RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAVER2 (Homo sapiens)

Ensembl gene IDs: ENSG00000162437

Ensembl transcript IDs: ENST00000294428.7, ENST00000371072.8, ENST00000418058.1

Found 325 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TATGAACAAGCGTGCGCTAGAAGCAGGGACTGTCAAAGGAGACACTaGACAGTGCAGGGAGGATTCATTTCCCCACCATATCTCTGGGCA +
Preference number: 1 (lower is better)
Translates to: YEQACARSRDCQRRH*TVQGGFISPPYLWA
Trigger: TGCCCAGAGATATGGTGGGGAAATGAATCCTCCCTGCACTGTTCAGTGTCTCCTTTGACAGTCCCTGCTTCTAGCGCACGCTTGTTCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR CCA 90 bp AGGGATGGGTCAGGCAAACACAAAGCTGCTCCAGGGAAATCAAAGTaGAGACAAGACTCCAACGAACAGGATAGATCTGAGAAGAAGCTG +
Preference number: 1 (lower is better)
Translates to: RDGSGKHKAAPGKSK*RQDSNEQDRSEKKL
Trigger: CAGCTTCTTCTCAGATCTATCCTGTTCGTTGGAGTCTTGTCTCCACTTTGATTTCCCTGGAGCAGCTTTGTGTTTGCCTGACCCATCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR CCA 90 bp GCAGGGAGGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTaGAGGCAGAAGACATACAGTAATGCAAAAGGCATCATTATCACA +
Preference number: 1 (lower is better)
Translates to: AGRIHFPTISLGKQV*RQKTYSNAKGIIIT
Trigger: TGTGATAATGATGCCTTTTGCATTACTGTATGTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCCTCCCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR GCA 90 bp ATGCGTGTTGTGATTCACTTCCCTGAGAGATTGCATCCAGAATGCTaGTTGCAATTCCAGTCTTATGAAGAGTGGTTTTACTTGCAGGGG +
Preference number: 1 (lower is better)
Translates to: MRVVIHFPERLHPEC*LQFQSYEEWFYLQG
Trigger: CCCCTGCAAGTAAAACCACTCTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTGAATCACAACACGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR GCA 90 bp CCAATGCGTGTTGTGATTCACTTCCCTGAGAGATTGCATCCAGAATaGTGCTTGCAATTCCAGTCTTATGAAGAGTGGTTTTACTTGCAG +
Preference number: 1 (lower is better)
Translates to: PMRVVIHFPERLHPE*CLQFQSYEEWFYLQ
Trigger: CTGCAAGTAAAACCACTCTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTGAATCACAACACGCATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR TCA 90 bp ACCAAAAGGTGGAGAATAAGCAATGCACTTTTCCAATGCGTGTTGTaGTTCACTTCCCTGAGAGATTGCATCCAGAATGCTGCTTGCAAT +
Preference number: 1 (lower is better)
Translates to: TKRWRISNALFQCVL*FTSLRDCIQNAACN
Trigger: ATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTGAATCACAACACGCATTGGAAAAGTGCATTGCTTATTCTCCACCTTTTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR TCA 90 bp ACACACTGGGCAACACACTTGCCAAATTCAAGTATGGATTTTTACTaGGCCGAATTTCTTTTGGTGGTTCTCCCAAGAGTGAAGTTTGAT +
Preference number: 1 (lower is better)
Translates to: THWATHLPNSSMDFY*AEFLLVVLPRVKFD
Trigger: ATCAAACTTCACTCTTGGGAGAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAATTTGGCAAGTGTGTTGCCCAGTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR GCA 90 bp AATTATTTACCTGTGCATAATCACCAAAAGGTGGAGAATAAGCAATaGACTTTTCCAATGCGTGTTGTGATTCACTTCCCTGAGAGATTG +
Preference number: 1 (lower is better)
Translates to: NYLPVHNHQKVENKQ*TFPMRVVIHFPERL
Trigger: CAATCTCTCAGGGAAGTGAATCACAACACGCATTGGAAAAGTGCATTGCTTATTCTCCACCTTTTGGTGATTATGCACAGGTAAATAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR TCA 90 bp AGGGCTAACATGATATATATTCAGCTTACACCACTAAGAGTAAGCTaGAGAAGGGCCAAAGCAAAACTGAAATATTTAAGTAATGACACA +
Preference number: 1 (lower is better)
Translates to: RANMIYIQLTPLRVS*RRAKAKLKYLSNDT
Trigger: TGTGTCATTACTTAAATATTTCAGTTTTGCTTTGGCCCTTCTTCAGCTTACTCTTAGTGGTGTAAGCTGAATATATATCATGTTAGCCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGTGGTAGACCAAATGTaGACCCAGGGTGTAGTTTGC +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTVVDQM*TQGVVC
Trigger: GCAAACTACACCCTGGGTCCACATTTGGTCTACCAC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAAGTTAAGGCAGCGATaGACAGCAGAGATACTGCAG +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTKLRQR*TAEILQ
Trigger: CTGCAGTATCTCTGCTGTTCATCGCTGCCTTAACTT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCAAAAAGCCCCGGATTaGGATCCCAAATTCCCTATC +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTQKAPD*DPKFPI
Trigger: GATAGGGAATTTGGGATCTCAATCCGGGGCTTTTTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCCTGCTTTGACTGACTaGCTTTTTGCAGCTCTGTTG +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTPALTD*LFAALL
Trigger: CAACAGAGCTGCAAAAAGTCAGTCAGTCAAAGCAGG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGTCTACGCTATGAAATaGGCACAGAAACCCATGTTC +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTVYAMK*AQKPMF
Trigger: GAACATGGGTTTCTGTGCTCATTTCATAGCGTAGAC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTCTTCCTGCTTTGACTaGCTGACTTTTTGCAGCTCT +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSSCFD*LTFCSS
Trigger: AGAGCTGCAAAAAGTCAGTCAGTCAAAGCAGGAAGA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTTTGGCATTTCTGCCTaGTGCACAACACAGTTCCTT +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTFGISA*CTTQFL
Trigger: AAGGAACTGTGTTGTGCAGCAGGCAGAAATGCCAAA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAATGCAACAGGAAAATaGGAAAGAGAAGTGCAGGGC +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTNATGK*EREVQG
Trigger: GCCCTGCACTTCTCTTTCCCATTTTCCTGTTGCATT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAGGATATGGCTAGTTTaGATGAAGTTAAGGCAGCGA +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTRIWLV*MKLRQR
Trigger: TCGCTGCCTTAACTTCATTCAAACTAGCCATATCCT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAGGTCTGTCTTTAGGTaGATTGAAAGGAATAGTTGC +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTRSVFR*IERNSC
Trigger: GCAACTATTCCTTTCAATTCACCTAAAGACAGACCT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTTTATTTGGCATTTCTaGCTGCTGCACAACACAGTT +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTFIWHF*LLHNTV
Trigger: AACTGTGTTGTGCAGCAGGCAGAAATGCCAAATAAA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTACCCAGGGTGTAGTTTaGCAAACCCTTTTATTAGAT +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTTQGVV*QTLLLD
Trigger: ATCTAATAAAAGGGTTTGGCAAACTACACCCTGGGT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGACTCCATCAGAAAGTaGAGTATTGACTGCTTTACT +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTDSIRK*SIDCFT
Trigger: AGTAAAGCAGTCAATACTGCACTTTCTGATGGAGTC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTATTGAAGAGGCTGAATaGAACAGGAAAATGGGAAAG +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTIEEAE*NRKMGK
Trigger: CTTTCCCATTTTCCTGTTGCATTCAGCCTCTTCAAT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCAACACAGTTCCTTCTaGGAAACTATAAACCCGTAT +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTQHSSF*ETINPY
Trigger: ATACGGGTTTATAGTTTCCCAGAAGGAACTGTGTTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAAATGGCCAGATACTTaGAATTTTAGGCCATATGGT +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTKWPDT*NFRPYG
Trigger: ACCATATGGCCTAAAATTTCAAGTATCTGGCCATTT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTTTTTGCAGCTCTGTTaGAAAATTCACCATCTTTCC +
Preference number: 2 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTFLQLC*KIHHLS
Trigger: GGAAAGATGGTGAATTTTGCAACAGAGCTGCAAAAA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CCA 90 bp GGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACATATGATAAGCACACACTaGGCAACACACTTGCCAAAT +
Preference number: 2 (lower is better)
Translates to: GFISPPYLWASKCGGRRHMISTH*ATHLPN
Trigger: ATTTGGCAAGTGTGTTGCCCAGTGTGTGCTTATCAT...ATGTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CCA 90 bp GGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACATCAGTCTTATGAAGAGTaGTTTTACTTGCAGGGGATG +
Preference number: 2 (lower is better)
Translates to: GFISPPYLWASKCGGRRHQSYEE*FYLQGM
Trigger: CATCCCCTGCAAGTAAAACCACTCTTCATAAGACTG...ATGTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR CAA 90 bp CGTGTTGTGATTCACTTCCCTGAGAGATTGCATCCAGAATGCTGCTaGCAATTCCAGTCTTATGAAGAGTGGTTTTACTTGCAGGGGATG +
Preference number: 2 (lower is better)
Translates to: RVVIHFPERLHPECC*QFQSYEEWFYLQGM
Trigger: CATCCCCTGCAAGTAAAACCACTCTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTGAATCACAACACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CCA 90 bp GAGGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACAGTATCATCAGAACCTaGGAATTATTTACCTGTGCA +
Preference number: 2 (lower is better)
Translates to: EDSFPHHISGQASVEAEDSIIRT*ELFTCA
Trigger: TGCACAGGTAAATAATTCCCAGGTTCTGATGATACT...GTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR CAA 90 bp CAATGCACTTTTCCAATGCGTGTTGTGATTCACTTCCCTGAGAGATaGCATCCAGAATGCTGCTTGCAATTCCAGTCTTATGAAGAGTGG +
Preference number: 2 (lower is better)
Translates to: QCTFPMRVVIHFPER*HPECCLQFQSYEEW
Trigger: CCACTCTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTGAATCACAACACGCATTGGAAAAGTGCATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR GCA 90 bp GGCCACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCAACTTCCCTGAGAGATTaGATCCAGAATGCTGCTTGC +
Preference number: 2 (lower is better)
Translates to: GHIVSTVITQLFYYSMTATSLRD*IQNAAC
Trigger: GCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT...TGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTGGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR TCA 90 bp GGCCACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCATTCCAATGCGTGTTGTaGTTCACTTCCCTGAGAGAT +
Preference number: 2 (lower is better)
Translates to: GHIVSTVITQLFYYSMTAFQCVL*FTSLRD
Trigger: ATCTCTCAGGGAAGTGAATCACAACACGCATTGGAA...TGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR CAA 90 bp TCCTTCTGGGAAACTATAAACCCGTATTTAAAGGATATGGCTAGTTaGAATGAAGTTAAGGCAGCGATGAACAGCAGAGATACTGCAGAG +
Preference number: 2 (lower is better)
Translates to: SFWETINPYLKDMAS*NEVKAAMNSRDTAE
Trigger: CTCTGCAGTATCTCTGCTGTTCATCGCTGCCTTAACTTCATTCAAACTAGCCATATCCTTTAAATACGGGTTTATAGTTTCCCAGAAGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAAGTTAAGGCAGCGATaGACAGCAGAGATACTGCAG +
Preference number: 2 (lower is better)
Translates to: HVEHLYNITISTFGTCTLKLRQR*TAEILQ
Trigger: CTGCAGTATCTCTGCTGTTCATCGCTGCCTTAACTT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TACTGTCACCTAATTACATCATCTACCCAACCCATATTTTTCCGTCTTGTCCCATCTTGTGGACTCTTATaGTTCCATAATCACACAGGG +
Preference number: 2 (lower is better)
Translates to: YCHLITSSTQPIFFRLVPSCGLL*FHNHTG
Trigger: CCCTGTGTGATTATGGAATCATAAGAGTCCACAAGA...TGGGACAAGACGGAAAAATATGGGTTGGGTAGATGATGTAATTAGGTGACAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR GCA 90 bp CAGAACCTGGGAATTATTTACCTGTGCATAATCACCAAAAGGTGGAGAATAAGCAGATTGCATCCAGAATaGTGCTTGCAATTCCAGTCT +
Preference number: 2 (lower is better)
Translates to: QNLGIIYLCIITKRWRISRLHPE*CLQFQS
Trigger: AGACTGGAATTGCAAGCAGCATTCTGGATGCAATCT...GCTTATTCTCCACCTTTTGGTGATTATGCACAGGTAAATAATTCCCAGGTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTTGGCATTTCTGCCTaGTGCACAACACAGTTCCTT +
Preference number: 2 (lower is better)
Translates to: HVEHLYNITISTFGTCTLFGISA*CTTQFL
Trigger: AAGGAACTGTGTTGTGCAGCAGGCAGAAATGCCAAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR GCA 90 bp TACTGTCACCTAATTACATCATCTACCCAACCCATATTTTTCCGTCTTGTCCCATTGCATCCAGAATGCTaGTTGCAATTCCAGTCTTAT +
Preference number: 2 (lower is better)
Translates to: YCHLITSSTQPIFFRLVPLHPEC*LQFQSY
Trigger: ATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAA...TGGGACAAGACGGAAAAATATGGGTTGGGTAGATGATGTAATTAGGTGACAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR CAA 90 bp ATAAATGGTAAACAACATCTTAAAGCATCGGTAGTAGTGGATACCTaGGATATCACTGTCACTCTCTTACCGGGTTTAATTTTGCATGGC +
Preference number: 2 (lower is better)
Translates to: INGKQHLKASVVVDT*DITVTLLPGLILHG
Trigger: GCCATGCAAAATTAAACCCGGTAAGAGAGTGACAGTGATATCCAAGGTATCCACTACTACCGATGCTTTAAGATGTTGTTTACCATTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAGGATATGGCTAGTTTaGATGAAGTTAAGGCAGCGA +
Preference number: 2 (lower is better)
Translates to: HVEHLYNITISTFGTCTLRIWLV*MKLRQR
Trigger: TCGCTGCCTTAACTTCATTCAAACTAGCCATATCCT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp TACTGTCACCTAATTACATCATCTACCCAACCCATATTTTTCCGTCTTGTCCCAAGTATGGATTTTTACTaGGCCGAATTTCTTTTGGTG +
Preference number: 2 (lower is better)
Translates to: YCHLITSSTQPIFFRLVPSMDFY*AEFLLV
Trigger: CACCAAAAGAAATTCGGCTCAGTAAAAATCCATACT...TGGGACAAGACGGAAAAATATGGGTTGGGTAGATGATGTAATTAGGTGACAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CCA 90 bp GAATGCCTTCAGACTGCAGCAATTTGTGATCACTGTTCTCTAAATATAGATATACCAGGGAAATCAAAGTaGAGACAAGACTCCAACGAA +
Preference number: 2 (lower is better)
Translates to: ECLQTAAICDHCSLNIDIPGKSK*RQDSNE
Trigger: TTCGTTGGAGTCTTGTCTCCACTTTGATTTCCCTGG...TATATCTATATTTAGAGAACAGTGATCACAAATTGCTGCAGTCTGAAGGCATTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTTATTTGGCATTTCTaGCTGCTGCACAACACAGTT +
Preference number: 2 (lower is better)
Translates to: HVEHLYNITISTFGTCTLFIWHF*LLHNTV
Trigger: AACTGTGTTGTGCAGCAGGCAGAAATGCCAAATAAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR GCA 90 bp CACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCACCAGGAATTATTTACCTGTaGATAATCACCAAAAGGTGG +
Preference number: 2 (lower is better)
Translates to: HIVSTVITQLFYYSMTAPGIIYL*IITKRW
Trigger: CCACCTTTTGGTGATTATGCACAGGTAAATAATTCC...TGGTGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCAACACAGTTCCTTCTaGGAAACTATAAACCCGTAT +
Preference number: 2 (lower is better)
Translates to: HVEHLYNITISTFGTCTLQHSSF*ETINPY
Trigger: ATACGGGTTTATAGTTTCCCAGAAGGAACTGTGTTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR CAA 90 bp CACTTACAAGTCTGTCTAAAGGCTAAAGGTCTGTCTTTAGGTGAATaGAAAGGAATAGTTGCTATTAGAATTAGTGCTATTAGATCAGGG +
Preference number: 2 (lower is better)
Translates to: HLQVCLKAKGLSLGE*KGIVAIRISAIRSG
Trigger: CCCTGATCTAATAGCACTAATTCTAATAGCAACTATTCCTTTCAATTCACCTAAAGACAGACCTTTAGCCTTTAGACAGACTTGTAAGTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR TCA 90 bp GAATGCCTTCAGACTGCAGCAATTTGTGATCACTGTTCTCTAAATATAGATATAGCAATTCCAGTCTTATaGAGAGTGGTTTTACTTGCA +
Preference number: 2 (lower is better)
Translates to: ECLQTAAICDHCSLNIDIAIPVL*RVVLLA
Trigger: TGCAAGTAAAACCACTCTTCATAAGACTGGAATTGC...TATATCTATATTTAGAGAACAGTGATCACAAATTGCTGCAGTCTGAAGGCATTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR TCA 90 bp GAATGCCTTCAGACTGCAGCAATTTGTGATCACTGTTCTCTAAATATAGATATATTGAACCAATTTTTCTaGGTATCATCAGAACCTGGG +
Preference number: 2 (lower is better)
Translates to: ECLQTAAICDHCSLNIDILNQFF*VSSEPG
Trigger: CCCAGGTTCTGATGATACTCAGAAAAATTGGTTCAA...TATATCTATATTTAGAGAACAGTGATCACAAATTGCTGCAGTCTGAAGGCATTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR GCA 90 bp TACAATACAAATTTATTTACAAAACCAGGTGGTGGGCTAGATTTGTTCTATGGGACTGGGCAACACACTTaGCAAATTCAAGTATGGATT +
Preference number: 2 (lower is better)
Translates to: YNTNLFTKPGGGLDLFYGTGQHT*QIQVWI
Trigger: AATCCATACTTGAATTTGGCAAGTGTGTTGCCCAGT...CCCATAGAACAAATCTAGCCCACCACCTGGTTTTGTAAATAAATTTGTATTGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CCA 90 bp GAATGCCTTCAGACTGCAGCAATTTGTGATCACTGTTCTCTAAATATAGATATAATAATCACCAAAAGGTaGAGAATAAGCAATGCACTT +
Preference number: 2 (lower is better)
Translates to: ECLQTAAICDHCSLNIDIIITKR*RISNAL
Trigger: AAGTGCATTGCTTATTCTCCACCTTTTGGTGATTAT...TATATCTATATTTAGAGAACAGTGATCACAAATTGCTGCAGTCTGAAGGCATTC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR TCA 72 bp GCGTGCGCTAGAAGCAGGGACTGTCAAAGGAGACACTaGACAGTGCAGGGAGGATTCATTTCCCCACCATAT +
Preference number: 3 (lower is better)
Translates to: ACARSRDCQRRH*TVQGGFISPPY
Trigger: ATATGGTGGGGAAATGAATCCTCCCTGCACTGTTCAGTGTCTCCTTTGACAGTCCCTGCTTCTAGCGCACGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTTACCGGGTTTAATTTaGCATGGCTGGTGTGGGCGT +
Preference number: 3 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTLPGLI*HGWCGR
Trigger: ACGCCCACACCAGCCATGCAAAATTAAACCCGGTAA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCAGCACATTTGGTACTaGCACCCTTGTAGTTCTAGG +
Preference number: 3 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTQHIWY*HPCSSR
Trigger: CCTAGAACTACAAGGGTGCAAGTACCAAATGTGCTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGCCATACAGTCTCTGTaGAAGCTAATCAGTTCTGCC +
Preference number: 3 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTAIQSL*KLISSA
Trigger: GGCAGAACTGATTAGCTTCAACAGAGACTGTATGGC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGTAGTAGTGGATACCTaGGATATCACTGTCACTCTC +
Preference number: 3 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTVVVDT*DITVTL
Trigger: GAGAGTGACAGTGATATCCAAGGTATCCACTACTAC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTCAAAAAGCCCCGGATaGAGATCCCAAATTCCCTAT +
Preference number: 3 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSKSPG*RSQIPY
Trigger: ATAGGGAATTTGGGATCTCAATCCGGGGCTTTTTGA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAAGGATATGGCTAGTTaGAATGAAGTTAAGGCAGCG +
Preference number: 3 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTKDMAS*NEVKAA
Trigger: CGCTGCCTTAACTTCATTCAAACTAGCCATATCCTT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR GCA 72 bp GTAGGCCATACAGTCTCTGTTGAAGCTAATCAGTTCTaGCCTTGTAGCGTAAGAGTGCCACAGACAACACGT +
Preference number: 3 (lower is better)
Translates to: VGHTVSVEANQF*PCSVRVPQTTR
Trigger: ACGTGTTGTCTGTGGCACTCTTACGCTACAAGGGCAGAACTGATTAGCTTCAACAGAGACTGTATGGCCTAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR CCA 72 bp TTGCAGGCAGCACAAAAGCGGGTGGTAGACCAAATGTaGACCCAGGGTGTAGTTTGCCAAACCCTTTTATTA +
Preference number: 3 (lower is better)
Translates to: LQAAQKRVVDQM*TQGVVCQTLLL
Trigger: TAATAAAAGGGTTTGGCAAACTACACCCTGGGTCCACATTTGGTCTACCACCCGCTTTTGTGCTGCCTGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCTTTTTGCAGCTCTGTaGCAAAATTCACCATCTTTC +
Preference number: 3 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTLFAAL*QNSPSF
Trigger: GAAAGATGGTGAATTTTGCAACAGAGCTGCAAAAAG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGTAGTCCAGACACCTTaGTTTGTTTGTTTTAGTTCC +
Preference number: 3 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTVVQTP*FVCFSS
Trigger: GGAACTAAAACAAACAAACAAAGGTGTCTGGACTAC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR CCA 72 bp TCAGGCAAACACAAAGCTGCTCCAGGGAAATCAAAGTaGAGACAAGACTCCAACGAACAGGATAGATCTGAG +
Preference number: 3 (lower is better)
Translates to: SGKHKAAPGKSK*RQDSNEQDRSE
Trigger: CTCAGATCTATCCTGTTCGTTGGAGTCTTGTCTCCACTTTGATTTCCCTGGAGCAGCTTTGTGTTTGCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR TCA 72 bp ATGCACTTTTCCAATGCGTGTTGTGATTCACTTCCCTaGGAGATTGCATCCAGAATGCTGCTTGCAATTCCA +
Preference number: 3 (lower is better)
Translates to: MHFSNACCDSLP*EIASRMLLAIP
Trigger: TGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTGAATCACAACACGCATTGGAAAAGTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR GCA 72 bp CGGGTGGTAGACCAAATGTGGACCCAGGGTGTAGTTTaGCAAACCCTTTTATTAGATCACCAAAGTTACTTT +
Preference number: 3 (lower is better)
Translates to: RVVDQMWTQGVV*QTLLLDHQSYF
Trigger: AAAGTAACTTTGGTGATCTAATAAAAGGGTTTGGCAAACTACACCCTGGGTCCACATTTGGTCTACCACCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR-3UTR CAA 90 bp CATGATATATATTCAGCTTACACCACTAAGAGTAAGCTGAAGAAGGGCCAAAGCAACAGAGGCATTCCCTaGGGTTTCTTAGGTCTACAC +
Preference number: 3 (lower is better)
Translates to: HDIYSAYTTKSKLKKGQSNRGIP*GFLGLH
Trigger: GTGTAGACCTAAGAAACCCAAGGGAATGCCTCTGTT...GCTTTGGCCCTTCTTCAGCTTACTCTTAGTGGTGTAAGCTGAATATATATCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR TCA 72 bp ATTGCATCCAGAATGCTGCTTGCAATTCCAGTCTTATaGAGAGTGGTTTTACTTGCAGGGGATGATAAGCAC +
Preference number: 3 (lower is better)
Translates to: IASRMLLAIPVL*RVVLLAGDDKH
Trigger: GTGCTTATCATCCCCTGCAAGTAAAACCACTCTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR TCA 72 bp TGGAGAATAAGCAATGCACTTTTCCAATGCGTGTTGTaGTTCACTTCCCTGAGAGATTGCATCCAGAATGCT +
Preference number: 3 (lower is better)
Translates to: WRISNALFQCVL*FTSLRDCIQNA
Trigger: AGCATTCTGGATGCAATCTCTCAGGGAAGTGAATCACAACACGCATTGGAAAAGTGCATTGCTTATTCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR GCA 72 bp GTGATTCACTTCCCTGAGAGATTGCATCCAGAATGCTaGTTGCAATTCCAGTCTTATGAAGAGTGGTTTTAC +
Preference number: 3 (lower is better)
Translates to: VIHFPERLHPEC*LQFQSYEEWFY
Trigger: GTAAAACCACTCTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTGAATCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR CCA 72 bp GCACACACTGGGCAACACACTTGCCAAATTCAAGTATaGATTTTTACTGAGCCGAATTTCTTTTGGTGGTTC +
Preference number: 3 (lower is better)
Translates to: AHTGQHTCQIQV*IFTEPNFFWWF
Trigger: GAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAATTTGGCAAGTGTGTTGCCCAGTGTGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CAA 90 bp TACTGTCACCTAATTACATCATCTACCCAACCCATATTTTTCCGTCTTGTCCCACACTGGGCAACACACTaGCCAAATTCAAGTATGGAT +
Preference number: 3 (lower is better)
Translates to: YCHLITSSTQPIFFRLVPHWATH*PNSSMD
Trigger: ATCCATACTTGAATTTGGCAAGTGTGTTGCCCAGTG...TGGGACAAGACGGAAAAATATGGGTTGGGTAGATGATGTAATTAGGTGACAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR TCA 72 bp GCAACACACTTGCCAAATTCAAGTATGGATTTTTACTaGGCCGAATTTCTTTTGGTGGTTCTCCCAAGAGTG +
Preference number: 3 (lower is better)
Translates to: ATHLPNSSMDFY*AEFLLVVLPRV
Trigger: CACTCTTGGGAGAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAATTTGGCAAGTGTGTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CAA 90 bp TACAATACAAATTTATTTACAAAACCAGGTGGTGGGCTAGATTTGTTCTATGGGCACTTCCCTGAGAGATaGCATCCAGAATGCTGCTTG +
Preference number: 3 (lower is better)
Translates to: YNTNLFTKPGGGLDLFYGHFPER*HPECCL
Trigger: CAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTG...CCCATAGAACAAATCTAGCCCACCACCTGGTTTTGTAAATAAATTTGTATTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAAGGATATGGCTAGTTaGAATGAAGTTAAGGCAGCG +
Preference number: 3 (lower is better)
Translates to: HVEHLYNITISTFGTCTLKDMAS*NEVKAA
Trigger: CGCTGCCTTAACTTCATTCAAACTAGCCATATCCTT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR TCA 72 bp TCTCTACTGTCATCACTCAACTCTTTTATTATAGCATaGCAGCACCATAGACAATATGTTAATGAATGGACA +
Preference number: 3 (lower is better)
Translates to: SLLSSLNSFIIA*QHHRQYVNEWT
Trigger: TGTCCATTCATTAACATATTGTCTATGGTGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTCCCGCTGCATCCGCTaGAGTCGCGCGGCGACCTCC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSRCIR*SRAATS
Trigger: GGAGGTCGCCGCGCGACTGCAGCGGATGCAGCGGGA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTATCCCTAGTGCAGTCTaGAGTACCACAGCTGGGGGC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTIPSAV*STTAGG
Trigger: GCCCCCAGCTGTGGTACTTCAGACTGCACTAGGGAT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGGATTTTCCTGCGGTTaGTCAGCTCCCGCTGCATCC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTGFSCG*SAPAAS
Trigger: GGATGCAGCGGGAGCTGAGCAACCGCAGGAAAATCC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTATACCGTCTGCTGCCTaGTGGACCTCTTCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTIPSAA*WTSSAC
Trigger: GCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGTAT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGGTCATACCGTCTGCTaGCTGCTGGACCTCTTCAGC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTGHTVC*LLDLFS
Trigger: GCTGAAGAGGTCCAGCAGGCAGCAGACGGTATGACC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGGCTGGCTTTGCTGCTaGTTATGGTGTCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTGWLCC*LWCPTS
Trigger: GCTGGTGGGACACCATAAGCAGCAGCAAAGCCAGCC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCTGCCATTCCCACCGTaGCTGGCTGTTTCTCCTGAG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTLPFPP*LAVSPE
Trigger: CTCAGGAGAAACAGCCAGCCACGGTGGGAATGGCAG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGGGCACAGGCCAGTATaGATGGCATGTCCACTGTGC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTGHRPV*MACPLC
Trigger: GCACAGTGGACATGCCATCCATACTGGCCTGTGCCC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGCTGGCTGTTTCTCCTaGGTATTACTGTGCCCTGGC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTAGCFS*VLLCPG
Trigger: GCCAGGGCACAGTAATACTCAGGAGAAACAGCCAGC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCACTGTTGTGCCCAGTaGTTGATAACGGGGCACAGG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTHCCAQ*LITGHR
Trigger: CCTGTGCCCCGTTATCAATCACTGGGCACAACAGTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTCACCAGGATTTTCCTaGGGTTGCTCAGCTCCCGCT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSPGFS*GCSAPA
Trigger: AGCGGGAGCTGAGCAACCGCAGGAAAATCCTGGTGA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp GAGGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACATACCGTCTGCTGCCTaGTGGACCTCTTCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: EDSFPHHISGQASVEAEDIPSAA*WTSSAC
Trigger: GCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGTAT...GTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTGGCAGTTGCTGTCCTaGGGCAGGTTTTTCACCAGG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTWQLLS*GRFFTR
Trigger: CCTGGTGAAAAACCTGCCCCAGGACAGCAACTGCCA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCTCGTGCGCTTCGGCTaGGGGGCCCTGCCCGCGCAG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLVRFG*GALPAQ
Trigger: CTGCGCGGGCAGGGCCCCTCAGCCGAAGCGCACGAG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp GAGGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACGGACTTTGCTGCCCTTaGTGGTCATACCGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: EDSFPHHISGQASVEAEDGLCCP*WSYRLL
Trigger: CAGCAGACGGTATGACCATCAAGGGCAGCAAAGTCC...GTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCTGTGCATCACACGTTaGGCCGCTATCAATGCTGCT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTLCITR*AAINAA
Trigger: AGCAGCATTGATAGCGGCTCAACGTGTGATGCACAG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAGATGTGGCAAGCTGTaGGGTGTTCCAAGAACGGCT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTRCGKL*GVPRTA
Trigger: AGCCGTTCTTGGAACACCTCACAGCTTGCCACATCT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGTCAACACATTCCACTaGACCACCTTCTGGGGCAGA +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTVNTFH*TTFWGR
Trigger: TCTGCCCCAGAAGGTGGTTCAGTGGAATGTGTTGAC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGAACTTCCTGGCAGTTaGTGTCCTGGGGCAGGTTTT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTELPGS*CPGAGF
Trigger: AAAACCTGCCCCAGGACAGCAACTGCCAGGAAGTTC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCCTTTTGGCTGGCTTTaGTGCTGCTTATGGTGTCCC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTPFGWL*CCLWCP
Trigger: GGGACACCATAAGCAGCAGCAAAGCCAGCCAAAAGG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp GAGGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACAGATGTGGCAAGCTGTaGGGTGTTCCAAGAACGGCT +
Preference number: 4 (lower is better)
Translates to: EDSFPHHISGQASVEAEDRCGKL*GVPRTA
Trigger: AGCCGTTCTTGGAACACCTCACAGCTTGCCACATCT...GTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCTTAGAGGCAGCCCCTaGACTTATCTCTGTGCCTTT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTLRGSP*TYLCAF
Trigger: AAAGGCACAGAGATAAGTTCAGGGGCTGCCTCTAAG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCCCAAGAGTGAAGTTTaGTTCTTAGAGGCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTPKSEV*FLEAAP
Trigger: AGGGGCTGCCTCTAAGAATCAAACTTCACTCTTGGG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTATGCTCCTGTGCCCTaGGAATGCTGGTCAACACAT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTYAPVP*ECWSTH
Trigger: ATGTGTTGACCAGCATTCTCAGGGCACAGGAGCATA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGCGACCTCCTCAGGGTaGAGCGCGGCGGGCATCGGG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLATSSG*SAAGIG
Trigger: CCCGATGCCCGCCGCGCTGCACCCTGAGGAGGTCGC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCAGCCTGCTCCGCAGTaGTATATTCAACCACTGCAA +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTQPAPQ*YIQPLQ
Trigger: TTGCAGTGGTTGAATATAGCACTGCGGAGCAGGCTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTGGACCTCTTCAGCCTaGTCCGCAGTGCTATATTCA +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTWTSSA*SAVLYS
Trigger: TGAATATAGCACTGCGGAGCAGGCTGAAGAGGTCCA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGCACAGAAGGAAACCTaGACTTTGCTGCCCTTGATG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTAQKET*TLLPLM
Trigger: CATCAAGGGCAGCAAAGTCCAGGTTTCCTTCTGTGC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCATTCCCACCGTGGCTaGCTGTTTCTCCTGAGTATT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTHSHRG*LFLLSI
Trigger: AATACTCAGGAGAAACAGCCAGCCACGGTGGGAATG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCTTTGCTGCTGCTTATaGTGTCCCACCAGCAAGCTT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTLCCCL*CPTSKL
Trigger: AAGCTTGCTGGTGGGACACCATAAGCAGCAGCAAAG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTCTGTGCCTTTTGGCTaGCTTTGCTGCTGCTTATGG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSVPFG*LCCCLW
Trigger: CCATAAGCAGCAGCAAAGCCAGCCAAAAGGCACAGA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTATAAGGCTGCGACCCTaGGAAATTTCCTTCTGCCAT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTIRLRP*EISFCH
Trigger: ATGGCAGAAGGAAATTTCTCAGGGTCGCAGCCTTAT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTACTTCCCTGAGAGATTaGATCCAGAATGCTGCTTGC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTTSLRD*IQNAAC
Trigger: GCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp GAGGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACGCACAGAAGGAAACCTaGACTTTGCTGCCCTTGATG +
Preference number: 4 (lower is better)
Translates to: EDSFPHHISGQASVEAEDAQKET*TLLPLM
Trigger: CATCAAGGGCAGCAAAGTCCAGGTTTCCTTCTGTGC...GTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTGTTCCAAGAACGGCTaGTTTAACAGCTCGTCCACA +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTCSKNG*FNSSST
Trigger: TGTGGACGAGCTGTTAAACCAGCCGTTCTTGGAACA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTGGATTCATCAGATGTaGCAAGCTGTGAGGTGTTCC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTWIHQM*QAVRCS
Trigger: GGAACACCTCACAGCTTGCCACATCTGATGAATCCA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGGAAGTAAGCCCTTTTaGTTACTGTGCATCACACGT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTGSKPF*LLCITR
Trigger: ACGTGTGATGCACAGTAATCAAAAGGGCTTACTTCC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTGGTTCTCCCAAGAGTaGAGTTTGATTCTTAGAGGC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTWFSQE*SLILRG
Trigger: GCCTCTAAGAATCAAACTTCACTCTTGGGAGAACCA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTTCCAATGCGTGTTGTaGTTCACTTCCCTGAGAGAT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTFQCVL*FTSLRD
Trigger: ATCTCTCAGGGAAGTGAATCACAACACGCATTGGAA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTATGAAACATCTGAATTaGGTTCTGGGCTTGTTCCCC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTMKHLN*VLGLFP
Trigger: GGGGAACAAGCCCAGAACGCAATTCAGATGTTTCAT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGGCTGTAGAAGAACTTaGAACATGGCAGGGTTGTTT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTGCRRT*NMAGLF
Trigger: AAACAACCCTGCCATGTTGCAAGTTCTTCTACAGCC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp GAGGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACACTTCCCTGAGAGATTaGATCCAGAATGCTGCTTGC +
Preference number: 4 (lower is better)
Translates to: EDSFPHHISGQASVEAEDTSLRD*IQNAAC
Trigger: GCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT...GTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTACTTCTTCACTGTTGTaGCCAGTGATTGATAACGGG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTTSSLL*PVIDNG
Trigger: CCCGTTATCAATCACTGGGCACAACAGTGAAGAAGT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTCATCCTGTGCAAGCTaGCAAAACACAGGTTTATGG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSSCAS*QNTGLW
Trigger: CCATAAACCTGTGTTTTGCCAGCTTGCACAGGATGA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTGCAGGAGAGATGGATaGATTCATCAGATGTGGCAA +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTCRRDG*IHQMWQ
Trigger: TTGCCACATCTGATGAATCCATCCATCTCTCCTGCA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTCCAGCAGCAAGGTTTaGAAAGCTCTGAAGATAAGG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSSSKV*KALKIR
Trigger: CCTTATCTTCAGAGCTTTCCAAACCTTGCTGCTGGA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp GGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACATCTGGGCAAGCAAGTGTaGAGGCAGAAGACATACAGT +
Preference number: 4 (lower is better)
Translates to: GFISPPYLWASKCGGRRHLGKQV*RQKTYS
Trigger: ACTGTATGTCTTCTGCCTCCACACTTGCTTGCCCAG...ATGTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCAAAGGCACTTAGAATaGATGAGCTCTGAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTQRHLE*MSSEAN
Trigger: ATTGGCTTCAGAGCTCATTCATTCTAAGTGCCTTTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGCTGTTATCGTTGTTTaGGTTGGAATCAGGCTAGAT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTAVIVV*VGIRLD
Trigger: ATCTAGCCTGATTCCAACTCAAACAACGATAACAGC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTGCTCAGCTCCCGCTaGATCCGCTGCAGTCGCGCG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLLSSR*IRCSRA
Trigger: CGCGCGACTGCAGCGGATGCAGCGGGAGCTGAGCAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCTCCAGTCTAGCCTTTaGAGCAAAGTCCTTTTTCAT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTLQSSL*SKVLFH
Trigger: ATGAAAAAGGACTTTGCTGCAAAGGCTAGACTGGAG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGCTATATTCAACCACTaGAAAGCCACCAACGTAACT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTAIFNH*KATNVT
Trigger: AGTTACGTTGGTGGCTTTGCAGTGGTTGAATATAGC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp ACTTCCCTGAGAGATTGCATCCAGAATGCTGCTTGCAATTCCAGTCTTATGAAGGATGGTCATACCGTCTaGTGCCTGCTGGACCTCTTC +
Preference number: 4 (lower is better)
Translates to: TSLRDCIQNAACNSSLMKDGHTV*CLLDLF
Trigger: GAAGAGGTCCAGCAGGCAGCAGACGGTATGACCATC...CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGAAAGAATGGTAACATaGCCATTCCAGCTGTTATCG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTERMVT*PFQLLS
Trigger: CGATAACAGCTGGAATGGGCATGTTACCATTCTTTC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAGTTTCCATGTAATATaGTCCTGTGCCCTGAGAATG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSFHVI*SCALRM
Trigger: CATTCTCAGGGCACAGGAGCATATTACATGGAAACT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAGCACATTTGGTACTTaGACCCTTGTAGTTCTAGGA +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSTFGT*TLVVLG
Trigger: TCCTAGAACTACAAGGGTGCAAGTACCAAATGTGCT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTATGATAAGCACACACTaGGCAACACACTTGCCAAAT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTMISTH*ATHLPN
Trigger: ATTTGGCAAGTGTGTTGCCCAGTGTGTGCTTATCAT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCAGTCTTATGAAGAGTaGTTTTACTTGCAGGGGATG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTQSYEE*FYLQGM
Trigger: CATCCCCTGCAAGTAAAACCACTCTTCATAAGACTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGATATATATTCAGCTTACACCACTAAGAGTAAGCTGAAGAAGGGCCAAAGCGGTCATACCGTCTGCTaGCTGCTGGACCTCTTCAGC +
Preference number: 4 (lower is better)
Translates to: HDIYSAYTTKSKLKKGQSGHTVC*LLDLFS
Trigger: GCTGAAGAGGTCCAGCAGGCAGCAGACGGTATGACC...GCTTTGGCCCTTCTTCAGCTTACTCTTAGTGGTGTAAGCTGAATATATATCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTACTGGGCAACACACTTaGCAAATTCAAGTATGGATT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTTGQHT*QIQVWI
Trigger: AATCCATACTTGAATTTGGCAAGTGTGTTGCCCAGT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTATCCAGAATGCTGCTTaGAATTCCAGTCTTATGAAG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTIQNAA*NSSLMK
Trigger: CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGAT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGTGGAGAATAAGCAATaGACTTTTCCAATGCGTGTT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTVENKQ*TFPMRV
Trigger: AACACGCATTGGAAAAGTGCATTGCTTATTCTCCAC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAAACACCACTTGATTTaGACTTCTTCACTGTTGTGC +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTKHHLI*TSSLLC
Trigger: GCACAACAGTGAAGAAGTGCAAATCAAGTGGTGTTT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAAAATGCAGGAGAGATaGATGGATTCATCAGATGTG +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTKMQER*MDSSDV
Trigger: CACATCTGATGAATCCATCCATCTCTCCTGCATTTT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAGTATTACCCATAACTaGGCTCTGATGTGCTTTATT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSITHN*ALMCFI
Trigger: AATAAAGCACATCAGAGCTCAGTTATGGGTAATACT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000294428.7
CDS-3UTR TCA 90 bp ATTCAAGTATGGATTTTTACTGAGCCGAATTTCTTTTGGTGGTTCTCCCAAGAGATCCCTAGTGCAGTCTaGAGTACCACAGCTGGGGGC +
Preference number: 4 (lower is better)
Translates to: IQVWIFTEPNFFWWFSQEIPSAV*STTAGG
Trigger: GCCCCCAGCTGTGGTACTTCAGACTGCACTAGGGAT...CTCTTGGGAGAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp GAGGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACTTCTCCATGTGTGAATaGGAAAGTCTTTCCATGGAT +
Preference number: 4 (lower is better)
Translates to: EDSFPHHISGQASVEAEDFSMCE*ESLSMD
Trigger: ATCCATGGAAAGACTTTCTCATTCACACATGGAGAA...GTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp CTAAGTTTATTAGGGATGGGTCAGGCAAACACAAAGCTGCTCCAGGGAAATCAACAGCCTGCTCCGCAGTaGTATATTCAACCACTGCAA +
Preference number: 4 (lower is better)
Translates to: LSLLGMGQANTKLLQGNQQPAPQ*YIQPLQ
Trigger: TTGCAGTGGTTGAATATAGCACTGCGGAGCAGGCTG...TTGATTTCCCTGGAGCAGCTTTGTGTTTGCCTGACCCATCCCTAATAAACTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGAAGAACTTGCAACATaGCAGGGTTGTTTAAACTTT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTEELAT*QGCLNF
Trigger: AAAGTTTAAACAACCCTGCCATGTTGCAAGTTCTTC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TACTGTCACCTAATTACATCATCTACCCAACCCATATTTTTCCGTCTTGTCCCATCCCCACCATATCTCTaGGCAAGCAAGTGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: YCHLITSSTQPIFFRLVPSPPYL*ASKCGG
Trigger: GCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGA...TGGGACAAGACGGAAAAATATGGGTTGGGTAGATGATGTAATTAGGTGACAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR CAA 72 bp ACAAACAAACACCACTTGATTTGCACTTCTTCACTGTaGTGCCCAGTGATTGATAACGGGGCACAGGCCAGT +
Preference number: 4 (lower is better)
Translates to: TNKHHLICTSSL*CPVIDNGAQAS
Trigger: ACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAACAGTGAAGAAGTGCAAATCAAGTGGTGTTTGTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTATCCCTAGTGCAGTCTaGAGTACCACAGCTGGGGGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLIPSAV*STTAGG
Trigger: GCCCCCAGCTGTGGTACTTCAGACTGCACTAGGGAT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTATACCGTCTGCTGCCTaGTGGACCTCTTCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLIPSAA*WTSSAC
Trigger: GCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGTAT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGGTCATACCGTCTGCTaGCTGCTGGACCTCTTCAGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLGHTVC*LLDLFS
Trigger: GCTGAAGAGGTCCAGCAGGCAGCAGACGGTATGACC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGGCTGGCTTTGCTGCTaGTTATGGTGTCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLGWLCC*LWCPTS
Trigger: GCTGGTGGGACACCATAAGCAGCAGCAAAGCCAGCC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp ACTTCCCTGAGAGATTGCATCCAGAATGCTGCTTGCAATTCCAGTCTTATGAAGTGTTCCAAGAACGGCTaGTTTAACAGCTCGTCCACA +
Preference number: 4 (lower is better)
Translates to: TSLRDCIQNAACNSSLMKCSKNG*FNSSST
Trigger: TGTGGACGAGCTGTTAAACCAGCCGTTCTTGGAACA...CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTATCGTTGTTTGAGTTaGAATCAGGCTAGATGTTTT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTYRCLS*NQARCF
Trigger: AAAACATCTAGCCTGATTCCAACTCAAACAACGATA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCTGCCATTCCCACCGTaGCTGGCTGTTTCTCCTGAG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLPFPP*LAVSPE
Trigger: CTCAGGAGAAACAGCCAGCCACGGTGGGAATGGCAG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTATAATCACCAAAAGGTaGAGAATAAGCAATGCACTT +
Preference number: 4 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTIITKR*RISNAL
Trigger: AAGTGCATTGCTTATTCTCCACCTTTTGGTGATTAT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGGGCACAGGCCAGTATaGATGGCATGTCCACTGTGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLGHRPV*MACPLC
Trigger: GCACAGTGGACATGCCATCCATACTGGCCTGTGCCC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR CAA 72 bp GCGGGTGGTAGACCAAATGTGGACCCAGGGTGTAGTTaGCCAAACCCTTTTATTAGATCACCAAAGTTACTT +
Preference number: 4 (lower is better)
Translates to: AGGRPNVDPGCS*PNPFIRSPKLL
Trigger: AAGTAACTTTGGTGATCTAATAAAAGGGTTTGGCAAACTACACCCTGGGTCCACATTTGGTCTACCACCCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGGACTTTGCTGCCCTTaGTGGTCATACCGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLGLCCP*WSYRLL
Trigger: CAGCAGACGGTATGACCATCAAGGGCAGCAAAGTCC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCACCACTGTGCATCACACGTTaGGCCGCTATCAATGCTGCT +
Preference number: 4 (lower is better)
Translates to: HIVSTVITQLFYYSMTAPLCITR*AAINAA
Trigger: AGCAGCATTGATAGCGGCTCAACGTGTGATGCACAG...TGGTGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGCTGGCTGTTTCTCCTaGGTATTACTGTGCCCTGGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLAGCFS*VLLCPG
Trigger: GCCAGGGCACAGTAATACTCAGGAGAAACAGCCAGC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp ACTTCCCTGAGAGATTGCATCCAGAATGCTGCTTGCAATTCCAGTCTTATGAAGTGTGATTCACTTCCCTaGGAGATTGCATCCAGAATG +
Preference number: 4 (lower is better)
Translates to: TSLRDCIQNAACNSSLMKCDSLP*EIASRM
Trigger: CATTCTGGATGCAATCTCTCAGGGAAGTGAATCACA...CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp GGCCACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCATGTCAAAGGAGACACTaGACAGTGCAGGGAGGATTC +
Preference number: 4 (lower is better)
Translates to: GHIVSTVITQLFYYSMTACQRRH*TVQGGF
Trigger: GAATCCTCCCTGCACTGTTCAGTGTCTCCTTTGACA...TGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp CAGAACCTGGGAATTATTTACCTGTGCATAATCACCAAAAGGTGGAGAATAAGCTGGACCTCTTCAGCCTaGTCCGCAGTGCTATATTCA +
Preference number: 4 (lower is better)
Translates to: QNLGIIYLCIITKRWRISWTSSA*SAVLYS
Trigger: TGAATATAGCACTGCGGAGCAGGCTGAAGAGGTCCA...GCTTATTCTCCACCTTTTGGTGATTATGCACAGGTAAATAATTCCCAGGTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGATGGTCATACCGTCTaGTGCCTGCTGGACCTCTTC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLDGHTV*CLLDLF
Trigger: GAAGAGGTCCAGCAGGCAGCAGACGGTATGACCATC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp GGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACATGGAATTATTTACCTGTaGATAATCACCAAAAGGTGG +
Preference number: 4 (lower is better)
Translates to: GFISPPYLWASKCGGRRHGIIYL*IITKRW
Trigger: CCACCTTTTGGTGATTATGCACAGGTAAATAATTCC...ATGTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp ACTTCCCTGAGAGATTGCATCCAGAATGCTGCTTGCAATTCCAGTCTTATGAAGAGGCAAACACAAAGCTaGTCCAGGGAAATCAAAGTG +
Preference number: 4 (lower is better)
Translates to: TSLRDCIQNAACNSSLMKRQTQS*SREIKV
Trigger: CACTTTGATTTCCCTGGAGCAGCTTTGTGTTTGCCT...CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTGGCAGTTGCTGTCCTaGGGCAGGTTTTTCACCAGG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLWQLLS*GRFFTR
Trigger: CCTGGTGAAAAACCTGCCCCAGGACAGCAACTGCCA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp GGCCACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCAGCTCGTCCACATAACTaGGGCTGTAGAAGAACTTGC +
Preference number: 4 (lower is better)
Translates to: GHIVSTVITQLFYYSMTAARPHN*GCRRTC
Trigger: GCAAGTTCTTCTACAGCCCCAGTTATGTGGACGAGC...TGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp ACTTCCCTGAGAGATTGCATCCAGAATGCTGCTTGCAATTCCAGTCTTATGAAGCCAGGGAAATCAAAGTaGAGACAAGACTCCAACGAA +
Preference number: 4 (lower is better)
Translates to: TSLRDCIQNAACNSSLMKPGKSK*RQDSNE
Trigger: TTCGTTGGAGTCTTGTCTCCACTTTGATTTCCCTGG...CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAGATGTGGCAAGCTGTaGGGTGTTCCAAGAACGGCT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLRCGKL*GVPRTA
Trigger: AGCCGTTCTTGGAACACCTCACAGCTTGCCACATCT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGTCAACACATTCCACTaGACCACCTTCTGGGGCAGA +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLVNTFH*TTFWGR
Trigger: TCTGCCCCAGAAGGTGGTTCAGTGGAATGTGTTGAC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp ACTTCCCTGAGAGATTGCATCCAGAATGCTGCTTGCAATTCCAGTCTTATGAAGTCTTGTGGACTCTTATaGTTCCATAATCACACAGGG +
Preference number: 4 (lower is better)
Translates to: TSLRDCIQNAACNSSLMKSCGLL*FHNHTG
Trigger: CCCTGTGTGATTATGGAATCATAAGAGTCCACAAGA...CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGAACTTCCTGGCAGTTaGTGTCCTGGGGCAGGTTTT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLELPGS*CPGAGF
Trigger: AAAACCTGCCCCAGGACAGCAACTGCCAGGAAGTTC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTTGGCTGGCTTTGCTaGTGCTTATGGTGTCCCACC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLFGWLC*CLWCPT
Trigger: GGTGGGACACCATAAGCAGCAGCAAAGCCAGCCAAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCCTTTTGGCTGGCTTTaGTGCTGCTTATGGTGTCCC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLPFGWL*CCLWCP
Trigger: GGGACACCATAAGCAGCAGCAAAGCCAGCCAAAAGG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp ATTCAAGTATGGATTTTTACTGAGCCGAATTTCTTTTGGTGGTTCTCCCAAGAGGGAGACACTGAACAGTaGAGGGAGGATTCATTTCCC +
Preference number: 4 (lower is better)
Translates to: IQVWIFTEPNFFWWFSQEGDTEQ*REDSFP
Trigger: GGGAAATGAATCCTCCCTGCACTGTTCAGTGTCTCC...CTCTTGGGAGAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp GGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACATATAATCACCAAAAGGTaGAGAATAAGCAATGCACTT +
Preference number: 4 (lower is better)
Translates to: GFISPPYLWASKCGGRRHIITKR*RISNAL
Trigger: AAGTGCATTGCTTATTCTCCACCTTTTGGTGATTAT...ATGTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
3UTR CAA 72 bp TTTCCAATGCGTGTTGTGATTCACTTCCCTGAGAGATaGCATCCAGAATGCTGCTTGCAATTCCAGTCTTAT +
Preference number: 4 (lower is better)
Translates to: FPMRVVIHFPER*HPECCLQFQSY
Trigger: ATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTGAATCACAACACGCATTGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTGTGCAAAGAGTGCTaGTGCTCCCAACTGTCTACC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLCKEC*CSQLST
Trigger: GGTAGACAGTTGGGAGCATCAGCACTCTTTGCACAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTGCAACAGCTCTTCTaGATCCCTGTAGTCACTGGG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLQQLF*IPVVTG
Trigger: CCCAGTGACTACAGGGATTCAGAAGAGCTGTTGCAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCTTAGAGGCAGCCCCTaGACTTATCTCTGTGCCTTT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLRGSP*TYLCAF
Trigger: AAAGGCACAGAGATAAGTTCAGGGGCTGCCTCTAAG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCCCAAGAGTGAAGTTTaGTTCTTAGAGGCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLPKSEV*FLEAAP
Trigger: AGGGGCTGCCTCTAAGAATCAAACTTCACTCTTGGG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGATATATATTCAGCTTACACCACTAAGAGTAAGCTGAAGAAGGGCCAAAGCTGGTTCTCCCAAGAGTaGAGTTTGATTCTTAGAGGC +
Preference number: 4 (lower is better)
Translates to: HDIYSAYTTKSKLKKGQSWFSQE*SLILRG
Trigger: GCCTCTAAGAATCAAACTTCACTCTTGGGAGAACCA...GCTTTGGCCCTTCTTCAGCTTACTCTTAGTGGTGTAAGCTGAATATATATCATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTATGCTCCTGTGCCCTaGGAATGCTGGTCAACACAT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLYAPVP*ECWSTH
Trigger: ATGTGTTGACCAGCATTCTCAGGGCACAGGAGCATA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCAGCCTGCTCCGCAGTaGTATATTCAACCACTGCAA +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLQPAPQ*YIQPLQ
Trigger: TTGCAGTGGTTGAATATAGCACTGCGGAGCAGGCTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTGGACCTCTTCAGCCTaGTCCGCAGTGCTATATTCA +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLWTSSA*SAVLYS
Trigger: TGAATATAGCACTGCGGAGCAGGCTGAAGAGGTCCA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CAGAACCTGGGAATTATTTACCTGTGCATAATCACCAAAAGGTGGAGAATAAGCGGCTGTAGAAGAACTTaGAACATGGCAGGGTTGTTT +
Preference number: 4 (lower is better)
Translates to: QNLGIIYLCIITKRWRISGCRRT*NMAGLF
Trigger: AAACAACCCTGCCATGTTGCAAGTTCTTCTACAGCC...GCTTATTCTCCACCTTTTGGTGATTATGCACAGGTAAATAATTCCCAGGTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp CATGATATATATTCAGCTTACACCACTAAGAGTAAGCTGAAGAAGGGCCAAAGCGAGGCAGCTTTTATGTaGTTCTCCATGATGATGTCC +
Preference number: 4 (lower is better)
Translates to: HDIYSAYTTKSKLKKGQSEAAFM*FSMMMS
Trigger: GGACATCATCATGGAGAAGCACATAAAAGCTGCCTC...GCTTTGGCCCTTCTTCAGCTTACTCTTAGTGGTGTAAGCTGAATATATATCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGCACAGAAGGAAACCTaGACTTTGCTGCCCTTGATG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLAQKET*TLLPLM
Trigger: CATCAAGGGCAGCAAAGTCCAGGTTTCCTTCTGTGC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGCTCGTCCACATAACTaGGGCTGTAGAAGAACTTGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLARPHN*GCRRTC
Trigger: GCAAGTTCTTCTACAGCCCCAGTTATGTGGACGAGC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCACCATGGATTCATCAGATGTaGCAAGCTGTGAGGTGTTCC +
Preference number: 4 (lower is better)
Translates to: HIVSTVITQLFYYSMTAPWIHQM*QAVRCS
Trigger: GGAACACCTCACAGCTTGCCACATCTGATGAATCCA...TGGTGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCATTCCCACCGTGGCTaGCTGTTTCTCCTGAGTATT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLHSHRG*LFLLSI
Trigger: AATACTCAGGAGAAACAGCCAGCCACGGTGGGAATG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCTTTGCTGCTGCTTATaGTGTCCCACCAGCAAGCTT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLCCCL*CPTSKL
Trigger: AAGCTTGCTGGTGGGACACCATAAGCAGCAGCAAAG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGTGGTAGACCAAATGTaGACCCAGGGTGTAGTTTGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLVVDQM*TQGVVC
Trigger: GCAAACTACACCCTGGGTCCACATTTGGTCTACCAC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTACAGGCCAGTATGGATaGCATGTCCACTGTGCTGTA +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLTGQYG*HVHCAV
Trigger: TACAGCACAGTGGACATGCCATCCATACTGGCCTGT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR CAA 72 bp ATTCACTTCCCTGAGAGATTGCATCCAGAATGCTGCTaGCAATTCCAGTCTTATGAAGAGTGGTTTTACTTG +
Preference number: 4 (lower is better)
Translates to: IHFPERLHPECC*QFQSYEEWFYL
Trigger: CAAGTAAAACCACTCTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCAGACAACACGTAAATaGATGAGCATGGCAACGTCC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLQTTRK*MSMATS
Trigger: GGACGTTGCCATGCTCATTCATTTACGTGTTGTCTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCAAAAAGCCCCGGATTaGGATCCCAAATTCCCTATC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLQKAPD*DPKFPI
Trigger: GATAGGGAATTTGGGATCTCAATCCGGGGCTTTTTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCCTGCTTTGACTGACTaGCTTTTTGCAGCTCTGTTG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLPALTD*LFAALL
Trigger: CAACAGAGCTGCAAAAAGTCAGTCAGTCAAAGCAGG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp GGCCACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCACCCAAGAGTGAAGTTTaGTTCTTAGAGGCAGCTTTT +
Preference number: 4 (lower is better)
Translates to: GHIVSTVITQLFYYSMTAPKSEV*FLEAAF
Trigger: AAAAGCTGCCTCTAAGAATCAAACTTCACTCTTGGG...TGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTGGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp GGCCACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCAGCTATATTCAACCACTaGAAAGCCACCAACGTAACT +
Preference number: 4 (lower is better)
Translates to: GHIVSTVITQLFYYSMTAAIFNH*KATNVT
Trigger: AGTTACGTTGGTGGCTTTGCAGTGGTTGAATATAGC...TGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTGGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp ATTCAAGTATGGATTTTTACTGAGCCGAATTTCTTTTGGTGGTTCTCCCAAGAGTGCAGGAGAGATGGATaGATTCATCAGATGTGGCAA +
Preference number: 4 (lower is better)
Translates to: IQVWIFTEPNFFWWFSQECRRDG*IHQMWQ
Trigger: TTGCCACATCTGATGAATCCATCCATCTCTCCTGCA...CTCTTGGGAGAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp GGCCACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCACAGTCTTATGAAGAGTaGTTTTACTTGCAGGGGATG +
Preference number: 4 (lower is better)
Translates to: GHIVSTVITQLFYYSMTAQSYEE*FYLQGM
Trigger: CATCCCCTGCAAGTAAAACCACTCTTCATAAGACTG...TGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTGGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp ACTTCCCTGAGAGATTGCATCCAGAATGCTGCTTGCAATTCCAGTCTTATGAAGAGTATCATCAGAACCTaGGAATTATTTACCTGTGCA +
Preference number: 4 (lower is better)
Translates to: TSLRDCIQNAACNSSLMKSIIRT*ELFTCA
Trigger: TGCACAGGTAAATAATTCCCAGGTTCTGATGATACT...CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp CTTGCCAAATTCAAGTATGGATTTTTACTGAGCCGAATTTCTTTTGGTGGTTCTGGAAGTAAGCCCTTTTaGTTACTGTGCATCACACGT +
Preference number: 4 (lower is better)
Translates to: LAKFKYGFLLSRISFGGSGSKPF*LLCITR
Trigger: ACGTGTGATGCACAGTAATCAAAAGGGCTTACTTCC...AGAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAATTTGGCAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTGGTTCTCCCAAGAGTaGAGTTTGATTCTTAGAGGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLWFSQE*SLILRG
Trigger: GCCTCTAAGAATCAAACTTCACTCTTGGGAGAACCA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTGTGATTCACTTCCCTaGGAGATTGCATCCAGAATG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLCDSLP*EIASRM
Trigger: CATTCTGGATGCAATCTCTCAGGGAAGTGAATCACA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGTCTACGCTATGAAATaGGCACAGAAACCCATGTTC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLVYAMK*AQKPMF
Trigger: GAACATGGGTTTCTGTGCTCATTTCATAGCGTAGAC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTACTATAGTGGAGGTGTaGCTAAGCATTGAAGAGGCT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLTIVEV*LSIEEA
Trigger: AGCCTCTTCAATGCTTAGTCACACCTCCACTATAGT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTCTTCCTGCTTTGACTaGCTGACTTTTTGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLSSCFD*LTFCSS
Trigger: AGAGCTGCAAAAAGTCAGTCAGTCAAAGCAGGAAGA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TACTGTCACCTAATTACATCATCTACCCAACCCATATTTTTCCGTCTTGTCCCACACACAGGGCTAACATaGTATATATTCAGCTTACAC +
Preference number: 4 (lower is better)
Translates to: YCHLITSSTQPIFFRLVPHTGLT*YIFSLH
Trigger: GTGTAAGCTGAATATATATCATGTTAGCCCTGTGTG...TGGGACAAGACGGAAAAATATGGGTTGGGTAGATGATGTAATTAGGTGACAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTATGAAACATCTGAATTaGGTTCTGGGCTTGTTCCCC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLMKHLN*VLGLFP
Trigger: GGGGAACAAGCCCAGAACGCAATTCAGATGTTTCAT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGGCTGTAGAAGAACTTaGAACATGGCAGGGTTGTTT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLGCRRT*NMAGLF
Trigger: AAACAACCCTGCCATGTTGCAAGTTCTTCTACAGCC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CAGAACCTGGGAATTATTTACCTGTGCATAATCACCAAAAGGTGGAGAATAAGCATCCAGAATGCTGCTTaGAATTCCAGTCTTATGAAG +
Preference number: 4 (lower is better)
Translates to: QNLGIIYLCIITKRWRISIQNAA*NSSLMK
Trigger: CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGAT...GCTTATTCTCCACCTTTTGGTGATTATGCACAGGTAAATAATTCCCAGGTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTGTAATATGCTCCTGTaGCCTGAGAATGCTGGTCAA +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLCNMLL*PENAGQ
Trigger: TTGACCAGCATTCTCAGGGCACAGGAGCATATTACA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTACTTCTTCACTGTTGTaGCCAGTGATTGATAACGGG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLTSSLL*PVIDNG
Trigger: CCCGTTATCAATCACTGGGCACAACAGTGAAGAAGT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTCATCCTGTGCAAGCTaGCAAAACACAGGTTTATGG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLSSCAS*QNTGLW
Trigger: CCATAAACCTGTGTTTTGCCAGCTTGCACAGGATGA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTGCAGGAGAGATGGATaGATTCATCAGATGTGGCAA +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLCRRDG*IHQMWQ
Trigger: TTGCCACATCTGATGAATCCATCCATCTCTCCTGCA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTCCAGCAGCAAGGTTTaGAAAGCTCTGAAGATAAGG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLSSSKV*KALKIR
Trigger: CCTTATCTTCAGAGCTTTCCAAACCTTGCTGCTGGA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCACCAATGATAAGCACACACTaGGCAACACACTTGCCAAAT +
Preference number: 4 (lower is better)
Translates to: HIVSTVITQLFYYSMTAPMISTH*ATHLPN
Trigger: ATTTGGCAAGTGTGTTGCCCAGTGTGTGCTTATCAT...TGGTGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAATGCAACAGGAAAATaGGAAAGAGAAGTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLNATGK*EREVQG
Trigger: GCCCTGCACTTCTCTTTCCCATTTTCCTGTTGCATT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCAAAGGCACTTAGAATaGATGAGCTCTGAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLQRHLE*MSSEAN
Trigger: ATTGGCTTCAGAGCTCATTCATTCTAAGTGCCTTTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGAAAGAATGGTAACATaGCCATTCCAGCTGTTATCG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLERMVT*PFQLLS
Trigger: CGATAACAGCTGGAATGGGCATGTTACCATTCTTTC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAGATTGCATCCAGAATaGTGCTTGCAATTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLRLHPE*CLQFQS
Trigger: AGACTGGAATTGCAAGCAGCATTCTGGATGCAATCT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCACCAGTGGAGAATAAGCAATaGACTTTTCCAATGCGTGTT +
Preference number: 4 (lower is better)
Translates to: HIVSTVITQLFYYSMTAPVENKQ*TFPMRV
Trigger: AACACGCATTGGAAAAGTGCATTGCTTATTCTCCAC...TGGTGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp TACAATACAAATTTATTTACAAAACCAGGTGGTGGGCTAGATTTGTTCTATGGGTTTTATGAACAAGCGTaGGCTAGAAGCAGGGACTGT +
Preference number: 4 (lower is better)
Translates to: YNTNLFTKPGGGLDLFYGFYEQA*ARSRDC
Trigger: ACAGTCCCTGCTTCTAGCGCACGCTTGTTCATAAAA...CCCATAGAACAAATCTAGCCCACCACCTGGTTTTGTAAATAAATTTGTATTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp TACTGTCACCTAATTACATCATCTACCCAACCCATATTTTTCCGTCTTGTCCCAGAAGAACTTGCAACATaGCAGGGTTGTTTAAACTTT +
Preference number: 4 (lower is better)
Translates to: YCHLITSSTQPIFFRLVPEELAT*QGCLNF
Trigger: AAAGTTTAAACAACCCTGCCATGTTGCAAGTTCTTC...TGGGACAAGACGGAAAAATATGGGTTGGGTAGATGATGTAATTAGGTGACAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTATGATAAGCACACACTaGGCAACACACTTGCCAAAT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLMISTH*ATHLPN
Trigger: ATTTGGCAAGTGTGTTGCCCAGTGTGTGCTTATCAT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTACCATCAGCACATTTaGTACTTGCACCCTTGTAGT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLYHQHI*YLHPCS
Trigger: ACTACAAGGGTGCAAGTACCAAATGTGCTGATGGTA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR CAA 72 bp AAACAACATCTTAAAGCATCGGTAGTAGTGGATACCTaGGATATCACTGTCACTCTCTTACCGGGTTTAATT +
Preference number: 4 (lower is better)
Translates to: KQHLKASVVVDT*DITVTLLPGLI
Trigger: AATTAAACCCGGTAAGAGAGTGACAGTGATATCCAAGGTATCCACTACTACCGATGCTTTAAGATGTTGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTCTTTTAACAAATCATaGACTTCCTGGCAGTTGCTG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLSFNKS*TSWQLL
Trigger: CAGCAACTGCCAGGAAGTTCATGATTTGTTAAAAGA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGCAATTCCAGTCTTATaGAGAGTGGTTTTACTTGCA +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLAIPVL*RVVLLA
Trigger: TGCAAGTAAAACCACTCTTCATAAGACTGGAATTGC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CTTGCCAAATTCAAGTATGGATTTTTACTGAGCCGAATTTCTTTTGGTGGTTCTGCAATTCCAGTCTTATaGAGAGTGGTTTTACTTGCA +
Preference number: 4 (lower is better)
Translates to: LAKFKYGFLLSRISFGGSAIPVL*RVVLLA
Trigger: TGCAAGTAAAACCACTCTTCATAAGACTGGAATTGC...AGAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAATTTGGCAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCAAACAAACACCACTTaGTTTGCACTTCTTCACTGT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLQTNTT*FALLHC
Trigger: ACAGTGAAGAAGTGCAAATCAAGTGGTGTTTGTTTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGCTAGATGTTTTATGTaGTTCTCCATGATGATGTCC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLARCFM*FSMMMS
Trigger: GGACATCATCATGGAGAAGCACATAAAACATCTAGC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTATCCAGAATGCTGCTTaGAATTCCAGTCTTATGAAG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLIQNAA*NSSLMK
Trigger: CTTCATAAGACTGGAATTGCAAGCAGCATTCTGGAT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTGCATCCAGAATGCTaGTTGCAATTCCAGTCTTAT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLHPEC*LQFQSY
Trigger: ATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp GAATGCCTTCAGACTGCAGCAATTTGTGATCACTGTTCTCTAAATATAGATATAAGATTGCATCCAGAATaGTGCTTGCAATTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: ECLQTAAICDHCSLNIDIRLHPE*CLQFQS
Trigger: AGACTGGAATTGCAAGCAGCATTCTGGATGCAATCT...TATATCTATATTTAGAGAACAGTGATCACAAATTGCTGCAGTCTGAAGGCATTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGTGGAGAATAAGCAATaGACTTTTCCAATGCGTGTT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLVENKQ*TFPMRV
Trigger: AACACGCATTGGAAAAGTGCATTGCTTATTCTCCAC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTACCCAGGGTGTAGTTTaGCAAACCCTTTTATTAGAT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLTQGVV*QTLLLD
Trigger: ATCTAATAAAAGGGTTTGGCAAACTACACCCTGGGT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTATTGAAGAGGCTGAATaGAACAGGAAAATGGGAAAG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLIEEAE*NRKMGK
Trigger: CTTTCCCATTTTCCTGTTGCATTCAGCCTCTTCAAT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAAAATGCAGGAGAGATaGATGGATTCATCAGATGTG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLKMQER*MDSSDV
Trigger: CACATCTGATGAATCCATCCATCTCTCCTGCATTTT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR CAA 72 bp GAAACTATAAACCCGTATTTAAAGGATATGGCTAGTTaGAATGAAGTTAAGGCAGCGATGAACAGCAGAGAT +
Preference number: 4 (lower is better)
Translates to: ETINPYLKDMAS*NEVKAAMNSRD
Trigger: ATCTCTGCTGTTCATCGCTGCCTTAACTTCATTCAAACTAGCCATATCCTTTAAATACGGGTTTATAGTTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAGTATGGATTTTTACTaGGCCGAATTTCTTTTGGTG +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLSMDFY*AEFLLV
Trigger: CACCAAAAGAAATTCGGCTCAGTAAAAATCCATACT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR TCA 90 bp TACAATACAAATTTATTTACAAAACCAGGTGGTGGGCTAGATTTGTTCTATGGGTTGAACCAATTTTTCTaGGTATCATCAGAACCTGGG +
Preference number: 4 (lower is better)
Translates to: YNTNLFTKPGGGLDLFYGLNQFF*VSSEPG
Trigger: CCCAGGTTCTGATGATACTCAGAAAAATTGGTTCAA...CCCATAGAACAAATCTAGCCCACCACCTGGTTTTGTAAATAAATTTGTATTGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp CTTGCCAAATTCAAGTATGGATTTTTACTGAGCCGAATTTCTTTTGGTGGTTCTGACTGCAGCAATTTGTaGTCACTGTTCTCTAAATAT +
Preference number: 4 (lower is better)
Translates to: LAKFKYGFLLSRISFGGSDCSNL*SLFSKY
Trigger: ATATTTAGAGAACAGTGATCACAAATTGCTGCAGTC...AGAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAATTTGGCAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp GAATGCCTTCAGACTGCAGCAATTTGTGATCACTGTTCTCTAAATATAGATATAACTGGGCAACACACTTaGCAAATTCAAGTATGGATT +
Preference number: 4 (lower is better)
Translates to: ECLQTAAICDHCSLNIDITGQHT*QIQVWI
Trigger: AATCCATACTTGAATTTGGCAAGTGTGTTGCCCAGT...TATATCTATATTTAGAGAACAGTGATCACAAATTGCTGCAGTCTGAAGGCATTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp TACAATACAAATTTATTTACAAAACCAGGTGGTGGGCTAGATTTGTTCTATGGGTTGCATCCAGAATGCTaGTTGCAATTCCAGTCTTAT +
Preference number: 4 (lower is better)
Translates to: YNTNLFTKPGGGLDLFYGLHPEC*LQFQSY
Trigger: ATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAA...CCCATAGAACAAATCTAGCCCACCACCTGGTTTTGTAAATAAATTTGTATTGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR GCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTTTTGCAGCTCTGTTaGAAAATTCACCATCTTTCC +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLFLQLC*KIHHLS
Trigger: GGAAAGATGGTGAATTTTGCAACAGAGCTGCAAAAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
37% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAATCCCTGTAGTCACTaGGGAGTTTATCAATACAAA +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLNPCSH*GVYQYK
Trigger: TTTGTATTGATAAACTCCCCAGTGACTACAGGGATT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp TACAATACAAATTTATTTACAAAACCAGGTGGTGGGCTAGATTTGTTCTATGGGAAAATGCAGGAGAGATaGATGGATTCATCAGATGTG +
Preference number: 4 (lower is better)
Translates to: YNTNLFTKPGGGLDLFYGKMQER*MDSSDV
Trigger: CACATCTGATGAATCCATCCATCTCTCCTGCATTTT...CCCATAGAACAAATCTAGCCCACCACCTGGTTTTGTAAATAAATTTGTATTGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR TCA 90 bp TACAATACAAATTTATTTACAAAACCAGGTGGTGGGCTAGATTTGTTCTATGGGAGTATGGATTTTTACTaGGCCGAATTTCTTTTGGTG +
Preference number: 4 (lower is better)
Translates to: YNTNLFTKPGGGLDLFYGSMDFY*AEFLLV
Trigger: CACCAAAAGAAATTCGGCTCAGTAAAAATCCATACT...CCCATAGAACAAATCTAGCCCACCACCTGGTTTTGTAAATAAATTTGTATTGTA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTATCGTTGTTTGAGTTaGAATCAGGCTAGATGTTTT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLYRCLS*NQARCF
Trigger: AAAACATCTAGCCTGATTCCAACTCAAACAACGATA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CCA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTATAATCACCAAAAGGTaGAGAATAAGCAATGCACTT +
Preference number: 4 (lower is better)
Translates to: HVEHLYNITISTFGTCTLIITKR*RISNAL
Trigger: AAGTGCATTGCTTATTCTCCACCTTTTGGTGATTAT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR CAA 72 bp GCAATTACTTCTAGGGAAAGTAAATTGAAATGCACATaGGCTTATAAGAAACTCATTCTTCTAAGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: AITSRESKLKCT*AYKKLILLRLR
Trigger: CCTGAGCCTTAGAAGAATGAGTTTCTTATAAGCCAATGTGCATTTCAATTTACTTTCCCTAGAAGTAATTGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
3UTR CAA 72 bp GTCTGTCTAAAGGCTAAAGGTCTGTCTTTAGGTGAATaGAAAGGAATAGTTGCTATTAGAATTAGTGCTATT +
Preference number: 4 (lower is better)
Translates to: VCLKAKGLSLGE*KGIVAIRISAI
Trigger: AATAGCACTAATTCTAATAGCAACTATTCCTTTCAATTCACCTAAAGACAGACCTTTAGCCTTTAGACAGAC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 90 bp AGCTCCCGCTGCATCCGCTGCAGTCGCGCGGCGACCTCCTCAGGGTaGAGCGCGGCGGGCATCGGGTCCGGGGCGCCCTCGTGCGCTTCG +
Preference number: 5 (lower is better)
Translates to: SSRCIRCSRAATSSG*SAAGIGSGAPSCAS
Trigger: CGAAGCGCACGAGGGCGCCCCGGACCCGATGCCCGCCGCGCTGCACCCTGAGGAGGTCGCCGCGCGACTGCAGCGGATGCAGCGGGAGCT
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 90 bp TTCACCAGGATTTTCCTGCGGTTGCTCAGCTCCCGCTGCATCCGCTaGAGTCGCGCGGCGACCTCCTCAGGGTGCAGCGCGGCGGGCATC +
Preference number: 5 (lower is better)
Translates to: FTRIFLRLLSSRCIR*SRAATSSGCSAAGI
Trigger: GATGCCCGCCGCGCTGCACCCTGAGGAGGTCGCCGCGCGACTGCAGCGGATGCAGCGGGAGCTGAGCAACCGCAGGAAAATCCTGGTGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 90 bp GGCAGGTTTTTCACCAGGATTTTCCTGCGGTTGCTCAGCTCCCGCTaGATCCGCTGCAGTCGCGCGGCGACCTCCTCAGGGTGCAGCGCG +
Preference number: 5 (lower is better)
Translates to: GRFFTRIFLRLLSSR*IRCSRAATSSGCSA
Trigger: CGCGCTGCACCCTGAGGAGGTCGCCGCGCGACTGCAGCGGATGCAGCGGGAGCTGAGCAACCGCAGGAAAATCCTGGTGAAAAACCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS TCA 90 bp CTGGCGCTCCAGGAGCACAGAAGGAAACCTGGACTTTGCTGCCCTTaGTGGTCATACCGTCTGCTGCCTGCTGGACCTCTTCAGCCTGCT +
Preference number: 5 (lower is better)
Translates to: LALQEHRRKPGLCCP*WSYRLLPAGPLQPA
Trigger: AGCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGTATGACCATCAAGGGCAGCAAAGTCCAGGTTTCCTTCTGTGCTCCTGGAGCGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS CCA 90 bp GCTAATGTACTTCGCCCTGGCGCTCCAGGAGCACAGAAGGAAACCTaGACTTTGCTGCCCTTGATGGTCATACCGTCTGCTGCCTGCTGG +
Preference number: 5 (lower is better)
Translates to: ANVLRPGAPGAQKET*TLLPLMVIPSAACW
Trigger: CCAGCAGGCAGCAGACGGTATGACCATCAAGGGCAGCAAAGTCCAGGTTTCCTTCTGTGCTCCTGGAGCGCCAGGGCGAAGTACATTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS CCA 90 bp ACCTGGACTTTGCTGCCCTTGATGGTCATACCGTCTGCTGCCTGCTaGACCTCTTCAGCCTGCTCCGCAGTGCTATATTCAACCACTGCA +
Preference number: 5 (lower is better)
Translates to: TWTLLPLMVIPSAAC*TSSACSAVLYSTTA
Trigger: TGCAGTGGTTGAATATAGCACTGCGGAGCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGTATGACCATCAAGGGCAGCAAAGTCCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAGGATTTTCCTGCGGTaGCTCAGCTCCCGCTGCATC +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTRIFLR*LSSRCI
Trigger: GATGCAGCGGGAGCTGAGCAACCGCAGGAAAATCCT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 90 bp GAAACCTGGACTTTGCTGCCCTTGATGGTCATACCGTCTGCTGCCTaGTGGACCTCTTCAGCCTGCTCCGCAGTGCTATATTCAACCACT +
Preference number: 5 (lower is better)
Translates to: ETWTLLPLMVIPSAA*WTSSACSAVLYSTT
Trigger: AGTGGTTGAATATAGCACTGCGGAGCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGTATGACCATCAAGGGCAGCAAAGTCCAGGTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS GCA 90 bp CTGCTGGACCTCTTCAGCCTGCTCCGCAGTGCTATATTCAACCACTaGAAAGCCACCAACGTAACTACCTTCATCCTGTGCAAGCTGGCA +
Preference number: 5 (lower is better)
Translates to: LLDLFSLLRSAIFNH*KATNVTTFILCKLA
Trigger: TGCCAGCTTGCACAGGATGAAGGTAGTTACGTTGGTGGCTTTGCAGTGGTTGAATATAGCACTGCGGAGCAGGCTGAAGAGGTCCAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTGGACTTTGCTGCCCTaGATGGTCATACCGTCTGCT +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTWTLLP*MVIPSA
Trigger: AGCAGACGGTATGACCATCAAGGGCAGCAAAGTCCA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTACTGTGCATCACACGTaGAGCCGCTATCAATGCTGC +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTTVHHT*SRYQCC
Trigger: GCAGCATTGATAGCGGCTCAACGTGTGATGCACAGT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS TCA 90 bp TCCAGCAGCAAGGTTTGGAAAGCTCTGAAGATAAGGCTGCGACCCTaGGAAATTTCCTTCTGCCATTCCCACCGTGGCTGGCTGTTTCTC +
Preference number: 5 (lower is better)
Translates to: SSSKVWKALKIRLRP*EISFCHSHRGWLFL
Trigger: GAGAAACAGCCAGCCACGGTGGGAATGGCAGAAGGAAATTTCTCAGGGTCGCAGCCTTATCTTCAGAGCTTTCCAAACCTTGCTGCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 90 bp TCATACCGTCTGCTGCCTGCTGGACCTCTTCAGCCTGCTCCGCAGTaGTATATTCAACCACTGCAAAGCCACCAACGTAACTACCTTCAT +
Preference number: 5 (lower is better)
Translates to: SYRLLPAGPLQPAPQ*YIQPLQSHQRNYLH
Trigger: ATGAAGGTAGTTACGTTGGTGGCTTTGCAGTGGTTGAATATAGCACTGCGGAGCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGTATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCACTTCCCTGAGAGATaGCATCCAGAATGCTGCTTG +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTHFPER*HPECCL
Trigger: CAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGATGAAACATCTGAATaGCGTTCTGGGCTTGTTCCC +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTDETSE*RSGLVP
Trigger: GGGAACAAGCCCAGAACGCAATTCAGATGTTTCATC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTTCCAGCTGTTATCGTaGTTTGAGTTGGAATCAGGC +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTFQLLS*FELESG
Trigger: GCCTGATTCCAACTCAAACAACGATAACAGCTGGAA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCACTGGGCAACACACTaGCCAAATTCAAGTATGGAT +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTHWATH*PNSSMD
Trigger: ATCCATACTTGAATTTGGCAAGTGTGTTGCCCAGTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTGAAGAGTGGTTTTACTaGCAGGGGATGATAAGCACA +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTEEWFY*QGMIST
Trigger: TGTGCTTATCATCCCCTGCAAGTAAAACCACTCTTC...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp GGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACATCACTTCCCTGAGAGATaGCATCCAGAATGCTGCTTG +
Preference number: 5 (lower is better)
Translates to: GFISPPYLWASKCGGRRHHFPER*HPECCL
Trigger: CAAGCAGCATTCTGGATGCAATCTCTCAGGGAAGTG...ATGTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTTGCACTTCTTCACTGTaGTGCCCAGTGATTGATAAC +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTCTSSL*CPVIDN
Trigger: GTTATCAATCACTGGGCACAACAGTGAAGAAGTGCA...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS TCA 90 bp AACTCCTTTTTCAATGGAAGCACTGACCCTATCCCTAGTGCAGTCTaGAGTACCACAGCTGGGGGCTCTCCAAGTAAGCCGGGTTTATTA +
Preference number: 5 (lower is better)
Translates to: NSFFNGSTDPIPSAV*STTAGGSPSKPGLL
Trigger: TAATAAACCCGGCTTACTTGGAGAGCCCCCAGCTGTGGTACTTCAGACTGCACTAGGGATAGGGTCAGTGCTTCCATTGAAAAAGGAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTACAACAAAGCATCTGTaGGCTGAAGCTGGACTATTA +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTTTKHL*AEAGLL
Trigger: TAATAGTCCAGCTTCAGCCAACAGATGCTTTGTTGT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAGCTGTTATCGTTGTTaGAGTTGGAATCAGGCTAGA +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTSCYRC*SWNQAR
Trigger: TCTAGCCTGATTCCAACTCAAACAACGATAACAGCT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTCAGCAATGTGCTGATTaGGAAAGAATGGTAACATGC +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTQQCAD*ERMVTC
Trigger: GCATGTTACCATTCTTTCCAAATCAGCACATTGCTG...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp GGATTCATTTCCCCACCATATCTCTGGGCAAGCAAGTGTGGAGGCAGAAGACATAACAGAGGCATTCCCTaGGGTTTCTTAGGTCTACAC +
Preference number: 5 (lower is better)
Translates to: GFISPPYLWASKCGGRRHNRGIP*GFLGLH
Trigger: GTGTAGACCTAAGAAACCCAAGGGAATGCCTCTGTT...ATGTCTTCTGCCTCCACACTTGCTTGCCCAGAGATATGGTGGGGAAATGAATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTAAAGAAATGGGCACGTaGGTAATACACAACAAAGCA +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTKEMGT*VIHNKA
Trigger: TGCTTTGTTGTGTATTACCAACGTGCCCATTTCTTT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TTGTGCCCAGTGATTGATAACGGGGCACAGGCCAGTATGGATGGCATGTCCACTACAAACAAACACCACTaGATTTGCACTTCTTCACTG +
Preference number: 5 (lower is better)
Translates to: LCPVIDNGAQASMDGMSTTNKHH*ICTSSL
Trigger: CAGTGAAGAAGTGCAAATCAAGTGGTGTTTGTTTGT...AGTGGACATGCCATCCATACTGGCCTGTGCCCCGTTATCAATCACTGGGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAGGATTTTCCTGCGGTaGCTCAGCTCCCGCTGCATC +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLRIFLR*LSSRCI
Trigger: GATGCAGCGGGAGCTGAGCAACCGCAGGAAAATCCT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TACTGTCACCTAATTACATCATCTACCCAACCCATATTTTTCCGTCTTGTCCCATGGACTTTGCTGCCCTaGATGGTCATACCGTCTGCT +
Preference number: 5 (lower is better)
Translates to: YCHLITSSTQPIFFRLVPWTLLP*MVIPSA
Trigger: AGCAGACGGTATGACCATCAAGGGCAGCAAAGTCCA...TGGGACAAGACGGAAAAATATGGGTTGGGTAGATGATGTAATTAGGTGACAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CAA 90 bp GGCCACATAGTCTCTACTGTCATCACTCAACTCTTTTATTATAGCATGACAGCAACTGTGCATCACACGTaGAGCCGCTATCAATGCTGC +
Preference number: 5 (lower is better)
Translates to: GHIVSTVITQLFYYSMTATVHHT*SRYQCC
Trigger: GCAGCATTGATAGCGGCTCAACGTGTGATGCACAGT...TGCTGTCATGCTATAATAAAAGAGTTGAGTGATGACAGTAGAGACTATGTGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS TCA 90 bp AATGCTGGTCAACACATTCCACTGAACCACCTTCTGGGGCAGAGATaGGATATGATGAGCCTCGCTTTTCATTTCTTAAAGATGACACCT +
Preference number: 5 (lower is better)
Translates to: NAGQHIPLNHLLGQR*DMMSLAFHFLKMTP
Trigger: AGGTGTCATCTTTAAGAAATGAAAAGCGAGGCTCATCATATCTCATCTCTGCCCCAGAAGGTGGTTCAGTGGAATGTGTTGACCAGCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 90 bp GCTGGTTTAACAGCTCGTCCACATAACTGGGGCTGTAGAAGAACTTaGAACATGGCAGGGTTGTTTAAACTTTTCATAATTTGTACTGGA +
Preference number: 5 (lower is better)
Translates to: AGLTARPHNWGCRRT*NMAGLFKLFIICTG
Trigger: TCCAGTACAAATTATGAAAAGTTTAAACAACCCTGCCATGTTGCAAGTTCTTCTACAGCCCCAGTTATGTGGACGAGCTGTTAAACCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS GCA 90 bp AAGATGACACCTGTGCATAATCACCAAAAGGTGGAGAATAAGCAATaGACTTTTCCAATGCGTGTTGTGATTCACTTCCCTGAGAGATTG +
Preference number: 5 (lower is better)
Translates to: KMTPVHNHQKVENKQ*TFPMRVVIHFPERL
Trigger: CAATCTCTCAGGGAAGTGAATCACAACACGCATTGGAAAAGTGCATTGCTTATTCTCCACCTTTTGGTGATTATGCACAGGTGTCATCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTACCGGGTTTAATTTaGCATGGCTGGTGTGGGCGT +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLPGLI*HGWCGR
Trigger: ACGCCCACACCAGCCATGCAAAATTAAACCCGGTAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCAGCACATTTGGTACTaGCACCCTTGTAGTTCTAGG +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLQHIWY*HPCSSR
Trigger: CCTAGAACTACAAGGGTGCAAGTACCAAATGTGCTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTCCAGCTGTTATCGTaGTTTGAGTTGGAATCAGGC +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLFQLLS*FELESG
Trigger: GCCTGATTCCAACTCAAACAACGATAACAGCTGGAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTTTCCAGCAGCAAGGTTaGGAAAGCTCTGAAGATAAG +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLFQQQG*ESSEDK
Trigger: CTTATCTTCAGAGCTTTCCAAACCTTGCTGCTGGAA...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCACTGGGCAACACACTaGCCAAATTCAAGTATGGAT +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLHWATH*PNSSMD
Trigger: ATCCATACTTGAATTTGGCAAGTGTGTTGCCCAGTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGAAGAGTGGTTTTACTaGCAGGGGATGATAAGCACA +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLEEWFY*QGMIST
Trigger: TGTGCTTATCATCCCCTGCAAGTAAAACCACTCTTC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CTTGCCAAATTCAAGTATGGATTTTTACTGAGCCGAATTTCTTTTGGTGGTTCTGAAGAGTGGTTTTACTaGCAGGGGATGATAAGCACA +
Preference number: 5 (lower is better)
Translates to: LAKFKYGFLLSRISFGGSEEWFY*QGMIST
Trigger: TGTGCTTATCATCCCCTGCAAGTAAAACCACTCTTC...AGAACCACCAAAAGAAATTCGGCTCAGTAAAAATCCATACTTGAATTTGGCAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTACAACAAAGCATCTGTaGGCTGAAGCTGGACTATTA +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLTTKHL*AEAGLL
Trigger: TAATAGTCCAGCTTCAGCCAACAGATGCTTTGTTGT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAGCTGTTATCGTTGTTaGAGTTGGAATCAGGCTAGA +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLSCYRC*SWNQAR
Trigger: TCTAGCCTGATTCCAACTCAAACAACGATAACAGCT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCAGCAATGTGCTGATTaGGAAAGAATGGTAACATGC +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLQQCAD*ERMVTC
Trigger: GCATGTTACCATTCTTTCCAAATCAGCACATTGCTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp TACAATACAAATTTATTTACAAAACCAGGTGGTGGGCTAGATTTGTTCTATGGGCACTGGGCAACACACTaGCCAAATTCAAGTATGGAT +
Preference number: 5 (lower is better)
Translates to: YNTNLFTKPGGGLDLFYGHWATH*PNSSMD
Trigger: ATCCATACTTGAATTTGGCAAGTGTGTTGCCCAGTG...CCCATAGAACAAATCTAGCCCACCACCTGGTTTTGTAAATAAATTTGTATTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCAAACACCACTTGATTaGCACTTCTTCACTGTTGTG +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLQTPLD*HFFTVV
Trigger: CACAACAGTGAAGAAGTGCAAATCAAGTGGTGTTTG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTAAAGAAATGGGCACGTaGGTAATACACAACAAAGCA +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLKEMGT*VIHNKA
Trigger: TGCTTTGTTGTGTATTACCAACGTGCCCATTTCTTT...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTCTTTTTGCAGCTCTGTaGCAAAATTCACCATCTTTC +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLLFAAL*QNSPSF
Trigger: GAAAGATGGTGAATTTTGCAACAGAGCTGCAAAAAG...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS-3UTR CAA 90 bp CATGTAGAGCATCTTTATAATATTACCATCAGCACATTTGGTACTTGCACCCTTGTAGTCCAGACACCTTaGTTTGTTTGTTTTAGTTCC +
Preference number: 5 (lower is better)
Translates to: HVEHLYNITISTFGTCTLVVQTP*FVCFSS
Trigger: GGAACTAAAACAAACAAACAAAGGTGTCTGGACTAC...AAGGGTGCAAGTACCAAATGTGCTGATGGTAATATTATAAAGATGCTCTACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 72 bp TGCATCCGCTGCAGTCGCGCGGCGACCTCCTCAGGGTaGAGCGCGGCGGGCATCGGGTCCGGGGCGCCCTCG +
Preference number: 6 (lower is better)
Translates to: CIRCSRAATSSG*SAAGIGSGAPS
Trigger: CGAGGGCGCCCCGGACCCGATGCCCGCCGCGCTGCACCCTGAGGAGGTCGCCGCGCGACTGCAGCGGATGCA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 72 bp ATTTTCCTGCGGTTGCTCAGCTCCCGCTGCATCCGCTaGAGTCGCGCGGCGACCTCCTCAGGGTGCAGCGCG +
Preference number: 6 (lower is better)
Translates to: IFLRLLSSRCIR*SRAATSSGCSA
Trigger: CGCGCTGCACCCTGAGGAGGTCGCCGCGCGACTGCAGCGGATGCAGCGGGAGCTGAGCAACCGCAGGAAAAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 72 bp TTCACCAGGATTTTCCTGCGGTTGCTCAGCTCCCGCTaGATCCGCTGCAGTCGCGCGGCGACCTCCTCAGGG +
Preference number: 6 (lower is better)
Translates to: FTRIFLRLLSSR*IRCSRAATSSG
Trigger: CCCTGAGGAGGTCGCCGCGCGACTGCAGCGGATGCAGCGGGAGCTGAGCAACCGCAGGAAAATCCTGGTGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS TCA 72 bp CCTTCTGCCATTCCCACCGTGGCTGGCTGTTTCTCCTaGGTATTACTGTGCCCTGGCCCAGCCTGTCCAGCA +
Preference number: 6 (lower is better)
Translates to: PSAIPTVAGCFS*VLLCPGPACPA
Trigger: TGCTGGACAGGCTGGGCCAGGGCACAGTAATACTCAGGAGAAACAGCCAGCCACGGTGGGAATGGCAGAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS TCA 72 bp CAGGAGCACAGAAGGAAACCTGGACTTTGCTGCCCTTaGTGGTCATACCGTCTGCTGCCTGCTGGACCTCTT +
Preference number: 6 (lower is better)
Translates to: QEHRRKPGLCCP*WSYRLLPAGPL
Trigger: AAGAGGTCCAGCAGGCAGCAGACGGTATGACCATCAAGGGCAGCAAAGTCCAGGTTTCCTTCTGTGCTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS GCA 72 bp GTCATACCGTCTGCTGCCTGCTGGACCTCTTCAGCCTaGTCCGCAGTGCTATATTCAACCACTGCAAAGCCA +
Preference number: 6 (lower is better)
Translates to: VIPSAACWTSSA*SAVLYSTTAKP
Trigger: TGGCTTTGCAGTGGTTGAATATAGCACTGCGGAGCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGTATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS GCA 72 bp ACTTTGCTGCCCTTGATGGTCATACCGTCTGCTGCCTaGTGGACCTCTTCAGCCTGCTCCGCAGTGCTATAT +
Preference number: 6 (lower is better)
Translates to: TLLPLMVIPSAA*WTSSACSAVLY
Trigger: ATATAGCACTGCGGAGCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGTATGACCATCAAGGGCAGCAAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS CCA 72 bp GAGGCAGCCCCTGAACTTATCTCTGTGCCTTTTGGCTaGCTTTGCTGCTGCTTATGGTGTCCCACCAGCAAG +
Preference number: 6 (lower is better)
Translates to: EAAPELISVPFG*LCCCLWCPTSK
Trigger: CTTGCTGGTGGGACACCATAAGCAGCAGCAAAGCCAGCCAAAAGGCACAGAGATAAGTTCAGGGGCTGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 72 bp CTCTTCAGCCTGCTCCGCAGTGCTATATTCAACCACTaGAAAGCCACCAACGTAACTACCTTCATCCTGTGC +
Preference number: 6 (lower is better)
Translates to: LFSLLRSAIFNH*KATNVTTFILC
Trigger: GCACAGGATGAAGGTAGTTACGTTGGTGGCTTTGCAGTGGTTGAATATAGCACTGCGGAGCAGGCTGAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS CCA 72 bp CCAAGAACGGCTGGTTTAACAGCTCGTCCACATAACTaGGGCTGTAGAAGAACTTGCAACATGGCAGGGTTG +
Preference number: 6 (lower is better)
Translates to: PRTAGLTARPHN*GCRRTCNMAGL
Trigger: CAACCCTGCCATGTTGCAAGTTCTTCTACAGCCCCAGTTATGTGGACGAGCTGTTAAACCAGCCGTTCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS CAA 72 bp TGTGCCCTGGCCCAGCCTGTCCAGCAATGTGCTGATTaGGAAAGAATGGTAACATGCCCATTCCAGCTGTTA +
Preference number: 6 (lower is better)
Translates to: CALAQPVQQCAD*ERMVTCPFQLL
Trigger: TAACAGCTGGAATGGGCATGTTACCATTCTTTCCAAATCAGCACATTGCTGGACAGGCTGGGCCAGGGCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS TCA 72 bp GGAGAGATGGATGGATTCATCAGATGTGGCAAGCTGTaGGGTGTTCCAAGAACGGCTGGTTTAACAGCTCGT +
Preference number: 6 (lower is better)
Translates to: GEMDGFIRCGKL*GVPRTAGLTAR
Trigger: ACGAGCTGTTAAACCAGCCGTTCTTGGAACACCTCACAGCTTGCCACATCTGATGAATCCATCCATCTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS CAA 90 bp GAGTATTACTGTGCCCTGGCCCAGCCTGTCCAGCAATGTGCTGATTaGGAAAGAATGGTAACATGCCCATTCCAGCTGTTATCGTTGTTT +
Preference number: 6 (lower is better)
Translates to: EYYCALAQPVQQCAD*ERMVTCPFQLLSLF
Trigger: AAACAACGATAACAGCTGGAATGGGCATGTTACCATTCTTTCCAAATCAGCACATTGCTGGACAGGCTGGGCCAGGGCACAGTAATACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS TCA 72 bp CGAATTTCTTTTGGTGGTTCTCCCAAGAGTGAAGTTTaGTTCTTAGAGGCAGCCCCTGAACTTATCTCTGTG +
Preference number: 6 (lower is better)
Translates to: RISFGGSPKSEV*FLEAAPELISV
Trigger: CACAGAGATAAGTTCAGGGGCTGCCTCTAAGAATCAAACTTCACTCTTGGGAGAACCACCAAAAGAAATTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS GCA 72 bp GTCCAGCAATGTGCTGATTTGGAAAGAATGGTAACATaGCCATTCCAGCTGTTATCGTTGTTTGAGTTGGAA +
Preference number: 6 (lower is better)
Translates to: VQQCADLERMVT*PFQLLSLFELE
Trigger: TTCCAACTCAAACAACGATAACAGCTGGAATGGGCATGTTACCATTCTTTCCAAATCAGCACATTGCTGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS CAA 90 bp CGTCCACATAACTGGGGCTGTAGAAGAACTTGCAACATGGCAGGGTaGTTTAAACTTTTCATAATTTGTACTGGATTTGGCTCTGGAAGT +
Preference number: 6 (lower is better)
Translates to: RPHNWGCRRTCNMAG*FKLFIICTGFGSGS
Trigger: ACTTCCAGAGCCAAATCCAGTACAAATTATGAAAAGTTTAAACAACCCTGCCATGTTGCAAGTTCTTCTACAGCCCCAGTTATGTGGACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS TCA 72 bp ACTGAGCCGAATTTCTTTTGGTGGTTCTCCCAAGAGTaGAGTTTGATTCTTAGAGGCAGCTTTTATGTGCTT +
Preference number: 6 (lower is better)
Translates to: TEPNFFWWFSQE*SLILRGSFYVL
Trigger: AAGCACATAAAAGCTGCCTCTAAGAATCAAACTTCACTCTTGGGAGAACCACCAAAAGAAATTCGGCTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418058.1
CDS GCA 72 bp ACAGCTCGTCCACATAACTGGGGCTGTAGAAGAACTTaGAACATGGCAGGGTTGTTTAAACTTTTCATAATT +
Preference number: 6 (lower is better)
Translates to: TARPHNWGCRRT*NMAGLFKLFII
Trigger: AATTATGAAAAGTTTAAACAACCCTGCCATGTTGCAAGTTCTTCTACAGCCCCAGTTATGTGGACGAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS TCA 72 bp GGCACGTTGGTAATACACAACAAAGCATCTGTTGGCTaGAGCTGGACTATTAAGTCTTTTCCTCTAAAAGAA +
Preference number: 6 (lower is better)
Translates to: GTLVIHNKASVG*SWTIKSFPLKE
Trigger: TTCTTTTAGAGGAAAAGACTTAATAGTCCAGCTTCAGCCAACAGATGCTTTGTTGTGTATTACCAACGTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS TCA 72 bp AATGGTAACATGCCCATTCCAGCTGTTATCGTTGTTTaGGTTGGAATCAGGCTAGATGTTTTATGTGCTTCT +
Preference number: 6 (lower is better)
Translates to: NGNMPIPAVIVV*VGIRLDVLCAS
Trigger: AGAAGCACATAAAACATCTAGCCTGATTCCAACTCAAACAACGATAACAGCTGGAATGGGCATGTTACCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8
CDS CAA 72 bp AACTGGGGCTGTAGAAGAACTTGCAACATGGCAGGGTaGTTTAAACTTTTCATAATTTGTACTGGATTTGGC +
Preference number: 6 (lower is better)
Translates to: NWGCRRTCNMAG*FKLFIICTGFG
Trigger: GCCAAATCCAGTACAAATTATGAAAAGTTTAAACAACCCTGCCATGTTGCAAGTTCTTCTACAGCCCCAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000294428.7
ENST00000371072.8
ENST00000418058.1
CDS TCA 72 bp TCACTGGGGAGTTTATCAATACAAAGGCACTTAGAATaGATGAGCTCTGAAGCCAATAGATTAACATCCATC +
Preference number: 6 (lower is better)
Translates to: SLGSLSIQRHLE*MSSEANRLTSI
Trigger: GATGGATGTTAATCTATTGGCTTCAGAGCTCATTCATTCTAAGTGCCTTTGTATTGATAAACTCCCCAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000294428.7
ENST00000371072.8