCCACACCGCGAGGCTaGGCCTGTTGTAGGAGTTTTCCTCTCGACTCGATT +
Preference number: 6 (lower is better)
Translates to: VHAGQPPPTPRG*ACCRSFPLDSI
Trigger: AATCGAGTCGAGAGGAAAACTCCTACAACAGGCCCAGCCTCGCGGTGTGGGCGGCGGCTGTCCCGCGTGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000474542.2
ENST00000497856.6
CDS TCA 72 bp GGTCCTCCGATGCCCACGCTTTCCGGGAGGCCAGCCTaGTCCCTGAATATGCTGCTTGTCCCGTCTGTCTCC +
Preference number: 6 (lower is better)
Translates to: GPPMPTLSGRPA*SLNMLLVPSVS
Trigger: GGAGACAGACGGGACAAGCAGCATATTCAGGGATCAGGCTGGCCTCCCGGAAAGCGTGGGCATCGGAGGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000261482.8
CDS CAA 90 bp ACAAACCACACGAAAGCTGGGCCTGCGCGTCCGCTGGGCTATGCCTaGAAGTCTGGGGATACCAGGCAGCCCCACCATTGTGCCTCTCCT +
Preference number: 6 (lower is better)
Translates to: TNHTKAGPARPLGYA*KSGDTRQPHHCASP
Trigger: AGGAGAGGCACAATGGTGGGGCTGCCTGGTATCCCCAGACTTCAAGGCATAGCCCAGCGGACGCGCAGGCCCAGCTTTCGTGTGGTTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000474542.2
ENST00000497856.6
CDS TCA 72 bp CGATGCCCACGCTTTCCGGGAGGCCAGCCTGATCCCTaGATATGCTGCTTGTCCCGTCTGTCTCCGACTCCA +
Preference number: 6 (lower is better)
Translates to: RCPRFPGGQPDP*ICCLSRLSPTP
Trigger: TGGAGTCGGAGACAGACGGGACAAGCAGCATATTCAGGGATCAGGCTGGCCTCCCGGAAAGCGTGGGCATCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000261482.8
CDS CAA 90 bp CCAAGAGCGATGAAGCTCCTGTTCACGCCGGTTTTGGCCTCGAGCTaGGCCAGAAGGTCAGTCATGCAGTTCTTCTCGTGCAGGAACCGG +
Preference number: 6 (lower is better)
Translates to: PRAMKLLFTPVLASS*ARRSVMQFFSCRNR
Trigger: CCGGTTCCTGCACGAGAAGAACTGCATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACAGGAGCTTCATCGCTCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS TCA 72 bp CATAACCGAACACCAGGTACAAGGCCACCAGTCCGATaGCACCTGGGGACCACAAGGAGAGAAGTGGGTCGG +
Preference number: 6 (lower is better)
Translates to: HNRTPGTRPPVR*HLGTTRREVGR
Trigger: CCGACCCACTTCTCTCCTTGTGGTCCCCAGGTGTCATCGGACTGGTGGCCTTGTACCTGGTGTTCGGTTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000474542.2
ENST00000497856.6
CDS GCA 72 bp AGCTTGGCCAGAAGGTCAGTCATGCAGTTCTTCTCGTaGAGGAACCGGTCGAACCTCTCCCTCATGGCCGCA +
Preference number: 6 (lower is better)
Translates to: SLARRSVMQFFS*RNRSNLSLMAA
Trigger: TGCGGCCATGAGGGAGAGGTTCGACCGGTTCCTGCACGAGAAGAACTGCATGACTGACCTTCTGGCCAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS GCA 72 bp AGGAGCGAGAAAAACAAACCACACGAAAGCTGGGCCTaGGCGTCCGCTGGGCTATGCCTTGAAGTCTGGGGA +
Preference number: 6 (lower is better)
Translates to: RSEKNKPHESWA*ASAGLCLEVWG
Trigger: TCCCCAGACTTCAAGGCATAGCCCAGCGGACGCGCAGGCCCAGCTTTCGTGTGGTTTGTTTTTCTCGCTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000474542.2
ENST00000497856.6
CDS GCA 72 bp CGGTTTTGGCCTCGAGCTTGGCCAGAAGGTCAGTCATaGAGTTCTTCTCGTGCAGGAACCGGTCGAACCTCT +
Preference number: 6 (lower is better)
Translates to: RFWPRAWPEGQS*SSSRAGTGRTS
Trigger: AGAGGTTCGACCGGTTCCTGCACGAGAAGAACTGCATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS CAA 72 bp ACACCAAGAGCGATGAAGCTCCTGTTCACGCCGGTTTaGGCCTCGAGCTTGGCCAGAAGGTCAGTCATGCAG +
Preference number: 6 (lower is better)
Translates to: TPRAMKLLFTPV*ASSLARRSVMQ
Trigger: CTGCATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACAGGAGCTTCATCGCTCTTGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS CAA 90 bp AGTCCGATGACACCAAGAGCGATGAAGCTCCTGTTCACGCCGGTTTaGGCCTCGAGCTTGGCCAGAAGGTCAGTCATGCAGTTCTTCTCG +
Preference number: 6 (lower is better)
Translates to: SPMTPRAMKLLFTPV*ASSLARRSVMQFFS
Trigger: CGAGAAGAACTGCATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACAGGAGCTTCATCGCTCTTGGTGTCATCGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS CAA 72 bp ATGAAGCTCCTGTTCACGCCGGTTTTGGCCTCGAGCTaGGCCAGAAGGTCAGTCATGCAGTTCTTCTCGTGC +
Preference number: 6 (lower is better)
Translates to: MKLLFTPVLASS*ARRSVMQFFSC
Trigger: GCACGAGAAGAACTGCATGACTGACCTTCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACAGGAGCTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379638.9
ENST00000504247.1
ENST00000511865.6
ENST00000513339.5
CDS TCA 72 bp GAAGCCACACTTCAGCATGTAGTAGAAGGGGAACCATaGCAGGAAGATATCAGAGAAGAATTCAGCAATGCT +
Preference number: 6 (lower is better)
Translates to: EATLQHVVEGEP*QEDIREEFSNA
Trigger: AGCATTGCTGAATTCTTCTCTGATATCTTCCTGTCATGGTTCCCCTTCTACTACATGCTGAAGTGTGGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000261482.8
ENST00000379638.9
ENST00000474542.2
CDS TCA 72 bp AGACCACACCTTCAGCATGTAGTAGAAGGGGAACCATaGCAGGAAGATATCAGAGAAGAATTCAGCAATGCT +
Preference number: 6 (lower is better)
Translates to: RPHLQHVVEGEP*QEDIREEFSNA
Trigger: AGCATTGCTGAATTCTTCTCTGATATCTTCCTGTCATGGTTCCCCTTCTACTACATGCTGAAGGTGTGGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000497856.6
ENST00000511865.6
CDS TCA 72 bp CTTTCTTCGCTTCAGCATGTAGTAGAAGGGGAACCATaGCAGGAAGATATCAGAGAAGAATTCAGCAATGCT +
Preference number: 6 (lower is better)
Translates to: LSSLQHVVEGEP*QEDIREEFSNA
Trigger: AGCATTGCTGAATTCTTCTCTGATATCTTCCTGTCATGGTTCCCCTTCTACTACATGCTGAAGCGAAGAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000513339.5