Pregenerated sensors for RBIS (Homo sapiens)
Ensembl gene IDs: ENSG00000176731Ensembl transcript IDs: ENST00000321777.5, ENST00000518786.1, ENST00000521286.1, ENST00000523281.5, ENST00000612809.4, ENST00000614462.4, ENST00000619594.5
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGAAAGTTAAAGGACACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTTTACTGCCACTAAACTaGCTGTATTTCTGTATGTCC | + |
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Preference number: 2 (lower is better) Translates to: GKLKDTTGHQKQVGQGLILLPLN*LYFCMS Trigger: GGACATACAGAAATACAGGCAGTTTAGTGGCAGTAA...AATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTGTCCTTTAACTTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS-3UTR GCA 90 bp | AGGAAAGTTAAAGGACACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATAGTTTAACACTTGCGTaGAGCTTTTTAAGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RKVKGHYRSSKTSWPRTHSLTLA*SFLSSR Trigger: CCTGGAGCTTAAAAAGCTGCACGCAAGTGTTAAACT...ATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTGTCCTTTAACTTTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS-3UTR GCA 90 bp | GGAAAGTTAAAGGACACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTCAGAAGTTTAACACTTaGGTGCAGCTTTTTAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: GKLKDTTGHQKQVGQGLIQKFNT*VQLFKL Trigger: GAGCTTAAAAAGCTGCACGCAAGTGTTAAACTTCTG...AATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTGTCCTTTAACTTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS-3UTR GCA 90 bp | GTTAAAGGACACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTACTTGTTACTGCCACTAAACTaGCTGTATTTCTGTATGTCC | + |
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Preference number: 4 (lower is better) Translates to: VKGHYRSSKTSWPRTHYLLLPLN*LYFCMS Trigger: GGACATACAGAAATACAGGCAGTTTAGTGGCAGTAA...CAAGTAATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTGTCCTTTAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS-3UTR GCA 90 bp | CACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTACTTGTCTTATATTAGTTTAACACTTGCGTaGAGCTTTTTAAGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: HYRSSKTSWPRTHYLSYISLTLA*SFLSSR Trigger: CCTGGAGCTTAAAAAGCTGCACGCAAGTGTTAAACT...AATATAAGACAAGTAATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS-3UTR GCA 90 bp | GTTAAAGGACACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTACTTGGAGGTTCAAGTGAAATaGTTTTTGCGAAATGTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: VKGHYRSSKTSWPRTHYLEVQVK*FLRNVQ Trigger: TTGCACATTTCGCAAAAAGCATTTCACTTGAACCTC...CAAGTAATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTGTCCTTTAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000619594.5 |
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| CDS-3UTR GCA 90 bp | CACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTACTTGTCTTATATTCAGAAGTTTAACACTTaGGTGCAGCTTTTTAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: HYRSSKTSWPRTHYLSYIQKFNT*VQLFKL Trigger: GAGCTTAAAAAGCTGCACGCAAGTGTTAAACTTCTG...AATATAAGACAAGTAATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS-3UTR GCA 90 bp | CACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTACTTGTCTTATATTTTACTGCCACTAAACTaGCTGTATTTCTGTATGTCC | + |
|
Preference number: 4 (lower is better) Translates to: HYRSSKTSWPRTHYLSYILLPLN*LYFCMS Trigger: GGACATACAGAAATACAGGCAGTTTAGTGGCAGTAA...AATATAAGACAAGTAATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS TCA 90 bp | TGTATAAGGGGCAACGTGCCTTGGCTTGGCATATTACTGGCACTCTaGATCTACCCTAAATCTGCCACACATATCTCCTGTTACGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: CIRGNVPWLGILLAL*IYPKSATHISCYVP Trigger: AGGGACGTAACAGGAGATATGTGTGGCAGATTTAGGGTAGATTCAGAGTGCCAGTAATATGCCAAGCCAAGGCACGTTGCCCCTTATACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000518786.1 ENST00000521286.1 ENST00000523281.5 |
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| CDS-3UTR CAA 90 bp | GGAAAGTTAAAGGACACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTCCAAGGACTCATTACTaGTCTTATATTTTTACTGCC | + |
|
Preference number: 5 (lower is better) Translates to: GKLKDTTGHQKQVGQGLIPRTHY*SYIFTA Trigger: GGCAGTAAAAATATAAGACAAGTAATGAGTCCTTGG...AATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTGTCCTTTAACTTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS-3UTR CAA 90 bp | CACTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTACTTGTCTTATATTGTCATCAAAAACAAGTaGGCCAAGGACTCATTACTT | + |
|
Preference number: 5 (lower is better) Translates to: HYRSSKTSWPRTHYLSYIVIKNK*AKDSLL Trigger: AAGTAATGAGTCCTTGGCCAACTTGTTTTTGATGAC...AATATAAGACAAGTAATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS-3UTR CAA 90 bp | CTACAGGTCATCAAAAACAAGTTGGCCAAGGACTCATTACTTGTCTTATATTTTCCAAGGACTCATTACTaGTCTTATATTTTTACTGCC | + |
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Preference number: 5 (lower is better) Translates to: LQVIKNKLAKDSLLVLYFPRTHY*SYIFTA Trigger: GGCAGTAAAAATATAAGACAAGTAATGAGTCCTTGG...AAAATATAAGACAAGTAATGAGTCCTTGGCCAACTTGTTTTTGATGACCTGTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000614462.4 ENST00000619594.5 |
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| CDS CAA 72 bp | TCCCAGCTACTCGGGAGACTGAGGAAGGAGAATCGCTaGAATCCGGAAGGCGAAGGTTGCAGTGAGCCAAGA | + |
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Preference number: 6 (lower is better) Translates to: SQLLGRLRKENR*NPEGEGCSEPR Trigger: TCTTGGCTCACTGCAACCTTCGCCTTCCGGATTCAAGCGATTCTCCTTCCTCAGTCTCCCGAGTAGCTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000518786.1 ENST00000521286.1 ENST00000523281.5 |
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| CDS TCA 72 bp | GGCAACGTGCCTTGGCTTGGCATATTACTGGCACTCTaGATCTACCCTAAATCTGCCACACATATCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: GNVPWLGILLAL*IYPKSATHISC Trigger: ACAGGAGATATGTGTGGCAGATTTAGGGTAGATTCAGAGTGCCAGTAATATGCCAAGCCAAGGCACGTTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000518786.1 ENST00000521286.1 ENST00000523281.5 |
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| CDS GCA 72 bp | TGCCACACATATCTCCTGTTACGTCCCTATAAACACTaGTCTAGCCAGCCTGGTCTAACTGTTCTCTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: CHTYLLLRPYKH*SSQPGLTVLLH Trigger: GTGCAAGAGAACAGTTAGACCAGGCTGGCTAGAGCAGTGTTTATAGGGACGTAACAGGAGATATGTGTGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000518786.1 ENST00000521286.1 ENST00000523281.5 |
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| CDS CAA 72 bp | TCAACAGTTTTCCCAATGTATAAGGGGCAACGTGCCTaGGCTTGGCATATTACTGGCACTCTGAATCTACCC | + |
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Preference number: 6 (lower is better) Translates to: STVFPMYKGQRA*AWHITGTLNLP Trigger: GGGTAGATTCAGAGTGCCAGTAATATGCCAAGCCAAGGCACGTTGCCCCTTATACATTGGGAAAACTGTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000518786.1 ENST00000521286.1 ENST00000523281.5 |
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| CDS TCA 72 bp | ATTTGTTCTTGGCCATTGTTGAAACAGCAATGCTTTTaGACGCCAACAGTATTCCTCCTACAGAAGTTTAAC | + |
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Preference number: 6 (lower is better) Translates to: ICSWPLLKQQCF*TPTVFLLQKFN Trigger: GTTAAACTTCTGTAGGAGGAATACTGTTGGCGTTCAAAAGCATTGCTGTTTCAACAATGGCCAAGAACAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000321777.5 ENST00000612809.4 |
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| CDS GCA 72 bp | TGTCCATTCAATCATATGCTGATATGGCTGCTTTCCTaGTATAACTATGACCCACAAAGTCCAAAATATTTA | + |
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Preference number: 6 (lower is better) Translates to: CPFNHMLIWLLS*YNYDPQSPKYL Trigger: TAAATATTTTGGACTTTGTGGGTCATAGTTATAGCAGGAAAGCAGCCATATCAGCATATGATTGAATGGACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000518786.1 ENST00000521286.1 ENST00000523281.5 |
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