Pregenerated sensors for RCN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000049449Ensembl transcript IDs: ENST00000527337.1, ENST00000531345.1, ENST00000532474.5, ENST00000532721.1, ENST00000533898.5
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TCCTCATGGGAAAACATATCCGTCAAACAGCTGGTAGGCAGCTTCTTGGGGATATTTGACTTAGTTCAGTaGCTGAGCCTGAAGTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SSWENISVKQLVGSFLGIFDLVQ*LSLKFP Trigger: AGGAAACTTCAGGCTCAGTCACTGAACTAAGTCAAA...TATCCCCAAGAAGCTGCCTACCAGCTGTTTGACGGATATGTTTTCCCATGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000527337.1 |
||
| CDS-3UTR TCA 90 bp | TCCTCATGGGAAAACATATCCGTCAAACAGCTGGTAGGCAGCTTCTTGGGGATAATAAATCCCGGCTTTTaGCTTAGTTCAGTGACTGAG | + |
|
Preference number: 4 (lower is better) Translates to: SSWENISVKQLVGSFLGIINPGF*LSSVTE Trigger: CTCAGTCACTGAACTAAGTCAAAAGCCGGGATTTAT...TATCCCCAAGAAGCTGCCTACCAGCTGTTTGACGGATATGTTTTCCCATGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000527337.1 |
||
| CDS TCA 90 bp | ACACTTTCCACTTGGTGCCGCTTGAAGAGAAGCCTCCCCGAGAAGTaGAATGACGAGTCAATACATTGGGTTTCCTCTGCCTGTGAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: TLSTWCRLKRSLPEK*NDESIHWVSSACES Trigger: TGACTCACAGGCAGAGGAAACCCAATGTATTGACTCGTCATTTCACTTCTCGGGGAGGCTTCTCTTCAAGCGGCACCAAGTGGAAAGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531345.1 |
||
| CDS TCA 90 bp | ATCCAAGGAGGCTGGAAGGAATCTTCAAGTTTATCCTTCCAAGGTTaGTGTGCTTTCCCCCAACCAGTGCTGATGGCAGACACTGCTAAT | + |
|
Preference number: 5 (lower is better) Translates to: IQGGWKESSSLSFQG*CAFPQPVLMADTAN Trigger: ATTAGCAGTGTCTGCCATCAGCACTGGTTGGGGGAAAGCACATCAACCTTGGAAGGATAAACTTGAAGATTCCTTCCAGCCTCCTTGGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS GCA 90 bp | TTGCATTGTGTGTGTGTCAGTAGCTCTTGGAAAAGAGAGATACCCTaGAGGCAGTTTCTCTGTCACGGAAGCAGAGCTTGGAAATGTCAG | + |
|
Preference number: 5 (lower is better) Translates to: LHCVCVSSSWKREIP*RQFLCHGSRAWKCQ Trigger: CTGACATTTCCAAGCTCTGCTTCCGTGACAGAGAAACTGCCTGCAGGGTATCTCTCTTTTCCAAGAGCTACTGACACACACACAATGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531345.1 |
||
| CDS TCA 90 bp | ACACCTGCACAATCCAAAATGCACATACAACTACAACAGAATCAATaGTCCAAGGAGGCTGGAAGGAATCTTCAAGTTTATCCTTCCAAG | + |
|
Preference number: 5 (lower is better) Translates to: TPAQSKMHIQLQQNQ*SKEAGRNLQVYPSK Trigger: CTTGGAAGGATAAACTTGAAGATTCCTTCCAGCCTCCTTGGATCATTGATTCTGTTGTAGTTGTATGTGCATTTTGGATTGTGCAGGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS TCA 72 bp | CCTTCCAAGGTTGATGTGCTTTCCCCCAACCAGTGCTaGTGGCAGACACTGCTAATGGATCGTGCCCCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: PSKVDVLSPNQC*WQTLLMDRAPL Trigger: CAGAGGGGCACGATCCATTAGCAGTGTCTGCCATCAGCACTGGTTGGGGGAAAGCACATCAACCTTGGAAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS TCA 72 bp | ACTTGGTGCCGCTTGAAGAGAAGCCTCCCCGAGAAGTaGAATGACGAGTCAATACATTGGGTTTCCTCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: TWCRLKRSLPEK*NDESIHWVSSA Trigger: GGCAGAGGAAACCCAATGTATTGACTCGTCATTTCACTTCTCGGGGAGGCTTCTCTTCAAGCGGCACCAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531345.1 |
||
| CDS GCA 72 bp | GTGTGTGTCAGTAGCTCTTGGAAAAGAGAGATACCCTaGAGGCAGTTTCTCTGTCACGGAAGCAGAGCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: VCVSSSWKREIP*RQFLCHGSRAW Trigger: CCAAGCTCTGCTTCCGTGACAGAGAAACTGCCTGCAGGGTATCTCTCTTTTCCAAGAGCTACTGACACACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531345.1 |
||
| CDS CAA 72 bp | CAACAATCTTCAGGCCACTGTGGACAAACTCTTCTTTaGTGCACTCTCCCCTCCCTTCTGATGCAACCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: QQSSGHCGQTLL*CTLPSLLMQPG Trigger: CCCAGGTTGCATCAGAAGGGAGGGGAGAGTGCACAAAAGAAGAGTTTGTCCACAGTGGCCTGAAGATTGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532721.1 |
||
| CDS GCA 72 bp | GAAGGAATCTTCAAGTTTATCCTTCCAAGGTTGATGTaGTTTCCCCCAACCAGTGCTGATGGCAGACACTGC | + |
|
Preference number: 6 (lower is better) Translates to: EGIFKFILPRLM*FPPTSADGRHC Trigger: GCAGTGTCTGCCATCAGCACTGGTTGGGGGAAAGCACATCAACCTTGGAAGGATAAACTTGAAGATTCCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS CAA 72 bp | AGGCTGGAAGGAATCTTCAAGTTTATCCTTCCAAGGTaGATGTGCTTTCCCCCAACCAGTGCTGATGGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: RLEGIFKFILPR*MCFPPTSADGR Trigger: TCTGCCATCAGCACTGGTTGGGGGAAAGCACATCAACCTTGGAAGGATAAACTTGAAGATTCCTTCCAGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS GCA 72 bp | ATAAACCTAGAGGTGCTCTCAGAATTCTCAGCACTGTaGTCTGGTGATGGCCATTATCAACGGATCAGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: INLEVLSEFSAL*SGDGHYQRIRA Trigger: AGCTCTGATCCGTTGATAATGGCCATCACCAGAGCACAGTGCTGAGAATTCTGAGAGCACCTCTAGGTTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS TCA 72 bp | CACAGGCACAAGGCTGTTATATTATCAAGGCTTGTGTaGTGCTGGTCCAGCAAAAGATCAAACACCTGCACA | + |
|
Preference number: 6 (lower is better) Translates to: HRHKAVILSRLV*CWSSKRSNTCT Trigger: TGTGCAGGTGTTTGATCTTTTGCTGGACCAGCATCACACAAGCCTTGATAATATAACAGCCTTGTGCCTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS CAA 72 bp | CCACACACAGGCACAAGGCTGTTATATTATCAAGGCTaGTGTGATGCTGGTCCAGCAAAAGATCAAACACCT | + |
|
Preference number: 6 (lower is better) Translates to: PHTGTRLLYYQG*CDAGPAKDQTP Trigger: AGGTGTTTGATCTTTTGCTGGACCAGCATCACACAAGCCTTGATAATATAACAGCCTTGTGCCTGTGTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS CAA 90 bp | AAAAGAAACCCACACACAGGCACAAGGCTGTTATATTATCAAGGCTaGTGTGATGCTGGTCCAGCAAAAGATCAAACACCTGCACAATCC | + |
|
Preference number: 6 (lower is better) Translates to: KRNPHTGTRLLYYQG*CDAGPAKDQTPAQS Trigger: GGATTGTGCAGGTGTTTGATCTTTTGCTGGACCAGCATCACACAAGCCTTGATAATATAACAGCCTTGTGCCTGTGTGTGGGTTTCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS TCA 72 bp | CTAAGATTACACAGCCAGTATTTGGTAAAACTGGGGTaGGAACTCATGTCTTCTGGCTTAGGTCCAAGGCAA | + |
|
Preference number: 6 (lower is better) Translates to: LRLHSQYLVKLG*ELMSSGLGPRQ Trigger: TTGCCTTGGACCTAAGCCAGAAGACATGAGTTCTCACCCCAGTTTTACCAAATACTGGCTGTGTAATCTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS GCA 72 bp | GAGCTGATCTGTAAGATGAAACCTATTAATCTTCCCTaGTGTAGTCCAGCACCCTCATTTTGGAGTAACGGA | + |
|
Preference number: 6 (lower is better) Translates to: ELICKMKPINLP*CSPAPSFWSNG Trigger: TCCGTTACTCCAAAATGAGGGTGCTGGACTACAGCAGGGAAGATTAATAGGTTTCATCTTACAGATCAGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000533898.5 |
||
| CDS TCA 72 bp | ACTGAGTTTAGAAGCCAAAAGATAAATCCCGGCTTTTaGCTTAGTTCAGTGACTGAGCCTGAAGTTTCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: TEFRSQKINPGF*LSSVTEPEVSL Trigger: CAAGGAAACTTCAGGCTCAGTCACTGAACTAAGTCAAAAGCCGGGATTTATCTTTTGGCTTCTAAACTCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000527337.1 ENST00000531345.1 ENST00000532474.5 |
||