Pregenerated sensors for RBM11 (Homo sapiens)
Ensembl gene IDs: ENSG00000185272Ensembl transcript IDs: ENST00000400577.4, ENST00000461088.1, ENST00000468643.5, ENST00000468788.5, ENST00000475864.1, ENST00000495055.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAACATGCAAAAGAAACATCCAAGCATGGCTTTTACTATTGAATTaGGTGGTTAATTCCCAACTGAGTTGCATGACTCTTTCAATTAGC | + |
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Preference number: 1 (lower is better) Translates to: ATCKRNIQAWLLLLN*VVNSQLSCMTLSIS Trigger: GCTAATTGAAAGAGTCATGCAACTCAGTTGGGAATTAACCACTCAATTCAATAGTAAAAGCCATGCTTGGATGTTTCTTTTGCATGTTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| 3UTR-3UTR TCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCAGCCTATTTGTAGTTaGGTGTTGGTTATAGGGGAT | + |
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Preference number: 2 (lower is better) Translates to: EEEYGSETTYLGTKRKGYQPICS*VLVIGD Trigger: ATCCCCTATAACCAACACTCAACTACAAATAGGCTG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| 3UTR TCA 72 bp | CCACCACTCCACATTGAATCCCAGCCTATTTGTAGTTaGGTGTTGGTTATAGGGGATAATCAAAGGGAACAT | + |
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Preference number: 3 (lower is better) Translates to: PPLHIESQPICS*VLVIGDNQREH Trigger: ATGTTCCCTTTGATTATCCCCTATAACCAACACTCAACTACAAATAGGCTGGGATTCAATGTGGAGTGGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| 3UTR-3UTR CAA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACATCCACCACTCCACATaGAATCCCAGCCTATTTGTA | + |
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Preference number: 3 (lower is better) Translates to: EEEYGSETTYLGTKRKGYIHHST*NPSLFV Trigger: TACAAATAGGCTGGGATTCAATGTGGAGTGGTGGAT...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR TCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCTGTCGGCCTCCTCCTaGGCAGGGAACATCCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYLSASS*AGNILR Trigger: CCGGAGGATGTTCCCTGCTCAGGAGGAGGCCGACAG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR TCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACGTTAGTGGCCCCGCCTaGAGGAACAGCTCGTACAGA | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYVSGPA*RNSSYR Trigger: TCTGTACGAGCTGTTCCTTCAGGCGGGGCCACTAAC...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| 3UTR CAA 72 bp | TGCACTACTTTCTTTCAGGAAATCCACCACTCCACATaGAATCCCAGCCTATTTGTAGTTGAGTGTTGGTTA | + |
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Preference number: 4 (lower is better) Translates to: CTTFFQEIHHST*NPSLFVVECWL Trigger: TAACCAACACTCAACTACAAATAGGCTGGGATTCAATGTGGAGTGGTGGATTTCCTGAAAGAAAGTAGTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACAGGAAGCTGCAGCACTaGATTATACACATGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYRKLQH*IIHMPL Trigger: CAGTGGCATGTGTATAATCCAGTGCTGCAGCTTCCT...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR GCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACTTTGGCTACATTCGTTaGCTCTGTTGTTGTCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYFGYIR*LCCCLC Trigger: GCACAGACAACAACAGAGGCAACGAATGTAGCCAAA...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACGACTTTCGGAACTTTTaGCTACATTCGTTGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYDFRNF*LHSLPL Trigger: CAGAGGCAACGAATGTAGCCAAAAGTTCCGAAAGTC...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR GCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCTCCCAAATCGATACTaGACGTTAATTGGTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYLPNRY*TLIGLP Trigger: TGGAAGACCAATTAACGTGCAGTATCGATTTGGGAG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR GCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACTGGGAAAGGAAGATCTaGCCACCAACATTTCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYWERKI*PPTFLH Trigger: ATGAAGAAATGTTGGTGGGCAGATCTTCCTTTCCCA...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCATTCAGCAAAGCTATaGCATAAGACACCGATTCTG | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYHSAKL*HKTPIL Trigger: CAGAATCGGTGTCTTATGCCATAGCTTTGCTGAATG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCAGCTCTCAAAACTTTaGTTAGCTGGTTCAGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYQLSKL*LAGSEE Trigger: CTCTTCTGAACCAGCTAACCAAAGTTTTGAGAGCTG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACTTGGAAAATACTGCATaGGAAAGGAAGATCTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYLENTA*ERKICP Trigger: TGGGCAGATCTTCCTTTCCCATGCAGTATTTTCCAA...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR GCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCTCTGTTGTTGTCTGTaGTACTATCACTATCACTTG | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYLCCCL*YYHYHL Trigger: CAAGTGATAGTGATAGTAGCACAGACAACAACAGAG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR TCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCATACAATTAATATGTaGGAAGAGGAAGGTATCCCT | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYHTINM*EEEGIP Trigger: AGGGATACCTTCCTCTTCTCACATATTAATTGTATG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR TCA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCATGGCTTTTACTATTaGATTGAGTGGTTAATTCCC | + |
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Preference number: 4 (lower is better) Translates to: EEEYGSETTYLGTKRKGYHGFYY*IEWLIP Trigger: GGGAATTAACCACTCAATTCAATAGTAAAAGCCATG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CAA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACTCGTTGCCTCTGTTGTaGTCTGTGCTACTATCACTA | + |
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Preference number: 5 (lower is better) Translates to: EEEYGSETTYLGTKRKGYSLPLL*SVLLSL Trigger: TAGTGATAGTAGCACAGACAACAACAGAGGCAACGA...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CAA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCATTCGTTGCCTCTGTaGTTGTCTGTGCTACTATCA | + |
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Preference number: 5 (lower is better) Translates to: EEEYGSETTYLGTKRKGYHSLPL*LSVLLS Trigger: TGATAGTAGCACAGACAACAACAGAGGCAACGAATG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CAA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACAGACTTTCGGAACTTTaGGCTACATTCGTTGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: EEEYGSETTYLGTKRKGYRLSEL*ATFVAS Trigger: AGAGGCAACGAATGTAGCCAAAAGTTCCGAAAGTCT...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CAA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACACAGCTCTCAAAACTTaGGTTAGCTGGTTCAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: EEEYGSETTYLGTKRKGYTALKT*VSWFRR Trigger: TCTTCTGAACCAGCTAACCAAAGTTTTGAGAGCTGT...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CAA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACCAAATCCAAAAGACTTaGGCTTTCCTTCTCTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: EEEYGSETTYLGTKRKGYQIQKT*AFLLCL Trigger: AAGACAGAGAAGGAAAGCCAAAGTCTTTTGGATTTG...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS-3UTR CAA 90 bp | GAAGAAGAATATGGCTCAGAAACAACATATTTAGGTACTAAAAGAAAGGGGTACATAGCATCTCAAACCTaGCTAGCAAAAGAGGTGAAT | + |
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Preference number: 5 (lower is better) Translates to: EEEYGSETTYLGTKRKGYIASQT*LAKEVN Trigger: ATTCACCTCTTTTGCTAGCAAGGTTTGAGATGCTAT...GTACCCCTTTCTTTTAGTACCTAAATATGTTGTTTCTGAGCCATATTCTTCTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400577.4 |
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| CDS CCA 72 bp | TGGAGCTGTCATTTCATAGTAAGGAAGCTGCAGCACTaGATTATACACATGCCACTGCATCTTCTGAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: WSCHFIVRKLQH*IIHMPLHLLKE Trigger: CTCTTTCAGAAGATGCAGTGGCATGTGTATAATCCAGTGCTGCAGCTTCCTTACTATGAAATGACAGCTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000400577.4 ENST00000468643.5 ENST00000475864.1 ENST00000495055.1 |
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| CDS CAA 72 bp | GACTTTCGGAACTTTTGGCTACATTCGTTGCCTCTGTaGTTGTCTGTGCTACTATCACTATCACTTGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: DFRNFWLHSLPL*LSVLLSLSLVC Trigger: GCAAACAAGTGATAGTGATAGTAGCACAGACAACAACAGAGGCAACGAATGTAGCCAAAAGTTCCGAAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000400577.4 ENST00000468643.5 ENST00000475864.1 ENST00000495055.1 |
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| CDS CAA 90 bp | TTAAAGCAGACAAATCCAAAAGACTTTGGCTTTCCTTCTCTGTCTTaGCATATAGTCACTTTGGTTAGTGGCCCCGCCTATAAGAAACTG | + |
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Preference number: 6 (lower is better) Translates to: LKQTNPKDFGFPSLS*HIVTLVSGPAYKKL Trigger: CAGTTTCTTATAGGCGGGGCCACTAACCAAAGTGACTATATGCAAAGACAGAGAAGGAAAGCCAAAGTCTTTTGGATTTGTCTGCTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000468643.5 ENST00000468788.5 |
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| CDS CCA 72 bp | TTGTGTGAATTTATCTTAACACAGCTCTCAAAACTTTaGTTAGCTGGTTCAGAAGAGCGAGAACTCCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: LCEFILTQLSKL*LAGSEERELPE Trigger: TTCAGGGAGTTCTCGCTCTTCTGAACCAGCTAACCAAAGTTTTGAGAGCTGTGTTAAGATAAATTCACACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495055.1 |
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| CDS CCA 72 bp | TTGTGTGAATTTATCTTAACACAGCTCTCAAAACTTTaGTTAGCTGGTTCAGAAGAGCGAGAACTCCCAAAT | + |
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Preference number: 6 (lower is better) Translates to: LCEFILTQLSKL*LAGSEERELPN Trigger: ATTTGGGAGTTCTCGCTCTTCTGAACCAGCTAACCAAAGTTTTGAGAGCTGTGTTAAGATAAATTCACACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000400577.4 ENST00000461088.1 ENST00000468643.5 ENST00000468788.5 |
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