RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBMS1 (Homo sapiens)

Ensembl gene IDs: ENSG00000153250

Ensembl transcript IDs: ENST00000348849.8, ENST00000392753.7, ENST00000474147.5, ENST00000474820.5, ENST00000477965.1, ENST00000490637.5, ENST00000491781.5

Found 140 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTGAGACAAGTTaGAGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCT +
Preference number: 1 (lower is better)
Translates to: SGKNKEHRRCDAETS*SYWLLALRSLVKLP
Trigger: AGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCTCCAACTTGTCTCAGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR CCA 90 bp AATAAAGAGCACAGAAGATGTGATGCTGAGACAAGTTGGAGCTACTaGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTG +
Preference number: 1 (lower is better)
Translates to: NKEHRRCDAETSWSY*LLALRSLVKLPLKV
Trigger: CACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCTCCAACTTGTCTCAGCATCACATCTTCTGTGCTCTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR CCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTATCAGAGGAAACTGTTaGCGTACAGCCTTACAAACA +
Preference number: 2 (lower is better)
Translates to: LLTANWSGKNKEHRRCDAIRGNC*RTALQT
Trigger: TGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGAT...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR GCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTAGTAGCCAATCGTTTTaGTTCTATTCGTTATCTCAG +
Preference number: 2 (lower is better)
Translates to: LLTANWSGKNKEHRRCDASSQSF*FYSLSQ
Trigger: CTGAGATAACGAATAGAAGCAAAACGATTGGCTACT...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR TCA 90 bp TACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCACTTCACACTACGTTaGAAGAAAGACAGAAAGCTA +
Preference number: 2 (lower is better)
Translates to: YWLLALRSLVKLPLKVPSHFTLR*KKDRKL
Trigger: TAGCTTTCTGTCTTTCTTTCAACGTAGTGTGAAGTG...ACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR TCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGACACTTCACACTACGTTaGAAGAAAGACAGAAAGCTA +
Preference number: 2 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRHFTLR*KKDRKL
Trigger: TAGCTTTCTGTCTTTCTTTCAACGTAGTGTGAAGTG...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR GCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCACAACATTTTTCGGTTTaGCAGATTTCAGGCATAATT +
Preference number: 2 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPQHFSV*QISGII
Trigger: AATTATGCCTGAAATCTGGCAAACCGAAAAATGTTG...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR GCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCACTTACTTTTAGCTTTTaGCACTTTGTTGCAATAGCA +
Preference number: 2 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPLTFSF*HFVAIA
Trigger: TGCTATTGCAACAAAGTGGCAAAAGCTAAAAGTAAG...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR GCA 90 bp TACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCTTACTTTTAGCTTTTaGCACTTTGTTGCAATAGCA +
Preference number: 2 (lower is better)
Translates to: YWLLALRSLVKLPLKVPSLTFSF*HFVAIA
Trigger: TGCTATTGCAACAAAGTGGCAAAAGCTAAAAGTAAG...ACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR CCA 72 bp CACAGAAGATGTGATGCTGAGACAAGTTGGAGCTACTaGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCT +
Preference number: 3 (lower is better)
Translates to: HRRCDAETSWSY*LLALRSLVKLP
Trigger: AGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCTCCAACTTGTCTCAGCATCACATCTTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR CCA 72 bp AATAAAGAGCACAGAAGATGTGATGCTGAGACAAGTTaGAGCTACTGGTTACTGGCTCTTCGGTCTTTGGTG +
Preference number: 3 (lower is better)
Translates to: NKEHRRCDAETS*SYWLLALRSLV
Trigger: CACCAAAGACCGAAGAGCCAGTAACCAGTAGCTCCAACTTGTCTCAGCATCACATCTTCTGTGCTCTTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR CAA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCATATCAGAGGAAACTGTaGGCGTACAGCCTTACAAAC +
Preference number: 3 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPYQRKL*AYSLTN
Trigger: GTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATA...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR CAA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTGCAACATTTTTCGGTTaGCCAGATTTCAGGCATAAT +
Preference number: 3 (lower is better)
Translates to: LLTANWSGKNKEHRRCDAATFFG*PDFRHN
Trigger: ATTATGCCTGAAATCTGGCAAACCGAAAAATGTTGC...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR-3UTR CAA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAACATTTTTCCCTTCTaGCATTTCACTACCTTACAC +
Preference number: 3 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPNIFPF*HFTTLH
Trigger: GTGTAAGGTAGTGAAATGCAAGAAGGGAAAAATGTT...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTCTCCCGGAGCCCGACTaGTCCGGGGCTGCCAAGGGC +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDALPEPD*SGAAKG
Trigger: GCCCTTGGCAGCCCCGGAGCAGTCGGGCTCCGGGAG...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTGACTGGGAGGGGCCATaGGGTGGGCTGGGACCAGAG +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDADWEGP*GGLGPE
Trigger: CTCTGGTCCCAGCCCACCCCATGGCCCCTCCCAGTC...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCATGCTGCTGCTGCCGCTaGTCCACCTCCCAGCCGGGA +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPCCCCR*STSQPG
Trigger: TCCCGGCTGGGAGGTGGAGCAGCGGCAGCAGCAGCA...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR GCA 90 bp TACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTGGCGGCTGCTGCTGCTaGCGCTGCTCCACCTCCCAG +
Preference number: 4 (lower is better)
Translates to: YWLLALRSLVKLPLKVPSGGCCC*RCSTSQ
Trigger: CTGGGAGGTGGAGCAGCGGCAGCAGCAGCAGCCGCC...ACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR GCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAGGCGGCGGCTGCTGCTaGTGCCGCTGCTCCACCTCC +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRGGGCC*CRCSTS
Trigger: GGAGGTGGAGCAGCGGCAGCAGCAGCAGCCGCCGCC...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR GCA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATCGACTGCTCCGGGGCTaGCAAGGGCTGGCGCGCTGG +
Preference number: 4 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNRLLRG*QGLARW
Trigger: CCAGCGCGCCAGCCCTTGGCAGCCCCGGAGCAGTCG...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR GCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTGAAGGGAGCCTGCCGTaGAGGGTCGCGGACACTTTG +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDAEGSLP*RVADTL
Trigger: CAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTC...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR TCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTCCGGCTGCGCGGGGCTaGGAGGTGATCAATACAAGT +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDAPAARG*EVINTS
Trigger: ACTTGTATTGATCACCTCTCAGCCCCGCGCAGCCGG...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR GCA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATCTCGGGCGAGCCGGCTaGGCGGGGCTGAGAGGTGAT +
Preference number: 4 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNLGRAG*AGLRGD
Trigger: ATCACCTCTCAGCCCCGCGCAGCCGGCTCGCCCGAG...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR GCA 90 bp TACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTAGCTGGAAGGGAGCCTaGCGTGCAGGGTCGCGGACA +
Preference number: 4 (lower is better)
Translates to: YWLLALRSLVKLPLKVPSSWKGA*RAGSRT
Trigger: TGTCCGCGACCCTGCACGGCAGGCTCCCTTCCAGCT...ACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAGGAGGGGCCATGGGGTaGGCTGGGACCAGAGACTGC +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRGGAMG*AGTRDC
Trigger: GCAGTCTCTGGTCCCAGCCCACCCCATGGCCCCTCC...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAGACTGGGAGGGGCCATaGGGTGGGCTGGGACCAGAG +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRDWEGP*GGLGPE
Trigger: CTCTGGTCCCAGCCCACCCCATGGCCCCTCCCAGTC...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAGGAGGGGCCATGGGGTaGGCTGGGACCAGAGACTGT +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRGGAMG*AGTRDC
Trigger: ACAGTCTCTGGTCCCAGCCCACCCCATGGCCCCTCC...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000392753.7
CDS-3UTR GCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAATACAAGTGGAAAGTaGGGCAGCGGCGGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPNTSGK*GSGGCA
Trigger: AGCGCAGCCGCCGCTGCCGCACTTTCCACTTGTATT...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTGGTGATCAATACAAGTaGAAAGTGCGGCAGCGGCGG +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDAGDQYK*KVRQRR
Trigger: CCGCCGCTGCCGCACTTTCCACTTGTATTGATCACC...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAGGGTCGCGGACACTTTaGGGTTTCCAAGTCTCGGGC +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRGSRTL*GFQVSG
Trigger: GCCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCC...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAGGACCAGAGACTGCTTaGCTTGCAGATACTGGGGGT +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPGPETA*LADTGG
Trigger: ACCCCCAGTATCTGCAAGCCAAGCAGTCTCTGGTCC...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCATGTTATTACTGCTGGTaGTGCTGGGACTGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPCYYCW*CWDWEG
Trigger: CCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACA...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR TCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCACGCGGGGCTGAGAGGTaGTCAATACAAGTGGAAAGT +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPRGAER*SIQVES
Trigger: ACTTTCCACTTGTATTGATCACCTCTCAGCCCCGCG...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTGGGGGTAATAGTAGGTaGCGTACTGAGGGTACATCT +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDAGGNSR*RTEGTS
Trigger: AGATGTACCCTCAGTACGCCACCTACTATTACCCCC...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTTGTTGTTATTACTGCTaGTGGTGCTGGGACTGGGAG +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDACCYYC*WCWDWE
Trigger: CTCCCAGTCCCAGCACCACCAGCAGTAATAACAACA...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCATGTTGTTATTACTGCTaGTGGTGCTGGGACTGGGAG +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPCCYYC*WCWDWE
Trigger: CTCCCAGTCCCAGCACCACCAGCAGTAATAACAACA...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTACAATAAAGGTTCTGTaGGGGCAGAAACTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDATIKVL*GQKLLV
Trigger: CACCAGGAGTTTCTGCCCCCACAGAACCTTTATTGT...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTACAAGTTGGAGCTACTaGTTACTGGCTCTTCGGTCT +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDATSWSY*LLALRS
Trigger: AGACCGAAGAGCCAGTAACCAGTAGCTCCAACTTGT...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR TCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAATTTTCCCATATGGTTaGCAGAGCTTCACCAGGTCC +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPIFPYG*QSFTRS
Trigger: GGACCTGGTGAAGCTCTGTCAACCATATGGGAAAAT...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAGATGCTGAGACAAGTTaGAGCTACTGGTTACTGGCT +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPDAETS*SYWLLA
Trigger: AGCCAGTAACCAGTAGCTCCAACTTGTCTCAGCATC...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp TACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTTACTGTTGTTATTACTaGTGGTGGTGCTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: YWLLALRSLVKLPLKVPSYCCYY*WWCWDW
Trigger: CCAGTCCCAGCACCACCAGCAGTAATAACAACAGTA...ACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp TACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTGATGCTGAGACAAGTTaGAGCTACTGGTTACTGGCT +
Preference number: 4 (lower is better)
Translates to: YWLLALRSLVKLPLKVPSDAETS*SYWLLA
Trigger: AGCCAGTAACCAGTAGCTCCAACTTGTCTCAGCATC...ACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCACTCCTAACCGCAAACTaGTCCGGCAAAAATAAAGAG +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPLLTAN*SGKNKE
Trigger: CTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR TCA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTCACTTCACACTACGTTaGAAGAAAGACAGAAAGCTA +
Preference number: 4 (lower is better)
Translates to: LLTANWSGKNKEHRRCDAHFTLR*KKDRKL
Trigger: TAGCTTTCTGTCTTTCTTTCAACGTAGTGTGAAGTG...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAACAAGTTGGAGCTACTaGTTACTGGCTCTTCGGTCT +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRTSWSY*LLALRS
Trigger: AGACCGAAGAGCCAGTAACCAGTAGCTCCAACTTGT...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATTACTGTTGTTATTACTaGTGGTGGTGCTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNYCCYY*WWCWDW
Trigger: CCAGTCCCAGCACCACCAGCAGTAATAACAACAGTA...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAATCCTGAGTTGCTACTaGTGCTACTGTTGTTATTAC +
Preference number: 4 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPILSCY*CYCCYY
Trigger: GTAATAACAACAGTAGCAGCAGTAGCAACTCAGGAT...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp TACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTGACTATTTTCCCATATaGTTGACAGAGCTTCACCAG +
Preference number: 4 (lower is better)
Translates to: YWLLALRSLVKLPLKVPSDYFPI*LTELHQ
Trigger: CTGGTGAAGCTCTGTCAACCATATGGGAAAATAGTC...ACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAGACTATTTTCCCATATaGTTGACAGAGCTTCACCAG +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRDYFPI*LTELHQ
Trigger: CTGGTGAAGCTCTGTCAACCATATGGGAAAATAGTC...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAATCAGAGGAAACTGTTaGCGTACAGCCTTACAAACA +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRIRGNC*RTALQT
Trigger: TGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGAT...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CCA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATATCAGAGGAAACTGTTaGCGTACAGCCTTACAAACA +
Preference number: 4 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNIRGNC*RTALQT
Trigger: TGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGAT...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR TCA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATCACTTCACACTACGTTaGAAGAAAGACAGAAAGCTA +
Preference number: 4 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNHFTLR*KKDRKL
Trigger: TAGCTTTCTGTCTTTCTTTCAACGTAGTGTGAAGTG...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATATCCTGAGTTGCTACTaGTGCTACTGTTGTTATTAC +
Preference number: 4 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNILSCY*CYCCYY
Trigger: GTAATAACAACAGTAGCAGCAGTAGCAACTCAGGAT...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp TACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCAACATTTTTCGGTTTaGCAGATTTCAGGCATAATT +
Preference number: 4 (lower is better)
Translates to: YWLLALRSLVKLPLKVPSQHFSV*QISGII
Trigger: AATTATGCCTGAAATCTGGCAAACCGAAAAATGTTG...ACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAAGTAGCCAATCGTTTTaGTTCTATTCGTTATCTCAG +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRSSQSF*FYSLSQ
Trigger: CTGAGATAACGAATAGAAGCAAAACGATTGGCTACT...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGACTTACTTTTAGCTTTTaGCACTTTGTTGCAATAGCA +
Preference number: 4 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRLTFSF*HFVAIA
Trigger: TGCTATTGCAACAAAGTGGCAAAAGCTAAAAGTAAG...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR GCA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATCTTACTTTTAGCTTTTaGCACTTTGTTGCAATAGCA +
Preference number: 4 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNLTFSF*HFVAIA
Trigger: TGCTATTGCAACAAAGTGGCAAAAGCTAAAAGTAAG...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
3UTR CAA 72 bp TTTTGCCACTTTGTTGCAATAGCAACATTTTTCGGTTaGCCAGATTTCAGGCATAATTCTCATTCTAAAGCA +
Preference number: 4 (lower is better)
Translates to: FCHFVAIATFFG*PDFRHNSHSKA
Trigger: TGCTTTAGAATGAGAATTATGCCTGAAATCTGGCAAACCGAAAAATGTTGCTATTGCAACAAAGTGGCAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS GCA 90 bp TCCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCTGCTGCTGCTaGCGCTGCTCCACCTCCCAGCCGGGACCAGACGTCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: SGGGGSGGGGGGCCC*RCSTSQPGPDVLLL
Trigger: GAGGAGGAGGACGTCTGGTCCCGGCTGGGAGGTGGAGCAGCGGCAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGGA
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS GCA 90 bp CTTTCCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCTGCTGCTaGTGCCGCTGCTCCACCTCCCAGCCGGGACCAGACGTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: LSGGGGSGGGGGGCC*CRCSTSQPGPDVLL
Trigger: GAGGAGGACGTCTGGTCCCGGCTGGGAGGTGGAGCAGCGGCAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGGAAAG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS GCA 90 bp TCCCTTTCCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCTGCTaGTGCTGCCGCTGCTCCACCTCCCAGCCGGGACCAGACGTCCTC +
Preference number: 5 (lower is better)
Translates to: SLSGGGGSGGGGGGC*CCRCSTSQPGPDVL
Trigger: GAGGACGTCTGGTCCCGGCTGGGAGGTGGAGCAGCGGCAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGGAAAGGGA
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS CCA 90 bp AGGAGTTTCCTCCCGGAGCCCGACTGCTCCGGGGCTGCCAAGGGCTaGCGCGCTGGCCGCGGTCCGCTCGGGCGAGCCGGCTGCGCGGGG +
Preference number: 5 (lower is better)
Translates to: RSFLPEPDCSGAAKG*RAGRGPLGRAGCAG
Trigger: CCCCGCGCAGCCGGCTCGCCCGAGCGGACCGCGGCCAGCGCGCCAGCCCTTGGCAGCCCCGGAGCAGTCGGGCTCCGGGAGGAAACTCCT
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS GCA 90 bp GGCGCTCCCAAGGAGTTTCCTCCCGGAGCCCGACTGCTCCGGGGCTaGCAAGGGCTGGCGCGCTGGCCGCGGTCCGCTCGGGCGAGCCGG +
Preference number: 5 (lower is better)
Translates to: GAPKEFPPGARLLRG*QGLARWPRSARASR
Trigger: CCGGCTCGCCCGAGCGGACCGCGGCCAGCGCGCCAGCCCTTGGCAGCCCCGGAGCAGTCGGGCTCCGGGAGGAAACTCCTTGGGAGCGCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS GCA 90 bp ACCCCGGACAGGGCGCTCCCAAGGAGTTTCCTCCCGGAGCCCGACTaGTCCGGGGCTGCCAAGGGCTGGCGCGCTGGCCGCGGTCCGCTC +
Preference number: 5 (lower is better)
Translates to: TPDRALPRSFLPEPD*SGAAKGWRAGRGPL
Trigger: GAGCGGACCGCGGCCAGCGCGCCAGCCCTTGGCAGCCCCGGAGCAGTCGGGCTCCGGGAGGAAACTCCTTGGGAGCGCCCTGTCCGGGGT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS TCA 90 bp GGCGCGCTGGCCGCGGTCCGCTCGGGCGAGCCGGCTGCGCGGGGCTaGGAGGTGATCAATACAAGTGGAAAGTGCGGCAGCGGCGGCTGC +
Preference number: 5 (lower is better)
Translates to: GALAAVRSGEPAARG*EVINTSGKCGSGGC
Trigger: GCAGCCGCCGCTGCCGCACTTTCCACTTGTATTGATCACCTCTCAGCCCCGCGCAGCCGGCTCGCCCGAGCGGACCGCGGCCAGCGCGCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS GCA 90 bp GCCAAGGGCTGGCGCGCTGGCCGCGGTCCGCTCGGGCGAGCCGGCTaGGCGGGGCTGAGAGGTGATCAATACAAGTGGAAAGTGCGGCAG +
Preference number: 5 (lower is better)
Translates to: AKGWRAGRGPLGRAG*AGLRGDQYKWKVRQ
Trigger: CTGCCGCACTTTCCACTTGTATTGATCACCTCTCAGCCCCGCGCAGCCGGCTCGCCCGAGCGGACCGCGGCCAGCGCGCCAGCCCTTGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS TCA 90 bp TGGCCGCGGTCCGCTCGGGCGAGCCGGCTGCGCGGGGCTGAGAGGTaGTCAATACAAGTGGAAAGTGCGGCAGCGGCGGCTGCGCTTGGT +
Preference number: 5 (lower is better)
Translates to: WPRSARASRLRGAER*SIQVESAAAAAALG
Trigger: ACCAAGCGCAGCCGCCGCTGCCGCACTTTCCACTTGTATTGATCACCTCTCAGCCCCGCGCAGCCGGCTCGCCCGAGCGGACCGCGGCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS GCA 90 bp TGCTGTTTCCACACTTTGCCCATGAAGCTGGAAGGGAGCCTGCCGTaGAGGGTCGCGGACACTTTGGGGTTTCCAAGTCTCGGGCTCTCC +
Preference number: 5 (lower is better)
Translates to: CCFHTLPMKLEGSLP*RVADTLGFPSLGLS
Trigger: GGAGAGCCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000491781.5
CDS TCA 90 bp AGAAAGGCCCACTCCAACATGAGTGCAGGGCCCTCACTGGATATATaGTGGGAAGGCAAACAACTCCCTACAGACCCTAATTTGGGCCAG +
Preference number: 5 (lower is better)
Translates to: RKAHSNMSAGPSLDI*WEGKQLPTDPNLGQ
Trigger: CTGGCCCAAATTAGGGTCTGTAGGGAGTTGTTTGCCTTCCCATCATATATCCAGTGAGGGCCCTGCACTCATGTTGGAGTGGGCCTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS-3UTR CAA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTAGGGTCGCGGACACTTaGGGGTTTCCAAGTCTCGGG +
Preference number: 5 (lower is better)
Translates to: LLTANWSGKNKEHRRCDARVADT*GFPSLG
Trigger: CCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCCT...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS TCA 90 bp TGCATAAGCTTATGGTGGTTTAGTGGAGAAAGGCCCACTCCAACATaGGTGCAGGGCCCTCACTGGATATATGATGGGAAGGCAAACAAC +
Preference number: 5 (lower is better)
Translates to: CISLWWFSGERPTPT*VQGPHWIYDGKANN
Trigger: GTTGTTTGCCTTCCCATCATATATCCAGTGAGGGCCCTGCACTCATGTTGGAGTGGGCCTTTCTCCACTAAACCACCATAAGCTTATGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS-3UTR CAA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTCATCCACGAAGGACTTaGCACCTGGTAGGCAGATAC +
Preference number: 5 (lower is better)
Translates to: LLTANWSGKNKEHRRCDAHPRRT*HLVGRY
Trigger: GTATCTGCCTACCAGGTGCAAAGTCCTTCGTGGATG...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS TCA 90 bp TTTAGCCATCTTACCAGCAAAATGCTAAGCATCAAATCTGGAAGCTaGTCTGGTGCCAGCTCAACCTCATTACCCAAAGGAGTCCCCTGG +
Preference number: 5 (lower is better)
Translates to: FSHLTSKMLSIKSGS*SGASSTSLPKGVPW
Trigger: CCAGGGGACTCCTTTGGGTAATGAGGTTGAGCTGGCACCAGATCAGCTTCCAGATTTGATGCTTAGCATTTTGCTGGTAAGATGGCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS TCA 90 bp AAGGTTCCTATCTGGGTCCAGGAAGTAATCCTGTTAGAGGTTTTCTaGCACAGGAGGAGAAATGCATGTACACTACTGGGTTCATGGCGG +
Preference number: 5 (lower is better)
Translates to: KVPIWVQEVILLEVF*HRRRNACTLLGSWR
Trigger: CCGCCATGAACCCAGTAGTGTACATGCATTTCTCCTCCTGTGTCAGAAAACCTCTAACAGGATTACTTCCTGGACCCAGATAGGAACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490637.5
CDS CCA 90 bp CCATCTTACCAGCAAAATGCTAAGCATCAAATCTGGAAGCTGATCTaGTGCCAGCTCAACCTCATTACCCAAAGGAGTCCCCTGGACTTT +
Preference number: 5 (lower is better)
Translates to: PSYQQNAKHQIWKLI*CQLNLITQRSPLDF
Trigger: AAAGTCCAGGGGACTCCTTTGGGTAATGAGGTTGAGCTGGCACCAGATCAGCTTCCAGATTTGATGCTTAGCATTTTGCTGGTAAGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS-3UTR CAA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATGGGACCAGAGACTGCTaGGCTTGCAGATACTGGGGG +
Preference number: 5 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNGTRDC*ACRYWG
Trigger: CCCCCAGTATCTGCAAGCCAAGCAGTCTCTGGTCCC...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CAA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTCTACTGCTGCTACTGTaGTTATTACTGCTGGTGGTG +
Preference number: 5 (lower is better)
Translates to: LLTANWSGKNKEHRRCDALLLLL*LLLLVV
Trigger: CACCACCAGCAGTAATAACAACAGTAGCAGCAGTAG...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CAA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTCTTGTTCCTGTTGCTTaGCCATTTGAGCTTGAACCC +
Preference number: 5 (lower is better)
Translates to: LLTANWSGKNKEHRRCDALVPVA*PFELEP
Trigger: GGGTTCAAGCTCAAATGGCAAAGCAACAGGAACAAG...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS GCA 90 bp TTGGGGTTGGTGGTTTCTTGCAGCTGCCAATTTCTCAAATCCAATTaGATAAGCTTATGGTGGTTTAGTGGAGAAAGGCCCACTCCAACA +
Preference number: 5 (lower is better)
Translates to: LGLVVSCSCQFLKSN*ISLWWFSGERPTPT
Trigger: TGTTGGAGTGGGCCTTTCTCCACTAAACCACCATAAGCTTATGCAATTGGATTTGAGAAATTGGCAGCTGCAAGAAACCACCAACCCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS GCA 90 bp CTGGACTGTAGCCTTTCCCCATTGGGGTTGGTGGTTTCTTGCAGCTaGCAATTTCTCAAATCCAATTGCATAAGCTTATGGTGGTTTAGT +
Preference number: 5 (lower is better)
Translates to: LDCSLSPLGLVVSCS*QFLKSNCISLWWFS
Trigger: ACTAAACCACCATAAGCTTATGCAATTGGATTTGAGAAATTGGCAGCTGCAAGAAACCACCAACCCCAATGGGGAAAGGCTACAGTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS GCA 90 bp AGTTATCTGGACTGTAGCCTTTCCCCATTGGGGTTGGTGGTTTCTTaGAGCTGCCAATTTCTCAAATCCAATTGCATAAGCTTATGGTGG +
Preference number: 5 (lower is better)
Translates to: SYLDCSLSPLGLVVS*SCQFLKSNCISLWW
Trigger: CCACCATAAGCTTATGCAATTGGATTTGAGAAATTGGCAGCTGCAAGAAACCACCAACCCCAATGGGGAAAGGCTACAGTCCAGATAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS GCA 90 bp TACCTTGATAGCAGAGCCCCGATACTTGTTTTCTCTGGTTTCCTTTaGCACCTAAGGCAGACCAAAGTTAAGTGCTTCTGCCTTGTTAAC +
Preference number: 5 (lower is better)
Translates to: YLDSRAPILVFSGFL*HLRQTKVKCFCLVN
Trigger: GTTAACAAGGCAGAAGCACTTAACTTTGGTCTGCCTTAGGTGGCAAAGGAAACCAGAGAAAACAAGTATCGGGGCTCTGCTATCAAGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS CCA 90 bp CAGACCAAAGTTAAGTGCTTCTGCCTTGTTAACATTTCAGTTATCTaGACTGTAGCCTTTCCCCATTGGGGTTGGTGGTTTCTTGCAGCT +
Preference number: 5 (lower is better)
Translates to: QTKVKCFCLVNISVI*TVAFPHWGWWFLAA
Trigger: AGCTGCAAGAAACCACCAACCCCAATGGGGAAAGGCTACAGTCCAGATAACTGAAATGTTAACAAGGCAGAAGCACTTAACTTTGGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS-3UTR CAA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGATGCTGTTTCCACACTTaGCCCATGAAGCTGGAAGGG +
Preference number: 5 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRCCFHT*PMKLEG
Trigger: CCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAGCA...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CAA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTTATTTTCCCATATGGTaGACAGAGCTTCACCAGGTC +
Preference number: 5 (lower is better)
Translates to: LLTANWSGKNKEHRRCDAYFPIW*TELHQV
Trigger: GACCTGGTGAAGCTCTGTCAACCATATGGGAAAATA...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CAA 90 bp CTCCTAACCGCAAACTGGTCCGGCAAAAATAAAGAGCACAGAAGATGTGATGCTAGGATCTTGTTCCTGTaGCTTTGCCATTTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: LLTANWSGKNKEHRRCDARILFL*LCHLSL
Trigger: CAAGCTCAAATGGCAAAGCAACAGGAACAAGATCCT...AGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CAA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGACATCCACGAAGGACTTaGCACCTGGTAGGCAGATAC +
Preference number: 5 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRHPRRT*HLVGRY
Trigger: GTATCTGCCTACCAGGTGCAAAGTCCTTCGTGGATG...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CAA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGACAGAGACTGCTTGGCTaGCAGATACTGGGGGTAATA +
Preference number: 5 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRQRLLG*QILGVI
Trigger: TATTACCCCCAGTATCTGCAAGCCAAGCAGTCTCTG...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS-3UTR CAA 90 bp AGCTACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCATATTTTCCCATATGGTaGACAGAGCTTCACCAGGTC +
Preference number: 5 (lower is better)
Translates to: SYWLLALRSLVKLPLKVPYFPIW*TELHQV
Trigger: GACCTGGTGAAGCTCTGTCAACCATATGGGAAAATA...TGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CAA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGACTTGTTCCTGTTGCTTaGCCATTTGAGCTTGAACCC +
Preference number: 5 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRLVPVA*PFELEP
Trigger: GGGTTCAAGCTCAAATGGCAAAGCAACAGGAACAAG...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS TCA 90 bp ATTCCCTGCTTTTACCATCTTGTATTACCTTCGTCTTTCGCTTCATaGCACTGCCACAGGGACAGTGGTACTAGTTATATAGATGACACT +
Preference number: 5 (lower is better)
Translates to: IPCFYHLVLPSSFAS*HCHRDSGTSYIDDT
Trigger: AGTGTCATCTATATAACTAGTACCACTGTCCCTGTGGCAGTGTCATGAAGCGAAAGACGAAGGTAATACAAGATGGTAAAAGCAGGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS GCA 90 bp AAGGCGAAACAGACTGGGCCCCACCCTCAAGAAATTTACTATCTATaGAAGGGAGATAAACACAGCAACAACTCAAATAGTGAAAAGTGT +
Preference number: 5 (lower is better)
Translates to: KAKQTGPHPQEIYYL*KGDKHSNNSNSEKC
Trigger: ACACTTTTCACTATTTGAGTTGTTGCTGTGTTTATCTCCCTTGCATAGATAGTAAATTTCTTGAGGGTGGGGCCCAGTCTGTTTCGCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS-3UTR CAA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGATATCAGAGGAAACTGTaGGCGTACAGCCTTACAAAC +
Preference number: 5 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRYQRKL*AYSLTN
Trigger: GTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATA...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CAA 90 bp TACTGGTTACTGGCTCTTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCTGGCTCTTCGGTCTTaGGTGAAGTTACCTTTAAAA +
Preference number: 5 (lower is better)
Translates to: YWLLALRSLVKLPLKVPSLALRS*VKLPLK
Trigger: TTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAG...ACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS GCA 90 bp ATAGATGACACTAGTCATAAAAGGCTAGATGTGGTCACGTGTGGGTaGTATATTCTCGTAAAGGAGAGATACCCAGAGAATAGACTTTCA +
Preference number: 5 (lower is better)
Translates to: IDDTSHKRLDVVTCG*YILVKERYPENRLS
Trigger: TGAAAGTCTATTCTCTGGGTATCTCTCCTTTACGAGAATATAGCACCCACACGTGACCACATCTAGCCTTTTATGACTAGTGTCATCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS CCA 90 bp GAGGTCAGAATGGGCAATGGTAAACCATGCAAAATTTGGAGTACGTaGGGGGATTGTGAGATGGATATAATGTATTTGGAAATCTCAAAG +
Preference number: 5 (lower is better)
Translates to: EVRMGNGKPCKIWST*GDCEMDIMYLEISK
Trigger: CTTTGAGATTTCCAAATACATTATATCCATCTCACAATCCCCCCACGTACTCCAAATTTTGCATGGTTTACCATTGCCCATTCTGACCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS-3UTR CAA 90 bp TGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAAAAGTTCCCCAGTCAGAGCAACATTTTTCGGTTaGCCAGATTTCAGGCATAAT +
Preference number: 5 (lower is better)
Translates to: CWRTALQTIYPNKSSPVRATFFG*PDFRHN
Trigger: ATTATGCCTGAAATCTGGCAAACCGAAAAATGTTGC...TCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS-3UTR CAA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATCTGGCTCTTCGGTCTTaGGTGAAGTTACCTTTAAAA +
Preference number: 5 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNLALRS*VKLPLK
Trigger: TTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAG...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS TCA 90 bp AGTGTTTGGGTTCATTCCAATCCAAAATGCTATGATTCCAAGGACTaGCCACTGACAAACATTTTCCTTTGCTTTACATTCTCCTATACA +
Preference number: 5 (lower is better)
Translates to: SVWVHSNPKCYDSKD*PLTNIFLCFTFSYT
Trigger: TGTATAGGAGAATGTAAAGCAAAGGAAAATGTTTGTCAGTGGTCAGTCCTTGGAATCATAGCATTTTGGATTGGAATGAACCCAAACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490637.5
ENST00000491781.5
CDS-3UTR CAA 90 bp CAAACTATCAGAGGAAACTGTTGGCGTACAGCCTTACAAACAATTTACCCTAATAACATTTTTCCCTTCTaGCATTTCACTACCTTACAC +
Preference number: 5 (lower is better)
Translates to: QTIRGNCWRTALQTIYPNNIFPF*HFTTLH
Trigger: GTGTAAGGTAGTGAAATGCAAGAAGGGAAAAATGTT...ATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000392753.7
CDS TCA 90 bp CCTTTCATTTGCCTGAGAATAACTTACACTTGCCCCTATTTTCAGTaGCATATAAATGACAGAGGTTTCCAAGTTCAGACAGTTAAGAAA +
Preference number: 5 (lower is better)
Translates to: PFICLRITYTCPYFQ*HINDRGFQVQTVKK
Trigger: TTTCTTAACTGTCTGAACTTGGAAACCTCTGTCATTTATATGTCACTGAAAATAGGGGCAAGTGTAAGTTATTCTCAGGCAAATGAAAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490637.5
CDS CCA 90 bp GTTTCTGTACAGGTTCAATCAGAGCACATCAACAACTTCATATCCTaGGATTTTGCTCTTAACTTTGCATTCTATTCTAACCATTTACCT +
Preference number: 5 (lower is better)
Translates to: VSVQVQSEHINNFIS*DFALNFAFYSNHLP
Trigger: AGGTAAATGGTTAGAATAGAATGCAAAGTTAAGAGCAAAATCCCAGGATATGAAGTTGTTGATGTGCTCTGATTGAACCTGTACAGAAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS GCA 72 bp AGGGCGCTCCCAAGGAGTTTCCTCCCGGAGCCCGACTaGTCCGGGGCTGCCAAGGGCTGGCGCGCTGGCCGC +
Preference number: 6 (lower is better)
Translates to: RALPRSFLPEPD*SGAAKGWRAGR
Trigger: GCGGCCAGCGCGCCAGCCCTTGGCAGCCCCGGAGCAGTCGGGCTCCGGGAGGAAACTCCTTGGGAGCGCCCT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS GCA 72 bp TGGCGCGCTGGCCGCGGTCCGCTCGGGCGAGCCGGCTaGGCGGGGCTGAGAGGTGATCAATACAAGTGGAAA +
Preference number: 6 (lower is better)
Translates to: WRAGRGPLGRAG*AGLRGDQYKWK
Trigger: TTTCCACTTGTATTGATCACCTCTCAGCCCCGCGCAGCCGGCTCGCCCGAGCGGACCGCGGCCAGCGCGCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS TCA 72 bp TCCGCTCGGGCGAGCCGGCTGCGCGGGGCTGAGAGGTaGTCAATACAAGTGGAAAGTGCGGCAGCGGCGGCT +
Preference number: 6 (lower is better)
Translates to: SARASRLRGAER*SIQVESAAAAA
Trigger: AGCCGCCGCTGCCGCACTTTCCACTTGTATTGATCACCTCTCAGCCCCGCGCAGCCGGCTCGCCCGAGCGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS CCA 72 bp GCCGGCTGCGCGGGGCTGAGAGGTGATCAATACAAGTaGAAAGTGCGGCAGCGGCGGCTGCGCTTGGTGCCA +
Preference number: 6 (lower is better)
Translates to: AGCAGLRGDQYK*KVRQRRLRLVP
Trigger: TGGCACCAAGCGCAGCCGCCGCTGCCGCACTTTCCACTTGTATTGATCACCTCTCAGCCCCGCGCAGCCGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348849.8
CDS CCA 72 bp TGGAAGGGAGCCTGCCGTGCAGGGTCGCGGACACTTTaGGGTTTCCAAGTCTCGGGCTCTCCTGCCTCTCCC +
Preference number: 6 (lower is better)
Translates to: WKGACRAGSRTL*GFQVSGSPASP
Trigger: GGGAGAGGCAGGAGAGCCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000491781.5
CDS CAA 72 bp CTGGAAGGGAGCCTGCCGTGCAGGGTCGCGGACACTTaGGGGTTTCCAAGTCTCGGGCTCTCCTGCCTCTCC +
Preference number: 6 (lower is better)
Translates to: LEGSLPCRVADT*GFPSLGLSCLS
Trigger: GGAGAGGCAGGAGAGCCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTCCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000491781.5
CDS CAA 90 bp CCCATGAAGCTGGAAGGGAGCCTGCCGTGCAGGGTCGCGGACACTTaGGGGTTTCCAAGTCTCGGGCTCTCCTGCCTCTCCCTTTCCGGC +
Preference number: 6 (lower is better)
Translates to: PMKLEGSLPCRVADT*GFPSLGLSCLSLSG
Trigger: GCCGGAAAGGGAGAGGCAGGAGAGCCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTCCAGCTTCATGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000491781.5
CDS GCA 72 bp CACACTTTGCCCATGAAGCTGGAAGGGAGCCTGCCGTaGAGGGTCGCGGACACTTTGGGGTTTCCAAGTCTC +
Preference number: 6 (lower is better)
Translates to: HTLPMKLEGSLP*RVADTLGFPSL
Trigger: GAGACTTGGAAACCCCAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTCCAGCTTCATGGGCAAAGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000491781.5
CDS CAA 72 bp GGCCATGGGGTGGGCTGGGACCAGAGACTGCTTGGCTaGCAGATACTGGGGGTAATAGTAGGTGGCGTACTG +
Preference number: 6 (lower is better)
Translates to: GHGVGWDQRLLG*QILGVIVGGVL
Trigger: CAGTACGCCACCTACTATTACCCCCAGTATCTGCAAGCCAAGCAGTCTCTGGTCCCAGCCCACCCCATGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000491781.5
CDS GCA 72 bp GGTGGTTTAGTGGAGAAAGGCCCACTCCAACATGAGTaGAGGGCCCTCACTGGATATATGATGGGAAGGCAA +
Preference number: 6 (lower is better)
Translates to: GGLVEKGPLQHE*RALTGYMMGRQ
Trigger: TTGCCTTCCCATCATATATCCAGTGAGGGCCCTGCACTCATGTTGGAGTGGGCCTTTCTCCACTAAACCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS TCA 72 bp TTATGGTGGTTTAGTGGAGAAAGGCCCACTCCAACATaGGTGCAGGGCCCTCACTGGATATATGATGGGAAG +
Preference number: 6 (lower is better)
Translates to: LWWFSGERPTPT*VQGPHWIYDGK
Trigger: CTTCCCATCATATATCCAGTGAGGGCCCTGCACTCATGTTGGAGTGGGCCTTTCTCCACTAAACCACCATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS CCA 72 bp ACTGCTTGGCTTGCAGATACTGGGGGTAATAGTAGGTaGCGTACTGAGGGTACATCTGCTGTTTCCACACTT +
Preference number: 6 (lower is better)
Translates to: TAWLADTGGNSR*RTEGTSAVSTL
Trigger: AAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTATTACCCCCAGTATCTGCAAGCCAAGCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000348849.8
ENST00000491781.5
CDS CCA 72 bp CAAACTTGGCTTGCAGATACTGGGGGTAATAGTAGGTaGCGTACTGAGGGTACATCTGCTGTTTCCACACTT +
Preference number: 6 (lower is better)
Translates to: QTWLADTGGNSR*RTEGTSAVSTL
Trigger: AAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTATTACCCCCAGTATCTGCAAGCCAAGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000474820.5
CDS CCA 72 bp CAGCAAAATGCTAAGCATCAAATCTGGAAGCTGATCTaGTGCCAGCTCAACCTCATTACCCAAAGGAGTCCC +
Preference number: 6 (lower is better)
Translates to: QQNAKHQIWKLI*CQLNLITQRSP
Trigger: GGGACTCCTTTGGGTAATGAGGTTGAGCTGGCACCAGATCAGCTTCCAGATTTGATGCTTAGCATTTTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS CCA 72 bp TCAGTTATCTGGACTGTAGCCTTTCCCCATTGGGGTTaGTGGTTTCTTGCAGCTGCCAATTTCTCAAATCCA +
Preference number: 6 (lower is better)
Translates to: SVIWTVAFPHWG*WFLAAANFSNP
Trigger: TGGATTTGAGAAATTGGCAGCTGCAAGAAACCACCAACCCCAATGGGGAAAGGCTACAGTCCAGATAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS CAA 72 bp TTCAGTTATCTGGACTGTAGCCTTTCCCCATTGGGGTaGGTGGTTTCTTGCAGCTGCCAATTTCTCAAATCC +
Preference number: 6 (lower is better)
Translates to: FSYLDCSLSPLG*VVSCSCQFLKS
Trigger: GGATTTGAGAAATTGGCAGCTGCAAGAAACCACCAACCCCAATGGGGAAAGGCTACAGTCCAGATAACTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS TCA 72 bp CTTACCAGCAAAATGCTAAGCATCAAATCTGGAAGCTaGTCTGGTGCCAGCTCAACCTCATTACCCAAAGGA +
Preference number: 6 (lower is better)
Translates to: LTSKMLSIKSGS*SGASSTSLPKG
Trigger: TCCTTTGGGTAATGAGGTTGAGCTGGCACCAGATCAGCTTCCAGATTTGATGCTTAGCATTTTGCTGGTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS TCA 72 bp ATCTGGGTCCAGGAAGTAATCCTGTTAGAGGTTTTCTaGCACAGGAGGAGAAATGCATGTACACTACTGGGT +
Preference number: 6 (lower is better)
Translates to: IWVQEVILLEVF*HRRRNACTLLG
Trigger: ACCCAGTAGTGTACATGCATTTCTCCTCCTGTGTCAGAAAACCTCTAACAGGATTACTTCCTGGACCCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490637.5
CDS GCA 72 bp TCACACAGGATCCTGATGGTCAACAAAAGGGAACTCTaGTCCCACATGTCTGCAACTGAACTCCATTATAAG +
Preference number: 6 (lower is better)
Translates to: SHRILMVNKREL*SHMSATELHYK
Trigger: CTTATAATGGAGTTCAGTTGCAGACATGTGGGAGCAGAGTTCCCTTTTGTTGACCATCAGGATCCTGTGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490637.5
CDS CCA 72 bp AACATTTCAGTTATCTGGACTGTAGCCTTTCCCCATTaGGGTTGGTGGTTTCTTGCAGCTGCCAATTTCTCA +
Preference number: 6 (lower is better)
Translates to: NISVIWTVAFPH*GWWFLAAANFS
Trigger: TGAGAAATTGGCAGCTGCAAGAAACCACCAACCCCAATGGGGAAAGGCTACAGTCCAGATAACTGAAATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS GCA 72 bp GTGGTTTCTTGCAGCTGCCAATTTCTCAAATCCAATTaGATAAGCTTATGGTGGTTTAGTGGAGAAAGGCCC +
Preference number: 6 (lower is better)
Translates to: VVSCSCQFLKSN*ISLWWFSGERP
Trigger: GGGCCTTTCTCCACTAAACCACCATAAGCTTATGCAATTGGATTTGAGAAATTGGCAGCTGCAAGAAACCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS CCA 72 bp CACAGGAGGAGAAATGCATGTACACTACTGGGTTCATaGCGGACAGGAGCTACCTTTGCATTAAAATCAAAT +
Preference number: 6 (lower is better)
Translates to: HRRRNACTLLGS*RTGATFALKSN
Trigger: ATTTGATTTTAATGCAAAGGTAGCTCCTGTCCGCCATGAACCCAGTAGTGTACATGCATTTCTCCTCCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490637.5
CDS CCA 72 bp CCTATTGTTAACTTCAGAGGTTCAACAGAGAGGATATaGGGAAGAGTCATGGGGGAAGAATGTATTGCGATT +
Preference number: 6 (lower is better)
Translates to: PIVNFRGSTERI*GRVMGEECIAI
Trigger: AATCGCAATACATTCTTCCCCCATGACTCTTCCCCATATCCTCTCTGTTGAACCTCTGAAGTTAACAATAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS CAA 90 bp GAAGAGAGGGGATTAGACATAATCTGTTATCATAGAGGCTGTCATTaGATAGGGAAGATACAGGCTGCATTAATTTACCCTCCTCTGTTT +
Preference number: 6 (lower is better)
Translates to: EERGLDIICYHRGCH*IGKIQAALIYPPLF
Trigger: AAACAGAGGAGGGTAAATTAATGCAGCCTGTATCTTCCCTATCAAATGACAGCCTCTATGATAACAGATTATGTCTAATCCCCTCTCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS TCA 72 bp TTTTACCATCTTGTATTACCTTCGTCTTTCGCTTCATaGCACTGCCACAGGGACAGTGGTACTAGTTATATA +
Preference number: 6 (lower is better)
Translates to: FYHLVLPSSFAS*HCHRDSGTSYI
Trigger: TATATAACTAGTACCACTGTCCCTGTGGCAGTGTCATGAAGCGAAAGACGAAGGTAATACAAGATGGTAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS TCA 72 bp ATCAAGAATACACAAAAATTTAGTCACACAGGATCCTaGTGGTCAACAAAAGGGAACTCTGCTCCCACATGT +
Preference number: 6 (lower is better)
Translates to: IKNTQKFSHTGS*WSTKGNSAPTC
Trigger: ACATGTGGGAGCAGAGTTCCCTTTTGTTGACCATCAGGATCCTGTGTGACTAAATTTTTGTGTATTCTTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000490637.5
CDS CCA 72 bp ATGGGCAATGGTAAACCATGCAAAATTTGGAGTACGTaGGGGGATTGTGAGATGGATATAATGTATTTGGAA +
Preference number: 6 (lower is better)
Translates to: MGNGKPCKIWST*GDCEMDIMYLE
Trigger: TTCCAAATACATTATATCCATCTCACAATCCCCCCACGTACTCCAAATTTTGCATGGTTTACCATTGCCCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS CAA 72 bp TCTGCCACTCAAGAGAAAAACATATCAGCCCATTTCTaGATGCCCAGAGCTTTCCAGAGTCTAAGTAATTTT +
Preference number: 6 (lower is better)
Translates to: SATQEKNISAHF*MPRAFQSLSNF
Trigger: AAAATTACTTAGACTCTGGAAAGCTCTGGGCATCAAGAAATGGGCTGATATGTTTTTCTCTTGAGTGGCAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS CAA 72 bp ATTCACTCAGTGTTTCTCAGAACTTTAAGTTACATTTaGGTGCCTGGGAGGGAAGGCAATTCAGATATGATT +
Preference number: 6 (lower is better)
Translates to: IHSVFLRTLSYI*VPGREGNSDMI
Trigger: AATCATATCTGAATTGCCTTCCCTCCCAGGCACCAAAATGTAACTTAAAGTTCTGAGAAACACTGAGTGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS CAA 72 bp TGTTCTATCCAGATAATCGTCTGGTTCAAGATCAGGTaGTTAGGATCAAGAGCACATTTCTTCATTCACTCA +
Preference number: 6 (lower is better)
Translates to: CSIQIIVWFKIR*LGSRAHFFIHS
Trigger: TGAGTGAATGAAGAAATGTGCTCTTGATCCTAACAACCTGATCTTGAACCAGACGATTATCTGGATAGAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS TCA 72 bp GTTCATTCCAATCCAAAATGCTATGATTCCAAGGACTaGCCACTGACAAACATTTTCCTTTGCTTTACATTC +
Preference number: 6 (lower is better)
Translates to: VHSNPKCYDSKD*PLTNIFLCFTF
Trigger: GAATGTAAAGCAAAGGAAAATGTTTGTCAGTGGTCAGTCCTTGGAATCATAGCATTTTGGATTGGAATGAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490637.5
ENST00000491781.5
CDS CCA 72 bp CAGGTTCAATCAGAGCACATCAACAACTTCATATCCTaGGATTTTGCTCTTAACTTTGCATTCTATTCTAAC +
Preference number: 6 (lower is better)
Translates to: QVQSEHINNFIS*DFALNFAFYSN
Trigger: GTTAGAATAGAATGCAAAGTTAAGAGCAAAATCCCAGGATATGAAGTTGTTGATGTGCTCTGATTGAACCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS CAA 72 bp GGATTAGACATAATCTGTTATCATAGAGGCTGTCATTaGATAGGGAAGATACAGGCTGCATTAATTTACCCT +
Preference number: 6 (lower is better)
Translates to: GLDIICYHRGCH*IGKIQAALIYP
Trigger: AGGGTAAATTAATGCAGCCTGTATCTTCCCTATCAAATGACAGCCTCTATGATAACAGATTATGTCTAATCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS CAA 90 bp TACAGGTTCAATCAGAGCACATCAACAACTTCATATCCTGGGATTTaGCTCTTAACTTTGCATTCTATTCTAACCATTTACCTAGCTTGT +
Preference number: 6 (lower is better)
Translates to: YRFNQSTSTTSYPGI*LLTLHSILTIYLAC
Trigger: ACAAGCTAGGTAAATGGTTAGAATAGAATGCAAAGTTAAGAGCAAAATCCCAGGATATGAAGTTGTTGATGTGCTCTGATTGAACCTGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS CAA 90 bp CATTTCTTCATTCACTCAGTGTTTCTCAGAACTTTAAGTTACATTTaGGTGCCTGGGAGGGAAGGCAATTCAGATATGATTAATAATCTG +
Preference number: 6 (lower is better)
Translates to: HFFIHSVFLRTLSYI*VPGREGNSDMINNL
Trigger: CAGATTATTAATCATATCTGAATTGCCTTCCCTCCCAGGCACCAAAATGTAACTTAAAGTTCTGAGAAACACTGAGTGAATGAAGAAATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS TCA 72 bp AAACAATTTCTATTTGCCCACTCAAGAAGTAATTGTTaGGTATCAGGCAACAAAGAGAAAAAGGCGAAACAG +
Preference number: 6 (lower is better)
Translates to: KQFLFAHSRSNC*VSGNKEKKAKQ
Trigger: CTGTTTCGCCTTTTTCTCTTTGTTGCCTGATACTCAACAATTACTTCTTGAGTGGGCAAATAGAAATTGTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000477965.1
ENST00000490637.5
CDS TCA 72 bp TCTTTATTTTTGGACTTTTGCAATCACCTCATTATCTaGGAATGCAAGTATTCTGACACGCTCTGTAACTAC +
Preference number: 6 (lower is better)
Translates to: SLFLDFCNHLII*ECKYSDTLCNY
Trigger: GTAGTTACAGAGCGTGTCAGAATACTTGCATTCTCAGATAATGAGGTGATTGCAAAAGTCCAAAAATAAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000474147.5
CDS CAA 72 bp AATCAGAGCACATCAACAACTTCATATCCTGGGATTTaGCTCTTAACTTTGCATTCTATTCTAACCATTTAC +
Preference number: 6 (lower is better)
Translates to: NQSTSTTSYPGI*LLTLHSILTIY
Trigger: GTAAATGGTTAGAATAGAATGCAAAGTTAAGAGCAAAATCCCAGGATATGAAGTTGTTGATGTGCTCTGATT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474147.5