RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RASSF6 (Homo sapiens)

Ensembl gene IDs: ENSG00000169435

Ensembl transcript IDs: ENST00000307439.10, ENST00000335049.5, ENST00000342081.7, ENST00000395777.6, ENST00000512591.1

Found 339 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACCTAGGGGGTTGGCTGTACCAGCTTGTCCAGTATCTGTGGTCCTaGTCTGGCCTGGGCAAGCCAGCAAACTTCTCTCCAGTGGGCTGC +
Preference number: 1 (lower is better)
Translates to: HLGGWLYQLVQYLWS*SGLGKPANFSPVGC
Trigger: GCAGCCCACTGGAGAGAAGTTTGCTGGCTTGCCCAGGCCAGAGCAGGACCACAGATACTGGACAAGCTGGTACAGCCAACCCCCTAGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 90 bp CTGCATATCTGCCCACCTGCCTCAGCTGGTCCACACCTAGGGGGTTaGCTGTACCAGCTTGTCCAGTATCTGTGGTCCTGCTCTGGCCTG +
Preference number: 1 (lower is better)
Translates to: LHICPPASAGPHLGG*LYQLVQYLWSCSGL
Trigger: CAGGCCAGAGCAGGACCACAGATACTGGACAAGCTGGTACAGCCAACCCCCTAGGTGTGGACCAGCTGAGGCAGGTGGGCAGATATGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR GCA 90 bp CTTTGTGCTTACCCTTTGGCAAAGCCCCAAGTCCCTCTGCATATCTaGCCACCTGCCTCAGCTGGTCCACACCTAGGGGGTTGGCTGTAC +
Preference number: 1 (lower is better)
Translates to: LCAYPLAKPQVPLHI*PPASAGPHLGGWLY
Trigger: GTACAGCCAACCCCCTAGGTGTGGACCAGCTGAGGCAGGTGGGCAGATATGCAGAGGGACTTGGGGCTTTGCCAAAGGGTAAGCACAAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR TCA 90 bp TGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTaGGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAA +
Preference number: 1 (lower is better)
Translates to: WVHTHTEDPAGLANY*ATCLSFVLCSLVTQ
Trigger: TTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 90 bp AGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTACCCTTTaGCAAAGCCCCAAGTCCCTCTGCATATCTGCCCACCTGCCTCAG +
Preference number: 1 (lower is better)
Translates to: SASNRTRDSFFVLTL*QSPKSLCISAHLPQ
Trigger: CTGAGGCAGGTGGGCAGATATGCAGAGGGACTTGGGGCTTTGCCAAAGGGTAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR TCA 90 bp TTGGGCAGTGGTGGTATAACCTGGAGCCACAGTGCAAGCCGGTCCTaGAGCTCCAATTGCTGCTCTCCATTTCTTCTCTTCAGCTGGGTG +
Preference number: 1 (lower is better)
Translates to: LGSGGITWSHSASRS*SSNCCSPFLLFSWV
Trigger: CACCCAGCTGAAGAGAAGAAATGGAGAGCAGCAATTGGAGCTTCAGGACCGGCTTGCACTGTGGCTCCAGGTTATACCACCACTGCCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR GCA 90 bp CCTGAAGCTCCAATTGCTGCTCTCCATTTCTTCTCTTCAGCTGGGTaGACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAG +
Preference number: 1 (lower is better)
Translates to: PEAPIAALHFFSSAG*TLIQRTLLGWPTTE
Trigger: CTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAGCAGCAATTGGAGCTTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 90 bp TGTGGTCCTGCTCTGGCCTGGGCAAGCCAGCAAACTTCTCTCCAGTaGGCTGCAACCACACCTTCTCCAGTGAATTCTGAAACCCTCATT +
Preference number: 1 (lower is better)
Translates to: CGPALAWASQQTSLQ*AATTPSPVNSETLI
Trigger: AATGAGGGTTTCAGAATTCACTGGAGAAGGTGTGGTTGCAGCCCACTGGAGAGAAGTTTGCTGGCTTGCCCAGGCCAGAGCAGGACCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 90 bp TCCAGGGCTGCTCAGGACATGGCAGTTGACTTCCCCCAGAGCAAGTaGTCCAAGAGAGAGCAAGGAGGAAGCCACAGTGACTTTTATGAC +
Preference number: 1 (lower is better)
Translates to: SRAAQDMAVDFPQSK*SKREQGGSHSDFYD
Trigger: GTCATAAAAGTCACTGTGGCTTCCTCCTTGCTCTCTCTTGGACCACTTGCTCTGGGGGAAGTCAACTGCCATGTCCTGAGCAGCCCTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR GCA 90 bp TCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTaGTGGGCTGGCCAACTACTGAGCCACTTGCCTGAGCTTTGTCTT +
Preference number: 1 (lower is better)
Translates to: SISSLQLGAHSYRGP*WAGQLLSHLPELCL
Trigger: AAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTaGGCTGGCCAACTACTGAGCCACTTGCCTGAGCTTTGTCTTGTG +
Preference number: 1 (lower is better)
Translates to: ISSLQLGAHSYRGPC*AGQLLSHLPELCLV
Trigger: CACAAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 90 bp CTCCAGCATTTCTCCACTTGCTTCTCTAGCTTTTGCTTTGGGCAGTaGTGGTATAACCTGGAGCCACAGTGCAAGCCGGTCCTGAAGCTC +
Preference number: 1 (lower is better)
Translates to: LQHFSTCFSSFCFGQ*WYNLEPQCKPVLKL
Trigger: GAGCTTCAGGACCGGCTTGCACTGTGGCTCCAGGTTATACCACCACTGCCCAAAGCAAAAGCTAGAGAAGCAAGTGGAGAAATGCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR TCA 90 bp ATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCACTTGCCTaGGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCTAGGT +
Preference number: 1 (lower is better)
Translates to: IQRTLLGWPTTEPLA*ALSCAVSSHKVMLG
Trigger: ACCTAGCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 90 bp CAGCATTTCTCCACTTGCTTCTCTAGCTTTTGCTTTGGGCAGTGGTaGTATAACCTGGAGCCACAGTGCAAGCCGGTCCTGAAGCTCCAA +
Preference number: 1 (lower is better)
Translates to: QHFSTCFSSFCFGQW*YNLEPQCKPVLKLQ
Trigger: TTGGAGCTTCAGGACCGGCTTGCACTGTGGCTCCAGGTTATACCACCACTGCCCAAAGCAAAAGCTAGAGAAGCAAGTGGAGAAATGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 90 bp CAGTTTCTGAGGATGAGGAATCCAGAATGGTTTCCTTGGGTTTTCTaGCTGAAGGTCTCTCATGAAATTACGGTCAAGCTATTAGACAGG +
Preference number: 1 (lower is better)
Translates to: QFLRMRNPEWFPWVF*LKVSHEITVKLLDR
Trigger: CCTGTCTAATAGCTTGACCGTAATTTCATGAGAGACCTTCAGCCAGAAAACCCAAGGAAACCATTCTGGATTCCTCATCCTCAGAAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR TCA 90 bp CATTCACTGTTGGTTGCCCGCTCCGTGAAAATAGATATAGACTCTTaGAATGTTTCCTTTGCAGCTTGCATGATGGCATACTTTGTCAGT +
Preference number: 1 (lower is better)
Translates to: HSLLVARSVKIDIDS*NVSFAACMMAYFVS
Trigger: ACTGACAAAGTATGCCATCATGCAAGCTGCAAAGGAAACATTTCAAGAGTCTATATCTATTTTCACGGAGCGGGCAACCAACAGTGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGGGAAGGGGTCTTTCCTaGTTCCTCCAGGCTGACAGG +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTRGRGLS*FLQADR
Trigger: CCTGTCAGCCTGGAGGAATCAGGAAAGACCCCTTCC...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGAGTGCAAGCCGGTCCTaGAGCTCCAATTGCTGCTCT +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTRSASRS*SSNCCS
Trigger: AGAGCAGCAATTGGAGCTTCAGGACCGGCTTGCACT...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR GCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCAGTCCCTCTGCATATCTaGCCACCTGCCTCAGCTGGT +
Preference number: 2 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPVPLHI*PPASAG
Trigger: ACCAGCTGAGGCAGGTGGGCAGATATGCAGAGGGAC...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR GCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGGAGTGGTTTCTGCAGTaGTGGTTGCCTGTAGGGTGC +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTREWFLQ*WLPVGC
Trigger: GCACCCTACAGGCAACCAGCACTGCAGAAACCACTC...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCACTTGTCCAGTATCTGTaGTCCTGCTCTGGCCTGGGC +
Preference number: 2 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPLVQYL*SCSGLG
Trigger: GCCCAGGCCAGAGCAGGACCACAGATACTGGACAAG...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGTGGTTTCTGCAGTGCTaGTTGCCTGTAGGGTGCAGC +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTRWFLQC*LPVGCS
Trigger: GCTGCACCCTACAGGCAACCAGCACTGCAGAAACCA...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGGTCAGTAGAGGGCGCTaGAGACACACTGCAAGAGGA +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTRVSRGR*RHTARG
Trigger: TCCTCTTGCAGTGTGTCTCCAGCGCCCTCTACTGAC...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGCTACTTTGCCTGGAGTaGTTTCTGCAGTGCTGGTTG +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTRLLCLE*FLQCWL
Trigger: CAACCAGCACTGCAGAAACCACTCCAGGCAAAGTAG...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGTTTTGCTTTGGGCAGTaGTGGTATAACCTGGAGCCA +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTRFCFGQ*WYNLEP
Trigger: TGGCTCCAGGTTATACCACCACTGCCCAAAGCAAAA...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCACCACACCTTCTCCAGTaGATTCTGAAACCCTCATTC +
Preference number: 2 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPPHLLQ*ILKPSF
Trigger: GAATGAGGGTTTCAGAATTCACTGGAGAAGGTGTGG...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR GCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGCTGAGCTTTGTCTTGTaGAGTCTCGTCACACAAAGT +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTRLSFVL*SLVTQS
Trigger: ACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAG...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCCCCACCTGCCTCAGCTaGTCCACACCTAGGGGGTTG +
Preference number: 2 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSPTCLS*STPRGL
Trigger: CAACCCCCTAGGTGTGGACCAGCTGAGGCAGGTGGG...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCTCGAACAGAACCCGTaGCTCCTTCTTTGTGCTTAC +
Preference number: 2 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGLEQNP*LLLCAY
Trigger: GTAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAG...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR GCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCGCATATCTGCCCACCTaGCTCAGCTGGTCCACACCT +
Preference number: 2 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSAYLPT*LSWSTP
Trigger: AGGTGTGGACCAGCTGAGGCAGGTGGGCAGATATGC...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR GCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCGTCCCTCTGCATATCTaGCCACCTGCCTCAGCTGGT +
Preference number: 2 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSVPLHI*PPASAG
Trigger: ACCAGCTGAGGCAGGTGGGCAGATATGCAGAGGGAC...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCTCTGTGGTCCTGCTCTaGCCTGGGCAAGCCAGCAAA +
Preference number: 2 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSSVVLL*PGQASK
Trigger: TTTGCTGGCTTGCCCAGGCCAGAGCAGGACCACAGA...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGATGTTTCAGTTCTCTTaGGAGTCCAAGCTAAATGAA +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTRMFQFS*ESKLNE
Trigger: TTCATTTAGCTTGGACTCTCAAGAGAACTGAAACAT...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGCTTGTTTCTGTCTTCTaGTTGATACAGACTAACACA +
Preference number: 2 (lower is better)
Translates to: PASASRVAGIIGACHCTRLVSVF*LIQTNT
Trigger: TGTGTTAGTCTGTATCAATCAGAAGACAGAAACAAG...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp GAGCAAGGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCGGGCTGGCCAACTACTaGGCCACTTGCCTGAGCTTT +
Preference number: 2 (lower is better)
Translates to: EQGGSHSDFYDLLQSLTVGLANY*ATCLSF
Trigger: AAAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCC...GACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCCTTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR-3UTR GCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCTGAGCTTTGTCTTGTaGAGTCTCGTCACACAAAGT +
Preference number: 2 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGLSFVL*SLVTQS
Trigger: ACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAG...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp GAGCAAGGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTACAGAGGACCCTGCTaGGCTGGCCAACTACTGAGC +
Preference number: 2 (lower is better)
Translates to: EQGGSHSDFYDLLQSLTVYRGPC*AGQLLS
Trigger: GCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTA...GACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCCTTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR-3UTR GCA 90 bp GAGCAAGGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCGCGCTGGAGACACACTaGAAGAGGAAGGGGTCTTTC +
Preference number: 2 (lower is better)
Translates to: EQGGSHSDFYDLLQSLTVALETH*KRKGSF
Trigger: GAAAGACCCCTTCCTCTTGCAGTGTGTCTCCAGCGC...GACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCCTTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR-3UTR CCA 90 bp GGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTCTTCCCCATGTTGGCCAGGCTaGTCTCGAAATCCCAACCTC +
Preference number: 2 (lower is better)
Translates to: GGSHSDFYDLLQSLTVSSPCWPG*SRNPNL
Trigger: GAGGTTGGGATTTCGAGACCAGCCTGGCCAACATGG...GGAAGAGACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR-3UTR GCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCGCATATCTGCCCACCTaGCTCAGCTGGTCCACACCT +
Preference number: 2 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFAYLPT*LSWSTP
Trigger: AGGTGTGGACCAGCTGAGGCAGGTGGGCAGATATGC...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGATTAATATTGACAGGTaGAAGAATAGCGATGCAAGC +
Preference number: 2 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWINIDR*KNSDAS
Trigger: GCTTGCATCGCTATTCTTTCACCTGTCAATATTAAT...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTACATTTTGTCCAACTGTaGACCCTAATTAACCTCATC +
Preference number: 2 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLHFVQL*TLINLI
Trigger: GATGAGGTTAATTAGGGTTCACAGTTGGACAAAATG...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACCTCGAACAGAACCCGTaGCTCCTTCTTTGTGCTTAC +
Preference number: 2 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHLEQNP*LLLCAY
Trigger: GTAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAG...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACCAAACTTCTCTCCAGTaGGCTGCAACCACACCTTCT +
Preference number: 2 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHQTSLQ*AATTPS
Trigger: AGAAGGTGTGGTTGCAGCCCACTGGAGAGAAGTTTG...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCATTTTGTCCAACTGTaGACCCTAATTAACCTCATC +
Preference number: 2 (lower is better)
Translates to: AKRAEFGIPYVTSATTALHFVQL*TLINLI
Trigger: GATGAGGTTAATTAGGGTTCACAGTTGGACAAAATG...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
3UTR-3UTR TCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCATTAATATTGACAGGTaGAAGAATAGCGATGCAAGC +
Preference number: 2 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSINIDR*KNSDAS
Trigger: GCTTGCATCGCTATTCTTTCACCTGTCAATATTAAT...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR GCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCTTCTCTTCAGCTGGGTaGACACTCATACAGAGGACC +
Preference number: 2 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFFSSAG*TLIQRT
Trigger: GGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAA...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR GCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCTGGTTGCCTGTAGGGTaGAGCTTTCTCCAGCATTTC +
Preference number: 2 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFWLPVG*SFLQHF
Trigger: GAAATGCTGGAGAAAGCTGCACCCTACAGGCAACCA...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR GCA 90 bp GGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTCTTCCGTTTCCTTTGCAGCTTaGATGATGGCATACTTTGTC +
Preference number: 2 (lower is better)
Translates to: GGSHSDFYDLLQSLTVSSVSFAA*MMAYFV
Trigger: GACAAAGTATGCCATCATGCAAGCTGCAAAGGAAAC...GGAAGAGACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR-3UTR GCA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACTTTCCTTCACTACTTTaGCTGGAGTGGTTTCTGCAG +
Preference number: 2 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHFPSLL*LEWFLQ
Trigger: CTGCAGAAACCACTCCAGGCAAAGTAGTGAAGGAAA...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp GAGCAAGGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCATGTTTCAGTTCTCTTaGGAGTCCAAGCTAAATGAA +
Preference number: 2 (lower is better)
Translates to: EQGGSHSDFYDLLQSLTVMFQFS*ESKLNE
Trigger: TTCATTTAGCTTGGACTCTCAAGAGAACTGAAACAT...GACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCCTTGCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR-3UTR TCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCCTTGTTTCTGTCTTCTaGTTGATACAGACTAACACA +
Preference number: 2 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFLVSVF*LIQTNT
Trigger: TGTGTTAGTCTGTATCAATCAGAAGACAGAAACAAG...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR GCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCTACTTAGTGGCCATTTaGATTCTCTCTTCTGTGATT +
Preference number: 2 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFYLVAI*ILSSVI
Trigger: AATCACAGAAGAGAGAATGCAAATGGCCACTAAGTA...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACAAATAGGTATTTGTaGGCCAAGTCTTACTTTAGC +
Preference number: 2 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFTNRYL*AKSYFS
Trigger: GCTAAAGTAAGACTTGGCCCACAAATACCTATTTGT...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR TCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAACATTTTGTCCAACTGTaGACCCTAATTAACCTCATC +
Preference number: 2 (lower is better)
Translates to: VISESIDYVSVLLRVQAKHFVQL*TLINLI
Trigger: GATGAGGTTAATTAGGGTTCACAGTTGGACAAAATG...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
3UTR GCA 72 bp GGCAAAGCCCCAAGTCCCTCTGCATATCTGCCCACCTaGCTCAGCTGGTCCACACCTAGGGGGTTGGCTGTA +
Preference number: 3 (lower is better)
Translates to: GKAPSPSAYLPT*LSWSTPRGLAV
Trigger: TACAGCCAACCCCCTAGGTGTGGACCAGCTGAGGCAGGTGGGCAGATATGCAGAGGGACTTGGGGCTTTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR GCA 72 bp TACCCTTTGGCAAAGCCCCAAGTCCCTCTGCATATCTaGCCACCTGCCTCAGCTGGTCCACACCTAGGGGGT +
Preference number: 3 (lower is better)
Translates to: YPLAKPQVPLHI*PPASAGPHLGG
Trigger: ACCCCCTAGGTGTGGACCAGCTGAGGCAGGTGGGCAGATATGCAGAGGGACTTGGGGCTTTGCCAAAGGGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCACTTTGTGCTTACCCTTaGGCAAAGCCCCAAGTCCCT +
Preference number: 3 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPLCAYP*AKPQVP
Trigger: AGGGACTTGGGGCTTTGCCAAAGGGTAAGCACAAAG...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR TCA 72 bp CGCTGGAGACACACTGCAAGAGGAAGGGGTCTTTCCTaGTTCCTCCAGGCTGACAGGCCAGGCTACTGGAGA +
Preference number: 3 (lower is better)
Translates to: RWRHTARGRGLS*FLQADRPGYWR
Trigger: TCTCCAGTAGCCTGGCCTGTCAGCCTGGAGGAATCAGGAAAGACCCCTTCCTCTTGCAGTGTGTCTCCAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR GCA 72 bp TCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTaGTGGGCTGGCCAACTACTGAGCCACTTGCCTGAG +
Preference number: 3 (lower is better)
Translates to: SLQLGAHSYRGP*WAGQLLSHLPE
Trigger: CTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 72 bp ACCAGCTTGTCCAGTATCTGTGGTCCTGCTCTGGCCTaGGCAAGCCAGCAAACTTCTCTCCAGTGGGCTGCA +
Preference number: 3 (lower is better)
Translates to: TSLSSICGPALA*ASQQTSLQWAA
Trigger: TGCAGCCCACTGGAGAGAAGTTTGCTGGCTTGCCCAGGCCAGAGCAGGACCACAGATACTGGACAAGCTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 72 bp GCTGTACCAGCTTGTCCAGTATCTGTGGTCCTGCTCTaGCCTGGGCAAGCCAGCAAACTTCTCTCCAGTGGG +
Preference number: 3 (lower is better)
Translates to: AVPACPVSVVLL*PGQASKLLSSG
Trigger: CCCACTGGAGAGAAGTTTGCTGGCTTGCCCAGGCCAGAGCAGGACCACAGATACTGGACAAGCTGGTACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 72 bp CTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTaGGCTGGCCAACTACTGAGCCACTTGCCTGAGCTT +
Preference number: 3 (lower is better)
Translates to: LQLGAHSYRGPC*AGQLLSHLPEL
Trigger: AAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 72 bp GCTCAGGACATGGCAGTTGACTTCCCCCAGAGCAAGTaGTCCAAGAGAGAGCAAGGAGGAAGCCACAGTGAC +
Preference number: 3 (lower is better)
Translates to: AQDMAVDFPQSK*SKREQGGSHSD
Trigger: GTCACTGTGGCTTCCTCCTTGCTCTCTCTTGGACCACTTGCTCTGGGGGAAGTCAACTGCCATGTCCTGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR-3UTR CAA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGCATTCCTGCCTTTCCTaGTTAGGATTCTTTCCCTCA +
Preference number: 3 (lower is better)
Translates to: PASASRVAGIIGACHCTRHSCLS*LGFFPS
Trigger: TGAGGGAAAGAATCCTAACAAGGAAAGGCAGGAATG...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGTTTTCCTTCACTACTTaGCCTGGAGTGGTTTCTGCA +
Preference number: 3 (lower is better)
Translates to: PASASRVAGIIGACHCTRFSFTT*PGVVSA
Trigger: TGCAGAAACCACTCCAGGCAAAGTAGTGAAGGAAAA...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR TCA 72 bp ACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTaGGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTC +
Preference number: 3 (lower is better)
Translates to: THTEDPAGLANY*ATCLSFVLCSL
Trigger: GAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR GCA 72 bp CCAATTGCTGCTCTCCATTTCTTCTCTTCAGCTGGGTaGACACTCATACAGAGGACCCTGCTGGGCTGGCCA +
Preference number: 3 (lower is better)
Translates to: PIAALHFFSSAG*TLIQRTLLGWP
Trigger: TGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAGCAGCAATTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR TCA 72 bp ACCCTGCTGGGCTGGCCAACTACTGAGCCACTTGCCTaGGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTT +
Preference number: 3 (lower is better)
Translates to: TLLGWPTTEPLA*ALSCAVSSHKV
Trigger: AACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 72 bp TCCACTTGCTTCTCTAGCTTTTGCTTTGGGCAGTGGTaGTATAACCTGGAGCCACAGTGCAAGCCGGTCCTG +
Preference number: 3 (lower is better)
Translates to: STCFSSFCFGQW*YNLEPQCKPVL
Trigger: CAGGACCGGCTTGCACTGTGGCTCCAGGTTATACCACCACTGCCCAAAGCAAAAGCTAGAGAAGCAAGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR TCA 72 bp GGTGGTATAACCTGGAGCCACAGTGCAAGCCGGTCCTaGAGCTCCAATTGCTGCTCTCCATTTCTTCTCTTC +
Preference number: 3 (lower is better)
Translates to: GGITWSHSASRS*SSNCCSPFLLF
Trigger: GAAGAGAAGAAATGGAGAGCAGCAATTGGAGCTTCAGGACCGGCTTGCACTGTGGCTCCAGGTTATACCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 72 bp TTCTCCACTTGCTTCTCTAGCTTTTGCTTTGGGCAGTaGTGGTATAACCTGGAGCCACAGTGCAAGCCGGTC +
Preference number: 3 (lower is better)
Translates to: FSTCFSSFCFGQ*WYNLEPQCKPV
Trigger: GACCGGCTTGCACTGTGGCTCCAGGTTATACCACCACTGCCCAAAGCAAAAGCTAGAGAAGCAAGTGGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCATCAGCTACAACAGCCTaGCTTTATCCATTGTATTCA +
Preference number: 3 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPSATTA*LYPLYS
Trigger: TGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGA...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGCAACTACTGAGCCACTaGCCTGAGCTTTGTCTTGTG +
Preference number: 3 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWQLLSH*PELCLV
Trigger: CACAAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTG...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCCTTTGTGCTTACCCTTaGGCAAAGCCCCAAGTCCCT +
Preference number: 3 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCLCAYP*AKPQVP
Trigger: AGGGACTTGGGGCTTTGCCAAAGGGTAAGCACAAAG...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCAACAAATAGGTATTaGTGGGCCAAGTCTTACTTT +
Preference number: 3 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWATNRY*WAKSYF
Trigger: AAAGTAAGACTTGGCCCACAAATACCTATTTGTTGC...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCGCAACAAATAGGTATTaGTGGGCCAAGTCTTACTTT +
Preference number: 3 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSATNRY*WAKSYF
Trigger: AAAGTAAGACTTGGCCCACAAATACCTATTTGTTGC...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTATCAGCTACAACAGCCTaGCTTTATCCATTGTATTCA +
Preference number: 3 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLSATTA*LYPLYS
Trigger: TGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGA...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACCAACTACTGAGCCACTaGCCTGAGCTTTGTCTTGTG +
Preference number: 3 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHQLLSH*PELCLV
Trigger: CACAAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTG...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp GAGCAAGGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTTTTCCTTCACTACTTaGCCTGGAGTGGTTTCTGCA +
Preference number: 3 (lower is better)
Translates to: EQGGSHSDFYDLLQSLTVFSFTT*PGVVSA
Trigger: TGCAGAAACCACTCCAGGCAAAGTAGTGAAGGAAAA...GACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCCTTGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR TCA 72 bp ATGGTTTCCTTGGGTTTTCTGGCTGAAGGTCTCTCATaGAATTACGGTCAAGCTATTAGACAGGGCTGCAGT +
Preference number: 3 (lower is better)
Translates to: MVSLGFLAEGLS*NYGQAIRQGCS
Trigger: ACTGCAGCCCTGTCTAATAGCTTGACCGTAATTTCATGAGAGACCTTCAGCCAGAAAACCCAAGGAAACCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR-3UTR CAA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACCATTCCTGCCTTTCCTaGTTAGGATTCTTTCCCTCA +
Preference number: 3 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHHSCLS*LGFFPS
Trigger: TGAGGGAAAGAATCCTAACAAGGAAAGGCAGGAATG...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR TCA 72 bp TTGGTTGCCCGCTCCGTGAAAATAGATATAGACTCTTaGAATGTTTCCTTTGCAGCTTGCATGATGGCATAC +
Preference number: 3 (lower is better)
Translates to: LVARSVKIDIDS*NVSFAACMMAY
Trigger: GTATGCCATCATGCAAGCTGCAAAGGAAACATTTCAAGAGTCTATATCTATTTTCACGGAGCGGGCAACCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 72 bp TATCTCATACAGTTTCTGAGGATGAGGAATCCAGAATaGTTTCCTTGGGTTTTCTGGCTGAAGGTCTCTCAT +
Preference number: 3 (lower is better)
Translates to: YLIQFLRMRNPE*FPWVFWLKVSH
Trigger: ATGAGAGACCTTCAGCCAGAAAACCCAAGGAAACCATTCTGGATTCCTCATCCTCAGAAACTGTATGAGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR-3UTR CAA 90 bp GGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTCTTCCGCCTTGCTTTATCCATaGTATTCATTCAGCAACAAA +
Preference number: 3 (lower is better)
Translates to: GGSHSDFYDLLQSLTVSSALLYP*YSFSNK
Trigger: TTTGTTGCTGAATGAATACAATGGATAAAGCAAGGC...GGAAGAGACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR GCA 72 bp ATTTTACTGTCTCTCAGCTCCACATTCACTGTTGGTTaGCCGCTCCGTGAAAATAGATATAGACTCTTGAAA +
Preference number: 3 (lower is better)
Translates to: ILLSLSSTFTVG*PLRENRYRLLK
Trigger: TTTCAAGAGTCTATATCTATTTTCACGGAGCGGGCAACCAACAGTGAATGTGGAGCTGAGAGACAGTAAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCATACTTAGTGGCCATTaGCATTCTCTCTTCTGTGAT +
Preference number: 3 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFILSGH*HSLFCD
Trigger: ATCACAGAAGAGAGAATGCAAATGGCCACTAAGTAT...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR-3UTR CAA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCTACAGACTAACACAGTaGTTCACTGTTAAGATACGA +
Preference number: 3 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFYRLTQ*FTVKIR
Trigger: TCGTATCTTAACAGTGAACAACTGTGTTAGTCTGTA...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CCA 72 bp ATCCATTGTATTCATTCAGCAACAAATAGGTATTTGTaGGCCAAGTCTTACTTTAGCCGATGTAATATGTCT +
Preference number: 3 (lower is better)
Translates to: IHCIHSATNRYL*AKSYFSRCNMS
Trigger: AGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAATACAATGGAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCACCCACCTGCCTCAGCTaGTCCACACCTAGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPPTCLS*STPRGL
Trigger: CAACCCCCTAGGTGTGGACCAGCTGAGGCAGGTGGG...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCACTGATTCCTCCAGGCTaGCAGGCCAGGCTACTGGAG +
Preference number: 4 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPLIPPG*QARLLE
Trigger: CTCCAGTAGCCTGGCCTGTCAGCCTGGAGGAATCAG...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGTCAGGACATGGCAGTTaGCTTCCCCCAGAGCAAGTG +
Preference number: 4 (lower is better)
Translates to: PASASRVAGIIGACHCTRSGHGS*LPPEQV
Trigger: CACTTGCTCTGGGGGAAGTCAACTGCCATGTCCTGA...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR GCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGCCAGTGCCCTGTCTCTaGCGGGCTGGGACTCCGCGA +
Preference number: 4 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWPVPCL*RAGTPR
Trigger: TCGCGGAGTCCCAGCCCGGCAGAGACAGGGCACTGG...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR GCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCATCATACAGAGGACCCTaGTGGGCTGGCCAACTACTG +
Preference number: 4 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPSYRGP*WAGQLL
Trigger: CAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGA...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCGGAAGGGGTCTTTCCTaGTTCCTCCAGGCTGACAGG +
Preference number: 4 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGGRGLS*FLQADR
Trigger: CCTGTCAGCCTGGAGGAATCAGGAAAGACCCCTTCC...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCGCATATCTGCCCACCTaGCTCAGCTGGTCCACACCT +
Preference number: 4 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGAYLPT*LSWSTP
Trigger: AGGTGTGGACCAGCTGAGGCAGGTGGGCAGATATGC...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGGCTCAGCTGGGCGCTTaGAGTGCCCCCGACGCGATC +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALAQLGA*SAPDAI
Trigger: GATCGCGTCGGGGGCACTGCAAGCGCCCAGCTGAGC...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS-3UTR CCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGTCAGACATAGGAATCTaGGTCCTGTCCAGCTCACTA +
Preference number: 4 (lower is better)
Translates to: PASASRVAGIIGACHCTRSDIGI*VLSSSL
Trigger: TAGTGAGCTGGACAGGACCCAGATTCCTATGTCTGA...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGGGTTCTATAGAGCACTaGGGAGTCTGGTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: PASASRVAGIIGACHCTRGSIEH*GVWFIL
Trigger: AAGGATGAACCAGACTCCCCAGTGCTCTATAGAACC...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCAGTGCAAGCCGGTCCTaGAGCTCCAATTGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGSASRS*SSNCCS
Trigger: AGAGCAGCAATTGGAGCTTCAGGACCGGCTTGCACT...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCAAGCGTGTCATTCCTTTaGTGGAGAAGACGTCTGATG +
Preference number: 4 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPSVSFL*WRRRLM
Trigger: CATCAGACGTCTTCTCCAGCAAAGGAATGACACGCT...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGTCCCTCTGCATATCTaGCCACCTGCCTCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWVPLHI*PPASAG
Trigger: ACCAGCTGAGGCAGGTGGGCAGATATGCAGAGGGAC...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGTTTCCTTCACTACTTTaGCTGGAGTGGTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: PASASRVAGIIGACHCTRFPSLL*LEWFLQ
Trigger: CTGCAGAAACCACTCCAGGCAAAGTAGTGAAGGAAA...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCGCGCTGGAGACACACTaGAAGAGGAAGGGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGALETH*KRKGSF
Trigger: GAAAGACCCCTTCCTCTTGCAGTGTGTCTCCAGCGC...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGAGGACCCTGCTGGGCTaGCCAACTACTGAGCCACTT +
Preference number: 4 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWRTLLG*PTTEPL
Trigger: AAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCT...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCCAGGCTGGAGAGCAGTaGCGCCATCTCGGCTCATGC +
Preference number: 4 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCQAGEQ*RHLGSC
Trigger: GCATGAGCCGAGATGGCGCCACTGCTCTCCAGCCTG...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCCTGATTCCTCCAGGCTaGCAGGCCAGGCTACTGGAG +
Preference number: 4 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCLIPPG*QARLLE
Trigger: CTCCAGTAGCCTGGCCTGTCAGCCTGGAGGAATCAG...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCACCTTTGCAGCTTGCATaGTGGCATACTTTGTCAGTA +
Preference number: 4 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPPLQLA*WHTLSV
Trigger: TACTGACAAAGTATGCCATCATGCAAGCTGCAAAGG...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGCCCTGTAGGAGCCTCTaGAGTAGCGGAATGTCTGTC +
Preference number: 4 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWPCRSL*SSGMSV
Trigger: GACAGACATTCCGCTACTGCAGAGGCTCCTACAGGG...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCAGTGTCATTCCTTTGCTaGAGAAGACGTCTGATGACT +
Preference number: 4 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPVSFLC*RRRLMT
Trigger: AGTCATCAGACGTCTTCTCCAGCAAAGGAATGACAC...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCATTTCTTCTCTTCAGCTaGGTGCACACTCATACAGAG +
Preference number: 4 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPFLLFS*VHTHTE
Trigger: CTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAA...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCTCTCCTCCCAGAGCATaGCTCAGCTGGGCGCTTGCA +
Preference number: 4 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCSPPRA*LSWALA
Trigger: TGCAAGCGCCCAGCTGAGCCATGCTCTGGGAGGAGA...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS-3UTR TCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGACTGAGCCACTTGCCTaGGCTTTGTCTTGTGCAGTC +
Preference number: 4 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWTEPLA*ALSCAV
Trigger: GACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAGT...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCGGAAGGGGTCTTTCCTaGTTCCTCCAGGCTGACAGG +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSGRGLS*FLQADR
Trigger: CCTGTCAGCCTGGAGGAATCAGGAAAGACCCCTTCC...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGGTGGCTTCAGGGTGTTaGTGTGATAAGATAAATAGT +
Preference number: 4 (lower is better)
Translates to: PASASRVAGIIGACHCTRVASGC*CDKINS
Trigger: ACTATTTATCTTATCACAGCAACACCCTGAAGCCAC...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTAGCATATCTGCCCACCTaGCTCAGCTGGTCCACACCT +
Preference number: 4 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLAYLPT*LSWSTP
Trigger: AGGTGTGGACCAGCTGAGGCAGGTGGGCAGATATGC...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CCTGCCTCAGCCTCCCGAGTAGCTGGCATTATAGGTGCCTGCCATTGCACCCGGCAGCATTTCTCCACTTaGTTCTCTAGCTTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: PASASRVAGIIGACHCTRQHFST*FSSFCF
Trigger: AAAGCAAAAGCTAGAGAAGCAAGTGGAGAAATGCTG...CCGGGTGCAATGGCAGGCACCTATAATGCCAGCTACTCGGGAGGCTGAGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCTGGTTGCCTGTAGGGTaGAGCTTTCTCCAGCATTTC +
Preference number: 4 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGWLPVG*SFLQHF
Trigger: GAAATGCTGGAGAAAGCTGCACCCTACAGGCAACCA...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACGCTGGGCGCTTGCAGTaGCCCCGACGCGATCAGCGA +
Preference number: 4 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHAGRLQ*PRRDQR
Trigger: TCGCTGATCGCGTCGGGGGCACTGCAAGCGCCCAGC...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS-3UTR CCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAAACTTCTCTCCAGTaGGCTGCAACCACACCTTCT +
Preference number: 4 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGQTSLQ*AATTPS
Trigger: AGAAGGTGTGGTTGCAGCCCACTGGAGAGAAGTTTG...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTATCTGTGGTCCTGCTCTaGCCTGGGCAAGCCAGCAAA +
Preference number: 4 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLSVVLL*PGQASK
Trigger: TTTGCTGGCTTGCCCAGGCCAGAGCAGGACCACAGA...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCAGGACCCTGCTGGGCTaGCCAACTACTGAGCCACTT +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSRTLLG*PTTEPL
Trigger: AAGTGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCT...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCTACAGAGGACCCTGCTaGGCTGGCCAACTACTGAGC +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSYRGPC*AGQLLS
Trigger: GCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTA...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGTTCCCCCAGAGCAAGTaGTCCAAGAGAGAGCAAGGA +
Preference number: 4 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWFPQSK*SKREQG
Trigger: TCCTTGCTCTCTCTTGGACCACTTGCTCTGGGGGAA...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307439.10
3UTR CAA 72 bp TCACTACTTTGCCTGGAGTGGTTTCTGCAGTGCTGGTaGCCTGTAGGGTGCAGCTTTCTCCAGCATTTCTCC +
Preference number: 4 (lower is better)
Translates to: SLLCLEWFLQCW*PVGCSFLQHFS
Trigger: GGAGAAATGCTGGAGAAAGCTGCACCCTACAGGCAACCAGCACTGCAGAAACCACTCCAGGCAAAGTAGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCAGTGCAAGCCGGTCCTaGAGCTCCAATTGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCSASRS*SSNCCS
Trigger: AGAGCAGCAATTGGAGCTTCAGGACCGGCTTGCACT...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTATCATACAGAGGACCCTaGTGGGCTGGCCAACTACTG +
Preference number: 4 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLSYRGP*WAGQLL
Trigger: CAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGA...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCACAGCATTTCTCCACTTaGTTCTCTAGCTTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPQHFST*FSSFCF
Trigger: AAAGCAAAAGCTAGAGAAGCAAGTGGAGAAATGCTG...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCGGTTCTATAGAGCACTaGGGAGTCTGGTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGGSIEH*GVWFIL
Trigger: AAGGATGAACCAGACTCCCCAGTGCTCTATAGAACC...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTAAGTGGTGGTATAACCTaGAGCCACAGTGCAAGCCGG +
Preference number: 4 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLSGGIT*SHSASR
Trigger: CCGGCTTGCACTGTGGCTCCAGGTTATACCACCACT...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTACCATGTTGGCCAGGCTaGTCTCGAAATCCCAACCTC +
Preference number: 4 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLPCWPG*SRNPNL
Trigger: GAGGTTGGGATTTCGAGACCAGCCTGGCCAACATGG...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCAATGTTTCAGTTCTCTTaGGAGTCCAAGCTAAATGAA +
Preference number: 4 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPMFQFS*ESKLNE
Trigger: TTCATTTAGCTTGGACTCTCAAGAGAACTGAAACAT...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCCCTGTAGGAGCCTCTaGAGTAGCGGAATGTCTGTC +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALPCRSL*SSGMSV
Trigger: GACAGACATTCCGCTACTGCAGAGGCTCCTACAGGG...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGAGCTGGCATTATAGGTaGCTGCCATTGCACCCGGCT +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALSWHYR*LPLHPA
Trigger: AGCCGGGTGCAATGGCAGGCACCTATAATGCCAGCT...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCAGAGCATGGCTCAGCTaGGCGCTTGCAGTGCCCCCG +
Preference number: 4 (lower is better)
Translates to: PYVTSATTALLYPLYSFSRAWLS*ALAVPP
Trigger: CGGGGGCACTGCAAGCGCCCAGCTGAGCCATGCTCT...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS-3UTR GCA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTATTCTCTTCAGCTGGGTaGACACTCATACAGAGGACC +
Preference number: 4 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLFSSAG*TLIQRT
Trigger: GGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAA...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGTTAGAGACGGAGTCTTaGTCTGTCGTCCAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALLETES*SVVQAG
Trigger: TCCAGCCTGGACGACAGAGCAAGACTCCGTCTCTAA...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCGAGCTGCTTCACTCATaGTTCTATAGAGCACTGGGG +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSELLHS*FYRALG
Trigger: CCCCAGTGCTCTATAGAACCATGAGTGAAGCAGCTC...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCCAAACTTCTCTCCAGTaGGCTGCAACCACACCTTCT +
Preference number: 4 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCQTSLQ*AATTPS
Trigger: AGAAGGTGTGGTTGCAGCCCACTGGAGAGAAGTTTG...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTCAGGCTGGAGAGCAGTaGCGCCATCTCGGCTCATGC +
Preference number: 4 (lower is better)
Translates to: RVWDSLCNFSYNSLALSIQAGEQ*RHLGSC
Trigger: GCATGAGCCGAGATGGCGCCACTGCTCTCCAGCCTG...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTACCACACCTTCTCCAGTaGATTCTGAAACCCTCATTC +
Preference number: 4 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLPHLLQ*ILKPSF
Trigger: GAATGAGGGTTTCAGAATTCACTGGAGAAGGTGTGG...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCCCACACCTTCTCCAGTaGATTCTGAAACCCTCATTC +
Preference number: 4 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCPHLLQ*ILKPSF
Trigger: GAATGAGGGTTTCAGAATTCACTGGAGAAGGTGTGG...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCTGCTATGTAACAAATTaGCCCAAATTTAGCGGCGTA +
Preference number: 4 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGCYVTN*PKFSGV
Trigger: TACGCCGCTAAATTTGGGGCAATTTGTTACATAGCA...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCTTCATCCTTTGCATGTaGCTTCAGGGTGTTGCTGTG +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSFILCM*LQGVAV
Trigger: CACAGCAACACCCTGAAGCCACATGCAAAGGATGAA...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACCCACCTGCCTCAGCTaGTCCACACCTAGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVPTCLS*STPRGL
Trigger: CAACCCCCTAGGTGTGGACCAGCTGAGGCAGGTGGG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGTTTGTGCTTACCCTTTaGCAAAGCCCCAAGTCCCTC +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALFVLTL*QSPKSL
Trigger: GAGGGACTTGGGGCTTTGCCAAAGGGTAAGCACAAA...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GAGCAAGGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTGCTTTGGGCAGTGGTaGTATAACCTGGAGCCACAG +
Preference number: 4 (lower is better)
Translates to: EQGGSHSDFYDLLQSLTVCFGQW*YNLEPQ
Trigger: CTGTGGCTCCAGGTTATACCACCACTGCCCAAAGCA...GACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCCTTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CCA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAACTCTGTCGTCCAGGCTaGAGAGCAGTGGCGCCATCT +
Preference number: 4 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQLCRPG*RAVAPS
Trigger: AGATGGCGCCACTGCTCTCCAGCCTGGACGACAGAG...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACGGGCTGCTCAGGACATaGCAGTTGACTTCCCCCAGA +
Preference number: 4 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHGLLRT*QLTSPR
Trigger: TCTGGGGGAAGTCAACTGCCATGTCCTGAGCAGCCC...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGTTTCCTTGGGTTTTCTaGCTGAAGGTCTCTCATGAA +
Preference number: 4 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWFPWVF*LKVSHE
Trigger: TTCATGAGAGACCTTCAGCCAGAAAACCCAAGGAAA...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR TCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGTCTGACCTTAGTTTCTaGTTCAAAGGCTGGAATGAA +
Preference number: 4 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWSDLSF*FKGWNE
Trigger: TTCATTCCAGCCTTTGAATCAGAAACTAAGGTCAGA...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGCATTTTGTCCAACTGTaGACCCTAATTAACCTCATC +
Preference number: 4 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWHFVQL*TLINLI
Trigger: GATGAGGTTAATTAGGGTTCACAGTTGGACAAAATG...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCGGGCTGGCCAACTACTaGGCCACTTGCCTGAGCTTT +
Preference number: 4 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFGLANY*ATCLSF
Trigger: AAAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCC...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGGGCTGGCCAACTACTaGGCCACTTGCCTGAGCTTT +
Preference number: 4 (lower is better)
Translates to: RVWDSLCNFSYNSLALSIGLANY*ATCLSF
Trigger: AAAGCTCAGGCAAGTGGCTCAGTAGTTGGCCAGCCC...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGAGTCATCTGAAGGCTTaGCTGAGGCTGGAAGATCTA +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALSHLKA*LRLEDL
Trigger: TAGATCTTCCAGCCTCAGTCAAGCCTTCAGATGACT...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR GCA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTCAGTATCTGTGGTCCTaGTCTGGCCTGGGCAAGCCA +
Preference number: 4 (lower is better)
Translates to: RVWDSLCNFSYNSLALSIQYLWS*SGLGKP
Trigger: TGGCTTGCCCAGGCCAGAGCAGGACCACAGATACTG...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGTTCATCCTTTGCATGTaGCTTCAGGGTGTTGCTGTG +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALFILCM*LQGVAV
Trigger: CACAGCAACACCCTGAAGCCACATGCAAAGGATGAA...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCACAAATAGGTATTTGTaGGCCAAGTCTTACTTTAGC +
Preference number: 4 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGTNRYL*AKSYFS
Trigger: GCTAAAGTAAGACTTGGCCCACAAATACCTATTTGT...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCTTTCTTCTCTTCAGCTaGGTGCACACTCATACAGAG +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSFLLFS*VHTHTE
Trigger: CTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAA...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp GGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTCTTCCCAAGAGGGGTACTGGTaGGCCATCATAGTCATCTTT +
Preference number: 4 (lower is better)
Translates to: GGSHSDFYDLLQSLTVSSQEGYW*AIIVIF
Trigger: AAAGATGACTATGATGGCTCACCAGTACCCCTCTTG...GGAAGAGACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR TCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCAGCCCATTTTCAGGATaGGGAAGATTAAGCTTCATC +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSSPFSG*GRLSFI
Trigger: GATGAAGCTTAATCTTCCTCATCCTGAAAATGGGCT...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR GCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACAGTATCTGTGGTCCTaGTCTGGCCTGGGCAAGCCA +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVQYLWS*SGLGKP
Trigger: TGGCTTGCCCAGGCCAGAGCAGGACCACAGATACTG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCGTCAGTAGAGGGCGCTaGAGACACACTGCAAGAGGA +
Preference number: 4 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFVSRGR*RHTARG
Trigger: TCCTCTTGCAGTGTGTCTCCAGCGCCCTCTACTGAC...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAACCATGTTGGCCAGGCTaGTCTCGAAATCCCAACCTC +
Preference number: 4 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQPCWPG*SRNPNL
Trigger: GAGGTTGGGATTTCGAGACCAGCCTGGCCAACATGG...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGTCTTTTCCTCCTTTTTaGGATGGTCTGAGGATATCC +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALSFPPF*DGLRIS
Trigger: GGATATCCTCAGACCATCTCAAAAAGGAGGAAAAGA...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCGTGGCTTCAGGGTGTTaGTGTGATAAGATAAATAGT +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSVASGC*CDKINS
Trigger: ACTATTTATCTTATCACAGCAACACCCTGAAGCCAC...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCTTTTCTCACCAGAGCTaGTTCACTCATGGTTCTATA +
Preference number: 4 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCFSHQS*FTHGSI
Trigger: TATAGAACCATGAGTGAAGCAGCTCTGGTGAGAAAA...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTCTTCCTTTCCTTCACTACTTTaGCTGGAGTGGTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: GGSHSDFYDLLQSLTVSSFPSLL*LEWFLQ
Trigger: CTGCAGAAACCACTCCAGGCAAAGTAGTGAAGGAAA...GGAAGAGACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR GCA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCGGCATTATAGGTGCCTaGCATTGCACCCGGCTCATT +
Preference number: 4 (lower is better)
Translates to: PYVTSATTALLYPLYSFSGIIGA*HCTRLI
Trigger: AATGAGCCGGGTGCAATGGCAGGCACCTATAATGCC...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTCGGTTTGTTCTCGGCTaGGTCAGGAACTCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: RVWDSLCNFSYNSLALSIRFVLG*VRNSGR
Trigger: TCTACCAGAGTTCCTGACCCAGCCGAGAACAAACCG...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000395777.6
CDS-3UTR CCA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAAGAGCACTGGGGAGTCTaGTTCATCCTTTGCATGTGG +
Preference number: 4 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQEHWGV*FILCMW
Trigger: CCACATGCAAAGGATGAACCAGACTCCCCAGTGCTC...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTTGCTTTGGGCAGTGGTaGTATAACCTGGAGCCACAG +
Preference number: 4 (lower is better)
Translates to: RVWDSLCNFSYNSLALSICFGQW*YNLEPQ
Trigger: CTGTGGCTCCAGGTTATACCACCACTGCCCAAAGCA...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAACTCTGTCGTCCAGGCTaGAGAGCAGTGGCGCCATCT +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKLCRPG*RAVAPS
Trigger: AGATGGCGCCACTGCTCTCCAGCCTGGACGACAGAG...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACCATCGTTGTTCGGCTaGACTTGCTTCGCGGTTTGT +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVPSLFG*TCFAVC
Trigger: ACAAACCGCGAAGCAAGTTCAGCCGAACAACGATGG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000395777.6
CDS-3UTR TCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGTCTGACCTTAGTTTCTaGTTCAAAGGCTGGAATGAA +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALSDLSF*FKGWNE
Trigger: TTCATTCCAGCCTTTGAATCAGAAACTAAGGTCAGA...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCTTTCTGTCTTCTGATTaGTACAGACTAACACAGTTG +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSFLSSD*YRLTQL
Trigger: CAACTGTGTTAGTCTGTATCAATCAGAAGACAGAAA...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCCTTGTTTCTGTCTTCTaGTTGATACAGACTAACACA +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSLVSVF*LIQTNT
Trigger: TGTGTTAGTCTGTATCAATCAGAAGACAGAAACAAG...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCCTCGAACAGAACCCGTaGCTCCTTCTTTGTGCTTAC +
Preference number: 4 (lower is better)
Translates to: PYVTSATTALLYPLYSFSLEQNP*LLLCAY
Trigger: GTAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAG...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCCTCGAACAGAACCCGTaGCTCCTTCTTTGTGCTTAC +
Preference number: 4 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFLEQNP*LLLCAY
Trigger: GTAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAG...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCGTCCCCATCTCATGGTaGTTTATTGAGTATTTAATG +
Preference number: 4 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSVPISW*FIEYLM
Trigger: CATTAAATACTCAATAAATCACCATGAGATGGGGAC...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTATCAATCAATTTTTATTaGGCACATCCTACGCACAAG +
Preference number: 4 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLSINFY*AHPTHK
Trigger: CTTGTGCGTAGGATGTGCTCAATAAAAATTGATTGA...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR GCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATACCCTGTAGGAGCCTCTaGAGTAGCGGAATGTCTGTC +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDIPCRSL*SSGMSV
Trigger: GACAGACATTCCGCTACTGCAGAGGCTCCTACAGGG...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGAGTCCCTCTGCATATCTaGCCACCTGCCTCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRVPLHI*PPASAG
Trigger: ACCAGCTGAGGCAGGTGGGCAGATATGCAGAGGGAC...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCTGGTTGCCTGTAGGGTaGAGCTTTCTCCAGCATTTC +
Preference number: 4 (lower is better)
Translates to: PYVTSATTALLYPLYSFSWLPVG*SFLQHF
Trigger: GAAATGCTGGAGAAAGCTGCACCCTACAGGCAACCA...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATAGAGTGGTTTCTGCAGTaGTGGTTGCCTGTAGGGTGC +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDIEWFLQ*WLPVGC
Trigger: GCACCCTACAGGCAACCAGCACTGCAGAAACCACTC...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACTCAGACATAGGAATCTaGGTCCTGTCCAGCTCACTA +
Preference number: 4 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHSDIGI*VLSSSL
Trigger: TAGTGAGCTGGACAGGACCCAGATTCCTATGTCTGA...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCGAGCTGCTTCACTCATaGTTCTATAGAGCACTGGGG +
Preference number: 4 (lower is better)
Translates to: PYVTSATTALLYPLYSFSELLHS*FYRALG
Trigger: CCCCAGTGCTCTATAGAACCATGAGTGAAGCAGCTC...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGATCTGTGGTCCTGCTCTaGCCTGGGCAAGCCAGCAAA +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRSVVLL*PGQASK
Trigger: TTTGCTGGCTTGCCCAGGCCAGAGCAGGACCACAGA...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGACTTGTCCAGTATCTGTaGTCCTGCTCTGGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRLVQYL*SCSGLG
Trigger: GCCCAGGCCAGAGCAGGACCACAGATACTGGACAAG...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAACTTGTCCAGTATCTGTaGTCCTGCTCTGGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKLVQYL*SCSGLG
Trigger: GCCCAGGCCAGAGCAGGACCACAGATACTGGACAAG...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTTTTGTGCTTACCCTTTaGCAAAGCCCCAAGTCCCTC +
Preference number: 4 (lower is better)
Translates to: RVWDSLCNFSYNSLALSIFVLTL*QSPKSL
Trigger: GAGGGACTTGGGGCTTTGCCAAAGGGTAAGCACAAA...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATAAGTGGTGGTATAACCTaGAGCCACAGTGCAAGCCGG +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDISGGIT*SHSASR
Trigger: CCGGCTTGCACTGTGGCTCCAGGTTATACCACCACT...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACTTTTGCTTTGGGCAGTaGTGGTATAACCTGGAGCCA +
Preference number: 4 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHFCFGQ*WYNLEP
Trigger: TGGCTCCAGGTTATACCACCACTGCCCAAAGCAAAA...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GAGCAAGGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCATGAGGAATCCAGAATaGTTTCCTTGGGTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: EQGGSHSDFYDLLQSLTVMRNPE*FPWVFW
Trigger: CCAGAAAACCCAAGGAAACCATTCTGGATTCCTCAT...GACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCCTTGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR TCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATACCATCGTTGTTCGGCTaGACTTGCTTCGCGGTTTGT +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDIPSLFG*TCFAVC
Trigger: ACAAACCGCGAAGCAAGTTCAGCCGAACAACGATGG...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000395777.6
CDS-3UTR TCA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCCTGTTATTCACACTGTaGGCAGGAGGACCCTTTTCA +
Preference number: 4 (lower is better)
Translates to: PYVTSATTALLYPLYSFSLLFTL*AGGPFS
Trigger: TGAAAAGGGTCCTCCTGCTCACAGTGTGAATAACAG...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000395777.6
CDS-3UTR TCA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAACTGTTATTCACACTGTaGGCAGGAGGACCCTTTTCA +
Preference number: 4 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQLLFTL*AGGPFS
Trigger: TGAAAAGGGTCCTCCTGCTCACAGTGTGAATAACAG...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000395777.6
CDS-3UTR TCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCCAAGAGGGGTACTGGTaGGCCATCATAGTCATCTTT +
Preference number: 4 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFQEGYW*AIIVIF
Trigger: AAAGATGACTATGATGGCTCACCAGTACCCCTCTTG...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGATTAATATTGACAGGTaGAAGAATAGCGATGCAAGC +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALINIDR*KNSDAS
Trigger: GCTTGCATCGCTATTCTTTCACCTGTCAATATTAAT...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAACCCTGTAGGAGCCTCTaGAGTAGCGGAATGTCTGTC +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKPCRSL*SSGMSV
Trigger: GACAGACATTCCGCTACTGCAGAGGCTCCTACAGGG...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATAGTTATGCTAGGTTCCTaGAAAGTAGGTCCCTCCGGC +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDIVMLGS*KVGPSG
Trigger: GCCGGAGGGACCTACTTTGCAGGAACCTAGCATAAC...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAGAGTGGTTTCTGCAGTaGTGGTTGCCTGTAGGGTGC +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKEWFLQ*WLPVGC
Trigger: GCACCCTACAGGCAACCAGCACTGCAGAAACCACTC...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGAGCGCTGGAGACACACTaGAAGAGGAAGGGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRALETH*KRKGSF
Trigger: GAAAGACCCCTTCCTCTTGCAGTGTGTCTCCAGCGC...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGAAGCTGGCATTATAGGTaGCTGCCATTGCACCCGGCT +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRSWHYR*LPLHPA
Trigger: AGCCGGGTGCAATGGCAGGCACCTATAATGCCAGCT...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAGAGCTGCTTCACTCATaGTTCTATAGAGCACTGGGG +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVELLHS*FYRALG
Trigger: CCCCAGTGCTCTATAGAACCATGAGTGAAGCAGCTC...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGACAAATAGGTATTTGTaGGCCAAGTCTTACTTTAGC +
Preference number: 4 (lower is better)
Translates to: AKRAEFGIPYVTSATTALTNRYL*AKSYFS
Trigger: GCTAAAGTAAGACTTGGCCCACAAATACCTATTTGT...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAATGGTTTCTGCAGTGCTaGTTGCCTGTAGGGTGCAGC +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKWFLQC*LPVGCS
Trigger: GCTGCACCCTACAGGCAACCAGCACTGCAGAAACCA...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACTACTTTGCCTGGAGTaGTTTCTGCAGTGCTGGTTG +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVLLCLE*FLQCWL
Trigger: CAACCAGCACTGCAGAAACCACTCCAGGCAAAGTAG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTCTTCACTACTTTGCCTaGAGTGGTTTCTGCAGTGCT +
Preference number: 4 (lower is better)
Translates to: RVWDSLCNFSYNSLALSILHYFA*SGFCSA
Trigger: AGCACTGCAGAAACCACTCCAGGCAAAGTAGTGAAG...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAGTCAGTAGAGGGCGCTaGAGACACACTGCAAGAGGA +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKVSRGR*RHTARG
Trigger: TCCTCTTGCAGTGTGTCTCCAGCGCCCTCTACTGAC...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
3UTR CAA 72 bp GTTGGTTGCCCGCTCCGTGAAAATAGATATAGACTCTaGAAATGTTTCCTTTGCAGCTTGCATGATGGCATA +
Preference number: 4 (lower is better)
Translates to: VGCPLRENRYRL*KCFLCSLHDGI
Trigger: TATGCCATCATGCAAGCTGCAAAGGAAACATTTCAAGAGTCTATATCTATTTTCACGGAGCGGGCAACCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAACTGAGCCACTTGCCTaGGCTTTGTCTTGTGCAGTC +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKTEPLA*ALSCAV
Trigger: GACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAGT...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGAAAGTGTCAAGAAACCTaGGCCACTCCCTGTGCCTCA +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRKCQET*ATPCAS
Trigger: TGAGGCACAGGGAGTGGCTCAGGTTTCTTGACACTT...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS-3UTR TCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACTTTTTGAGATGGTCTaGGGATATCCTGTAGGGGAG +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVLFEMV*GYPVGE
Trigger: CTCCCCTACAGGATATCCTCAGACCATCTCAAAAAG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS-3UTR GCA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTCTGAGCTTTGTCTTGTaGAGTCTCGTCACACAAAGT +
Preference number: 4 (lower is better)
Translates to: RVWDSLCNFSYNSLALSILSFVL*SLVTQS
Trigger: ACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAG...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCCTGAGCTTTGTCTTGTaGAGTCTCGTCACACAAAGT +
Preference number: 4 (lower is better)
Translates to: PYVTSATTALLYPLYSFSLSFVL*SLVTQS
Trigger: ACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAG...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACGTTTCCTTTGCAGCTTaGATGATGGCATACTTTGTC +
Preference number: 4 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHVSFAA*MMAYFV
Trigger: GACAAAGTATGCCATCATGCAAGCTGCAAAGGAAAC...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAGAGCACTGGGGAGTCTaGTTCATCCTTTGCATGTGG +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKEHWGV*FILCMW
Trigger: CCACATGCAAAGGATGAACCAGACTCCCCAGTGCTC...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGAGAGCACTGGGGAGTCTaGTTCATCCTTTGCATGTGG +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPREHWGV*FILCMW
Trigger: CCACATGCAAAGGATGAACCAGACTCCCCAGTGCTC...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATACTACTTTGCCTGGAGTaGTTTCTGCAGTGCTGGTTG +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDILLCLE*FLQCWL
Trigger: CAACCAGCACTGCAGAAACCACTCCAGGCAAAGTAG...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACTTCACTACTTTGCCTaGAGTGGTTTCTGCAGTGCT +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVLHYFA*SGFCSA
Trigger: AGCACTGCAGAAACCACTCCAGGCAAAGTAGTGAAG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACCAGAATGGTTTCCTTaGGTTTTCTGGCTGAAGGTC +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVPEWFP*VFWLKV
Trigger: GACCTTCAGCCAGAAAACCCAAGGAAACCATTCTGG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR TCA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACCTTTTTGAGATGGTCTaGGGATATCCTGTTATTCAC +
Preference number: 4 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHLFEMV*GYPVIH
Trigger: GTGAATAACAGGATATCCTCAGACCATCTCAAAAAG...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR TCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATACAAGAGGGGTACTGGTaGGCCATCATAGTCATCTTT +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDIQEGYW*AIIVIF
Trigger: AAAGATGACTATGATGGCTCACCAGTACCCCTCTTG...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACCTTTGCAGCTTGCATaGTGGCATACTTTGTCAGTA +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVPLQLA*WHTLSV
Trigger: TACTGACAAAGTATGCCATCATGCAAGCTGCAAAGG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAGAGCTGCTTCACTCATaGTTCTATAGAGCACTGGGG +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKELLHS*FYRALG
Trigger: CCCCAGTGCTCTATAGAACCATGAGTGAAGCAGCTC...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTTTTTCTCACCAGAGCTaGTTCACTCATGGTTCTATA +
Preference number: 4 (lower is better)
Translates to: RVWDSLCNFSYNSLALSIFSHQS*FTHGSI
Trigger: TATAGAACCATGAGTGAAGCAGCTCTGGTGAGAAAA...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCTTTTCTCACCAGAGCTaGTTCACTCATGGTTCTATA +
Preference number: 4 (lower is better)
Translates to: PYVTSATTALLYPLYSFSFSHQS*FTHGSI
Trigger: TATAGAACCATGAGTGAAGCAGCTCTGGTGAGAAAA...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCTTTGGTAGAACTCTGTaGTTGCATGTGCTTGTTACT +
Preference number: 4 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFFGRTL*LHVLVT
Trigger: AGTAACAAGCACATGCAAGCACAGAGTTCTACCAAA...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR GCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAACCATCTTCAGTCAGTTaGCTTGTGACCAGAATGAGG +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKPSSVS*LVTRMR
Trigger: CCTCATTCTGGTCACAAGGCAACTGACTGAAGATGG...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000335049.5
CDS-3UTR CCA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCTCCTCCTTTTTGAGATaGTCTGAGGATATCCTGTTA +
Preference number: 4 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFSSFLR*SEDILL
Trigger: TAACAGGATATCCTCAGACCATCTCAAAAAGGAGGA...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAATCAGACATAGGAATCTaGGTCCTGTCCAGCTCACTA +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKSDIGI*VLSSSL
Trigger: TAGTGAGCTGGACAGGACCCAGATTCCTATGTCTGA...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGATTCATCCTTTGCATGTaGCTTCAGGGTGTTGCTGTG +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRFILCM*LQGVAV
Trigger: CACAGCAACACCCTGAAGCCACATGCAAAGGATGAA...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAATTCATCCTTTGCATGTaGCTTCAGGGTGTTGCTGTG +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKFILCM*LQGVAV
Trigger: CACAGCAACACCCTGAAGCCACATGCAAAGGATGAA...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAGGTTCTATAGAGCACTaGGGAGTCTGGTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKGSIEH*GVWFIL
Trigger: AAGGATGAACCAGACTCCCCAGTGCTCTATAGAACC...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAACTTTTGTCATGTTCATaGCAGGTACATGACACTAGT +
Preference number: 4 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQLLSCS*QVHDTS
Trigger: ACTAGTGTCATGTACCTGCCATGAACATGACAAAAG...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
3UTR CAA 72 bp TTATTATTTTACTGTCTCTCAGCTCCACATTCACTGTaGGTTGCCCGCTCCGTGAAAATAGATATAGACTCT +
Preference number: 4 (lower is better)
Translates to: LLFYCLSAPHSL*VARSVKIDIDS
Trigger: AGAGTCTATATCTATTTTCACGGAGCGGGCAACCAACAGTGAATGTGGAGCTGAGAGACAGTAAAATAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACATTTTGTCCAACTGTaGACCCTAATTAACCTCATC +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVHFVQL*TLINLI
Trigger: GATGAGGTTAATTAGGGTTCACAGTTGGACAAAATG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAAATGTTTCAGTTCTCTTaGGAGTCCAAGCTAAATGAA +
Preference number: 4 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQMFQFS*ESKLNE
Trigger: TTCATTTAGCTTGGACTCTCAAGAGAACTGAAACAT...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAATTTCTGTCTTCTGATTaGTACAGACTAACACAGTTG +
Preference number: 4 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQFLSSD*YRLTQL
Trigger: CAACTGTGTTAGTCTGTATCAATCAGAAGACAGAAA...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAACTTGTTTCTGTCTTCTaGTTGATACAGACTAACACA +
Preference number: 4 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQLVSVF*LIQTNT
Trigger: TGTGTTAGTCTGTATCAATCAGAAGACAGAAACAAG...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATACTTGGGTTTTCTGGCTaGAGGTCTCTCATGAAATTA +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDILGFSG*RSLMKL
Trigger: TAATTTCATGAGAGACCTTCAGCCAGAAAACCCAAG...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR GCA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAACTTCAACAATTAGTTTaGCATCTTCAGTCTCTCCAT +
Preference number: 4 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQLQQLV*HLQSLH
Trigger: ATGGAGAGACTGAAGATGGCAAACTAATTGTTGAAG...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCTACTTAGTGGCCATTTaGATTCTCTCTTCTGTGATT +
Preference number: 4 (lower is better)
Translates to: PYVTSATTALLYPLYSFSYLVAI*ILSSVI
Trigger: AATCACAGAAGAGAGAATGCAAATGGCCACTAAGTA...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAGTGTCATTCCTTTGCTaGAGAAGACGTCTGATGACT +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKVSFLC*RRRLMT
Trigger: AGTCATCAGACGTCTTCTCCAGCAAAGGAATGACAC...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACTTTTGTCATGTTCATaGCAGGTACATGACACTAGT +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVLLSCS*QVHDTS
Trigger: ACTAGTGTCATGTACCTGCCATGAACATGACAAAAG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
3UTR CAA 72 bp GGCCATAGCACACTTTCACCTTCAACCAGTTTAGGTTaGGTAATACTGAGAAGTAATGCCTTTGTCTTAAAA +
Preference number: 4 (lower is better)
Translates to: GHSTLSPSTSLG*VILRSNAFVLK
Trigger: TTTTAAGACAAAGGCATTACTTCTCAGTATTACCAAACCTAAACTGGTTGAAGGTGAAAGTGTGCTATGGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAATCTTTTCCTCCTTTTTaGGATGGTCTGAGGATATCC +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKSFPPF*DGLRIS
Trigger: GGATATCCTCAGACCATCTCAAAAAGGAGGAAAAGA...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGATCTTTTCCTCCTTTTTaGGATGGTCTGAGGATATCC +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRSFPPF*DGLRIS
Trigger: GGATATCCTCAGACCATCTCAAAAAGGAGGAAAAGA...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATACATTTTGTCCAACTGTaGACCCTAATTAACCTCATC +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDIHFVQL*TLINLI
Trigger: GATGAGGTTAATTAGGGTTCACAGTTGGACAAAATG...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATTAATATTGACAGGTaGAAGAATAGCGATGCAAGC +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVINIDR*KNSDAS
Trigger: GCTTGCATCGCTATTCTTTCACCTGTCAATATTAAT...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAGTCCCCATCTCATGGTaGTTTATTGAGTATTTAATG +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVVPISW*FIEYLM
Trigger: CATTAAATACTCAATAAATCACCATGAGATGGGGAC...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR GCA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATAGTGGCTTCAGGGTGTTaGTGTGATAAGATAAATAGT +
Preference number: 4 (lower is better)
Translates to: GICGPSLTLADVICLCDIVASGC*CDKINS
Trigger: ACTATTTATCTTATCACAGCAACACCCTGAAGCCAC...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTATACTTAGTGGCCATTTaGATTCTCTCTTCTGTGATT +
Preference number: 4 (lower is better)
Translates to: FIQQQIGICGPSLTLADVYLVAI*ILSSVI
Trigger: AATCACAGAAGAGAGAATGCAAATGGCCACTAAGTA...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGAGTTTCCTTTGCAGCTTaGATGATGGCATACTTTGTC +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRVSFAA*MMAYFV
Trigger: GACAAAGTATGCCATCATGCAAGCTGCAAAGGAAAC...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR TCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAATCTGACCTTAGTTTCTaGTTCAAAGGCTGGAATGAA +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKSDLSF*FKGWNE
Trigger: TTCATTCCAGCCTTTGAATCAGAAACTAAGGTCAGA...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
CDS-3UTR GCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAGTGGCTTCAGGGTGTTaGTGTGATAAGATAAATAGT +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKVASGC*CDKINS
Trigger: ACTATTTATCTTATCACAGCAACACCCTGAAGCCAC...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAATTTTCTCACCAGAGCTaGTTCACTCATGGTTCTATA +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKFSHQS*FTHGSI
Trigger: TATAGAACCATGAGTGAAGCAGCTCTGGTGAGAAAA...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAACTTCAACAATTAGTTTaGCATCTTCAGTCAGTTGCC +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKLQQLV*HLQSVA
Trigger: GGCAACTGACTGAAGATGGCAAACTAATTGTTGAAG...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000335049.5
CDS-3UTR CCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGATCCTCCTTTTTGAGATaGTCTGAGGATATCCTGTTA +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRSSFLR*SEDILL
Trigger: TAACAGGATATCCTCAGACCATCTCAAAAAGGAGGA...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000395777.6
CDS-3UTR CCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGACTTTTGTCATGTTCATaGCAGGTACATGACACTAGT +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRLLSCS*QVHDTS
Trigger: ACTAGTGTCATGTACCTGCCATGAACATGACAAAAG...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAATGTTTCAGTTCTCTTaGGAGTCCAAGCTAAATGAA +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKMFQFS*ESKLNE
Trigger: TTCATTTAGCTTGGACTCTCAAGAGAACTGAAACAT...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGAATGTTTCAGTTCTCTTaGGAGTCCAAGCTAAATGAA +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRMFQFS*ESKLNE
Trigger: TTCATTTAGCTTGGACTCTCAAGAGAACTGAAACAT...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR TCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGACTTGTTTCTGTCTTCTaGTTGATACAGACTAACACA +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRLVSVF*LIQTNT
Trigger: TGTGTTAGTCTGTATCAATCAGAAGACAGAAACAAG...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAACTTCAACAATTAGTTTaGCATCTTCAGTCTCTCCAT +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKLQQLV*HLQSLH
Trigger: ATGGAGAGACTGAAGATGGCAAACTAATTGTTGAAG...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGACTTCAACAATTAGTTTaGCATCTTCAGTCTCTCCAT +
Preference number: 4 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRLQQLV*HLQSLH
Trigger: ATGGAGAGACTGAAGATGGCAAACTAATTGTTGAAG...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR GCA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAATACTTAGTGGCCATTTaGATTCTCTCTTCTGTGATT +
Preference number: 4 (lower is better)
Translates to: VISESIDYVSVLLRVQAKYLVAI*ILSSVI
Trigger: AATCACAGAAGAGAGAATGCAAATGGCCACTAAGTA...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
3UTR CAA 72 bp TCTCTTATACATTTCAGTCTATTGAAGACTAACCTTTaGTCATGTTCATGGCAGGTACATGACACTAGTTTT +
Preference number: 4 (lower is better)
Translates to: SLIHFSLLKTNL*SCSWQVHDTSF
Trigger: AAAACTAGTGTCATGTACCTGCCATGAACATGACAAAAGGTTAGTCTTCAATAGACTGAAATGTATAAGAGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS CCA 90 bp CGGGCGCAGGGGCGGCGCCTGTCTCCTCCCAGAGCATGGCTCAGCTaGGCGCTTGCAGTGCCCCCGACGCGATCAGCGATCCTGGAGCCC +
Preference number: 5 (lower is better)
Translates to: RAQGRRLSPPRAWLS*ALAVPPTRSAILEP
Trigger: GGGCTCCAGGATCGCTGATCGCGTCGGGGGCACTGCAAGCGCCCAGCTGAGCCATGCTCTGGGAGGAGACAGGCGCCGCCCCTGCGCCCG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS CCA 90 bp CACCATCGTTGTTCGGCTGAACTTGCTTCGCGGTTTGTTCTCGGCTaGGTCAGGAACTCTGGTAGAGGGAAACCAGTGCCCTGTCTCTGC +
Preference number: 5 (lower is better)
Translates to: HHRCSAELASRFVLG*VRNSGRGKPVPCLC
Trigger: GCAGAGACAGGGCACTGGTTTCCCTCTACCAGAGTTCCTGACCCAGCCGAGAACAAACCGCGAAGCAAGTTCAGCCGAACAACGATGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000395777.6
ENST00000512591.1
CDS-3UTR CAA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCACAGCGTGTCATTCCTTaGCTGGAGAAGACGTCTGAT +
Preference number: 5 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPQRVIP*LEKTSD
Trigger: ATCAGACGTCTTCTCCAGCAAAGGAATGACACGCTG...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp GCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCCAACTACTGAGCCATGCCTGAGCTTTGTCTaGTGCAGTCTCGTCACACAA +
Preference number: 5 (lower is better)
Translates to: AGCTLIQRTLLGWPTTEPCLSFV*CSLVTQ
Trigger: TTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCA...TGGCTCAGTAGTTGGCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCTTTCTGCAGTGCTGGTaGCCTGTAGGGTGCAGCTTT +
Preference number: 5 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGFLQCW*PVGCSF
Trigger: AAAGCTGCACCCTACAGGCAACCAGCACTGCAGAAA...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGCTCAGGACATGGCAGTaGACTTCCCCCAGAGCAAGT +
Preference number: 5 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWLRTWQ*TSPRAS
Trigger: ACTTGCTCTGGGGGAAGTCAACTGCCATGTCCTGAG...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CAA 90 bp CTCTCCATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGTTGTTCGGCTGAACTaGCTTCGCGGTTTGTTCTCG +
Preference number: 5 (lower is better)
Translates to: LSISSLQLGAHSYRGPCWVVRLN*LRGLFS
Trigger: CGAGAACAAACCGCGAAGCAAGTTCAGCCGAACAAC...CCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAATGGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CAA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCGGCTCAGCTGGGCGCTaGCAGTGCCCCCGACGCGAT +
Preference number: 5 (lower is better)
Translates to: PYVTSATTALLYPLYSFSGSAGR*QCPRRD
Trigger: ATCGCGTCGGGGGCACTGCAAGCGCCCAGCTGAGCC...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS CCA 90 bp CACCAGAGCTGCTTCACTCATGGTTCTATAGAGCACTGGGGAGTCTaGTTCATCCTTTGCATGTGGCTTCAGGGTGTTGCTGTGATAAGA +
Preference number: 5 (lower is better)
Translates to: HQSCFTHGSIEHWGV*FILCMWLQGVAVIR
Trigger: TCTTATCACAGCAACACCCTGAAGCCACATGCAAAGGATGAACCAGACTCCCCAGTGCTCTATAGAACCATGAGTGAAGCAGCTCTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS CCA 90 bp CCTTTTTCTCACCAGAGCTGCTTCACTCATGGTTCTATAGAGCACTaGGGAGTCTGGTTCATCCTTTGCATGTGGCTTCAGGGTGTTGCT +
Preference number: 5 (lower is better)
Translates to: PFSHQSCFTHGSIEH*GVWFILCMWLQGVA
Trigger: AGCAACACCCTGAAGCCACATGCAAAGGATGAACCAGACTCCCCAGTGCTCTATAGAACCATGAGTGAAGCAGCTCTGGTGAGAAAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp CTCCTAATCCCAACAGTGCCTCGAACAGAACCCGTGACTCCTTCTTTGTGCTTACAGCGTGTCATTCCTTaGCTGGAGAAGACGTCTGAT +
Preference number: 5 (lower is better)
Translates to: LLIPTVPRTEPVTPSLCLQRVIP*LEKTSD
Trigger: ATCAGACGTCTTCTCCAGCAAAGGAATGACACGCTG...TAAGCACAAAGAAGGAGTCACGGGTTCTGTTCGAGGCACTGTTGGGATTAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp ATTTCTTCTCTTCAGCTGGGTGCACACTCATACAGAGGACCCTGCTGGGCTGGCTACAGACTAACACAGTaGTTCACTGTTAAGATACGA +
Preference number: 5 (lower is better)
Translates to: ISSLQLGAHSYRGPCWAGYRLTQ*FTVKIR
Trigger: TCGTATCTTAACAGTGAACAACTGTGTTAGTCTGTA...GCCAGCCCAGCAGGGTCCTCTGTATGAGTGTGCACCCAGCTGAAGAGAAGAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp GGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTCTTCCCCCGTGACTCCTTCTTaGTGCTTACCCTTTGGCAAA +
Preference number: 5 (lower is better)
Translates to: GGSHSDFYDLLQSLTVSSPVTPS*CLPFGK
Trigger: TTTGCCAAAGGGTAAGCACAAAGAAGGAGTCACGGG...GGAAGAGACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CAA 90 bp TGTGCAGTCTCGTCACACAAAGTTATGCTAGGTTCCTGCAAAGTAGGTCCCTCCTTTTCCTTCACTACTTaGCCTGGAGTGGTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: CAVSSHKVMLGSCKVGPSFSFTT*PGVVSA
Trigger: TGCAGAAACCACTCCAGGCAAAGTAGTGAAGGAAAA...GGAGGGACCTACTTTGCAGGAACCTAGCATAACTTTGTGTGACGAGACTGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS GCA 90 bp AGGAAAATGCGAGCATTCTTTTCAGAAGGTCCCTGTAGGAGCCTCTaGAGTAGCGGAATGTCTGTCTTCTTTAGTCGTCTTTGTTCTCCT +
Preference number: 5 (lower is better)
Translates to: RKMRAFFSEGPCRSL*SSGMSVFFSRLCSP
Trigger: AGGAGAACAAAGACGACTAAAGAAGACAGACATTCCGCTACTGCAGAGGCTCCTACAGGGACCTTCTGAAAAGAATGCTCGCATTTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCCCTTCAACAATTAGTTaGCCATCTTCAGTCTCTCCA +
Preference number: 5 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCPSTIS*PSSVSP
Trigger: TGGAGAGACTGAAGATGGCAAACTAATTGTTGAAGG...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCGGTAGAACTCTGTGCTaGCATGTGCTTGTTACTTTT +
Preference number: 5 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCGRTLC*HVLVTF
Trigger: AAAAGTAACAAGCACATGCAAGCACAGAGTTCTACC...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CAA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCTTTCTGCAGTGCTGGTaGCCTGTAGGGTGCAGCTTT +
Preference number: 5 (lower is better)
Translates to: PYVTSATTALLYPLYSFSFLQCW*PVGCSF
Trigger: AAAGCTGCACCCTACAGGCAACCAGCACTGCAGAAA...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATAAACTTGCTTCGCGGTTaGTTCTCGGCTGGGTCAGGA +
Preference number: 5 (lower is better)
Translates to: GICGPSLTLADVICLCDINLLRG*FSAGSG
Trigger: TCCTGACCCAGCCGAGAACAAACCGCGAAGCAAGTT...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000395777.6
CDS-3UTR CAA 90 bp GAGCAAGGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCCCTTCAACAATTAGTTaGCCATCTTCAGTCTCTCCA +
Preference number: 5 (lower is better)
Translates to: EQGGSHSDFYDLLQSLTVPSTIS*PSSVSP
Trigger: TGGAGAGACTGAAGATGGCAAACTAATTGTTGAAGG...GACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCCTTGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CAA 90 bp CTGAGCCACTTGCCTGAGCTTTGTCTTGTGCAGTCTCGTCACACAAAGTTATGCGCCTTGCTTTATCCATaGTATTCATTCAGCAACAAA +
Preference number: 5 (lower is better)
Translates to: LSHLPELCLVQSRHTKLCALLYP*YSFSNK
Trigger: TTTGTTGCTGAATGAATACAATGGATAAAGCAAGGC...GCATAACTTTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCAAGTGGCTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGTCAGCTACAACAGCCTaGCTTTATCCATTGTATTCA +
Preference number: 5 (lower is better)
Translates to: AKRAEFGIPYVTSATTALSATTA*LYPLYS
Trigger: TGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGA...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGTTGAAGACTAACCTTTaGTCATGTTCATGGCAGGTA +
Preference number: 5 (lower is better)
Translates to: AKRAEFGIPYVTSATTALLKTNL*SCSWQV
Trigger: TACCTGCCATGAACATGACAAAAGGTTAGTCTTCAA...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGATACTTAGTGGCCATTaGCATTCTCTCTTCTGTGAT +
Preference number: 5 (lower is better)
Translates to: AKRAEFGIPYVTSATTALILSGH*HSLFCD
Trigger: ATCACAGAAGAGAGAATGCAAATGGCCACTAAGTAT...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCCAACTACTGAGCCACTaGCCTGAGCTTTGTCTTGTG +
Preference number: 5 (lower is better)
Translates to: PYVTSATTALLYPLYSFSQLLSH*PELCLV
Trigger: CACAAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTG...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAAACTTGCTTCGCGGTTaGTTCTCGGCTGGGTCAGGA +
Preference number: 5 (lower is better)
Translates to: VISESIDYVSVLLRVQAKNLLRG*FSAGSG
Trigger: TCCTGACCCAGCCGAGAACAAACCGCGAAGCAAGTT...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000395777.6
CDS-3UTR CAA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATAGTTGTTCGGCTGAACTaGCTTCGCGGTTTGTTCTCG +
Preference number: 5 (lower is better)
Translates to: GICGPSLTLADVICLCDIVVRLN*LRGLFS
Trigger: CGAGAACAAACCGCGAAGCAAGTTCAGCCGAACAAC...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000395777.6
CDS-3UTR CAA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACAGCGTGTCATTCCTTaGCTGGAGAAGACGTCTGAT +
Preference number: 5 (lower is better)
Translates to: FIQQQIGICGPSLTLADVQRVIP*LEKTSD
Trigger: ATCAGACGTCTTCTCCAGCAAAGGAATGACACGCTG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp GGAGGAAGCCACAGTGACTTTTATGACCTACTTCAAAGTCTCACAGTCTCTTCCTCAGCTACAACAGCCTaGCTTTATCCATTGTATTCA +
Preference number: 5 (lower is better)
Translates to: GGSHSDFYDLLQSLTVSSSATTA*LYPLYS
Trigger: TGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGA...GGAAGAGACTGTGAGACTTTGAAGTAGGTCATAAAAGTCACTGTGGCTTCCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CAA 90 bp GCTAAGAGGGCAGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGTACAGACTAACACAGTaGTTCACTGTTAAGATACGA +
Preference number: 5 (lower is better)
Translates to: AKRAEFGIPYVTSATTALYRLTQ*FTVKIR
Trigger: TCGTATCTTAACAGTGAACAACTGTGTTAGTCTGTA...CAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCTGCCCTCTTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATACTTTGTGCTTACCCTTaGGCAAAGCCCCAAGTCCCT +
Preference number: 5 (lower is better)
Translates to: GICGPSLTLADVICLCDILCAYP*AKPQVP
Trigger: AGGGACTTGGGGCTTTGCCAAAGGGTAAGCACAAAG...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACCCGTGACTCCTTCTTaGTGCTTACCCTTTGGCAAA +
Preference number: 5 (lower is better)
Translates to: FIQQQIGICGPSLTLADVPVTPS*CLPFGK
Trigger: TTTGCCAAAGGGTAAGCACAAAGAAGGAGTCACGGG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp TTCATTCAGCAACAAATAGGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTACAACTACTGAGCCACTaGCCTGAGCTTTGTCTTGTG +
Preference number: 5 (lower is better)
Translates to: FIQQQIGICGPSLTLADVQLLSH*PELCLV
Trigger: CACAAGACAAAGCTCAGGCAAGTGGCTCAGTAGTTG...TACATCGGCTAAAGTAAGACTTGGCCCACAAATACCTATTTGTTGCTGAATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS TCA 90 bp CTGTGCTTCCTGAGTTTGTATTACTTCTGCTTCTTGGAGACTTGCTaGAAAATGTTCATGGTTCCAATTAAGCAGCCACTGAGCTGCTTA +
Preference number: 5 (lower is better)
Translates to: LCFLSLYYFCFLETC*KMFMVPIKQPLSCL
Trigger: TAAGCAGCTCAGTGGCTGCTTAATTGGAACCATGAACATTTTTCAGCAAGTCTCCAAGAAGCAGAAGTAATACAAACTCAGGAAGCACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000512591.1
CDS-3UTR CAA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATATGCCTGAGCTTTGTCTaGTGCAGTCTCGTCACACAA +
Preference number: 5 (lower is better)
Translates to: GICGPSLTLADVICLCDICLSFV*CSLVTQ
Trigger: TTGTGTGACGAGACTGCACAAGACAAAGCTCAGGCA...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp CCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTGTATTCATTCAGCTTTTCCTTCACTACTTaGCCTGGAGTGGTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: PYVTSATTALLYPLYSFSFSFTT*PGVVSA
Trigger: TGCAGAAACCACTCCAGGCAAAGTAGTGAAGGAAAA...GCTGAATGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTCCTTCAACAATTAGTTaGCCATCTTCAGTCTCTCCA +
Preference number: 5 (lower is better)
Translates to: RVWDSLCNFSYNSLALSIPSTIS*PSSVSP
Trigger: TGGAGAGACTGAAGATGGCAAACTAATTGTTGAAGG...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAACAGCGTGTCATTCCTTaGCTGGAGAAGACGTCTGAT +
Preference number: 5 (lower is better)
Translates to: VISESIDYVSVLLRVQAKQRVIP*LEKTSD
Trigger: ATCAGACGTCTTCTCCAGCAAAGGAATGACACGCTG...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp GTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCACATACTTAGTGGCCATTaGCATTCTCTCTTCTGTGAT +
Preference number: 5 (lower is better)
Translates to: VLRWHVSYYFTVSQLHIHILSGH*HSLFCD
Trigger: ATCACAGAAGAGAGAATGCAAATGGCCACTAAGTAT...GTGAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTATTTTTACCAGAAGTTaGAGTCCCCATCTCATGGTG +
Preference number: 5 (lower is better)
Translates to: RVWDSLCNFSYNSLALSIIFTRS*SPHLMV
Trigger: CACCATGAGATGGGGACTCAAACTTCTGGTAAAAAT...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAGCCATCTTCAGTCAGTaGCCTTGTGACCAGAATGAG +
Preference number: 5 (lower is better)
Translates to: VISESIDYVSVLLRVQAKAIFSQ*PCDQNE
Trigger: CTCATTCTGGTCACAAGGCAACTGACTGAAGATGGC...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000335049.5
CDS-3UTR CAA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCATCTTTTCCTCCTTTTaGAGATGGTCTGAGGATATC +
Preference number: 5 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFIFSSF*RWSEDI
Trigger: GATATCCTCAGACCATCTCAAAAAGGAGGAAAAGAT...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCGCAACAAATAGGTATTaGTGGGCCAAGTCTTACTTT +
Preference number: 5 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFATNRY*WAKSYF
Trigger: AAAGTAAGACTTGGCCCACAAATACCTATTTGTTGC...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAAGCAACAAATAGGTATTaGTGGGCCAAGTCTTACTTT +
Preference number: 5 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQATNRY*WAKSYF
Trigger: AAAGTAAGACTTGGCCCACAAATACCTATTTGTTGC...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp TTGTACTTCGGTGGCATGTCAGTTATTATTTTACTGTCTCTCAGCTCCACATTCTTGAAGACTAACCTTTaGTCATGTTCATGGCAGGTA +
Preference number: 5 (lower is better)
Translates to: LYFGGMSVIILLSLSSTFLKTNL*SCSWQV
Trigger: TACCTGCCATGAACATGACAAAAGGTTAGTCTTCAA...GAATGTGGAGCTGAGAGACAGTAAAATAATAACTGACATGCCACCGAAGTACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp TTTTTCCTTTCCAAAGGCCAGACAGCTCTGATGTTACAGATAGTCAGAAGTCAATTGAAGACTAACCTTTaGTCATGTTCATGGCAGGTA +
Preference number: 5 (lower is better)
Translates to: FFLSKGQTALMLQIVRSQLKTNL*SCSWQV
Trigger: TACCTGCCATGAACATGACAAAAGGTTAGTCTTCAA...TTGACTTCTGACTATCTGTAACATCAGAGCTGTCTGGCCTTTGGAAAGGAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp AGAGTTTGGGATTCCCTATGTAACTTCAGCTACAACAGCCTTGCTTTATCCATTCTGACAATGAAATATTaGGACCACCTAAAACAAGGA +
Preference number: 5 (lower is better)
Translates to: RVWDSLCNFSYNSLALSILTMKY*DHLKQG
Trigger: TCCTTGTTTTAGGTGGTCCAAATATTTCATTGTCAG...AATGGATAAAGCAAGGCTGTTGTAGCTGAAGTTACATAGGGAATCCCAAACTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS-3UTR CAA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAAATTTTTACCAGAAGTTaGAGTCCCCATCTCATGGTG +
Preference number: 5 (lower is better)
Translates to: VISESIDYVSVLLRVQAKIFTRS*SPHLMV
Trigger: CACCATGAGATGGGGACTCAAACTTCTGGTAAAAAT...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000307439.10
ENST00000342081.7
CDS-3UTR CAA 90 bp GTCATTTCTGAATCCATTGATTATGTTTCAGTTCTCTTGAGAGTCCAAGCTAAACCTTCAACAATTAGTTaGCCATCTTCAGTCAGTTGC +
Preference number: 5 (lower is better)
Translates to: VISESIDYVSVLLRVQAKPSTIS*PSSVSC
Trigger: GCAACTGACTGAAGATGGCAAACTAATTGTTGAAGG...TTTAGCTTGGACTCTCAAGAGAACTGAAACATAATCAATGGATTCAGAAATGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000335049.5
CDS-3UTR CAA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGAGCAACAAATAGGTATTaGTGGGCCAAGTCTTACTTT +
Preference number: 5 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRATNRY*WAKSYF
Trigger: AAAGTAAGACTTGGCCCACAAATACCTATTTGTTGC...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp GGTATTTGTGGGCCAAGTCTTACTTTAGCCGATGTAATATGTCTATGTGATATAGCCTTGCTTTATCCATaGTATTCATTCAGCAACAAA +
Preference number: 5 (lower is better)
Translates to: GICGPSLTLADVICLCDIALLYP*YSFSNK
Trigger: TTTGTTGCTGAATGAATACAATGGATAAAGCAAGGC...TATATCACATAGACATATTACATCGGCTAAAGTAAGACTTGGCCCACAAATACC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS-3UTR CAA 90 bp CTATCAGGTAGATTCCTTGATGGTGTAAGACTGTATTTCTTTTTCATTCCAAGATCAGCTACAACAGCCTaGCTTTATCCATTGTATTCA +
Preference number: 5 (lower is better)
Translates to: LSGRFLDGVRLYFFFIPRSATTA*LYPLYS
Trigger: TGAATACAATGGATAAAGCAAGGCTGTTGTAGCTGA...TCTTGGAATGAAAAAGAAATACAGTCTTACACCATCAAGGAATCTACCTGATAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS CCA 72 bp CGGGCGCAGGGGCGGCGCCTGTCTCCTCCCAGAGCATaGCTCAGCTGGGCGCTTGCAGTGCCCCCGACGCGA +
Preference number: 6 (lower is better)
Translates to: RAQGRRLSPPRA*LSWALAVPPTR
Trigger: TCGCGTCGGGGGCACTGCAAGCGCCCAGCTGAGCCATGCTCTGGGAGGAGACAGGCGCCGCCCCTGCGCCCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS CCA 72 bp GGGCGGCGCCTGTCTCCTCCCAGAGCATGGCTCAGCTaGGCGCTTGCAGTGCCCCCGACGCGATCAGCGATC +
Preference number: 6 (lower is better)
Translates to: GRRLSPPRAWLS*ALAVPPTRSAI
Trigger: GATCGCTGATCGCGTCGGGGGCACTGCAAGCGCCCAGCTGAGCCATGCTCTGGGAGGAGACAGGCGCCGCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS GCA 72 bp CTCCTCCCAGAGCATGGCTCAGCTGGGCGCTTGCAGTaGCCCCGACGCGATCAGCGATCCTGGAGCCCCAGG +
Preference number: 6 (lower is better)
Translates to: LLPEHGSAGRLQ*PRRDQRSWSPR
Trigger: CCTGGGGCTCCAGGATCGCTGATCGCGTCGGGGGCACTGCAAGCGCCCAGCTGAGCCATGCTCTGGGAGGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS GCA 72 bp CCTGTCTCCTCCCAGAGCATGGCTCAGCTGGGCGCTTaGAGTGCCCCCGACGCGATCAGCGATCCTGGAGCC +
Preference number: 6 (lower is better)
Translates to: PVSSQSMAQLGA*SAPDAISDPGA
Trigger: GGCTCCAGGATCGCTGATCGCGTCGGGGGCACTGCAAGCGCCCAGCTGAGCCATGCTCTGGGAGGAGACAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS CAA 72 bp GCCTGTCTCCTCCCAGAGCATGGCTCAGCTGGGCGCTaGCAGTGCCCCCGACGCGATCAGCGATCCTGGAGC +
Preference number: 6 (lower is better)
Translates to: ACLLPEHGSAGR*QCPRRDQRSWS
Trigger: GCTCCAGGATCGCTGATCGCGTCGGGGGCACTGCAAGCGCCCAGCTGAGCCATGCTCTGGGAGGAGACAGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000342081.7
CDS GCA 72 bp TCGGCTGGGTCAGGAACTCTGGTAGAGGGAAACCAGTaGCCTGTCTCTGCCGGGCTGGGACTCCGCGAGTCA +
Preference number: 6 (lower is better)
Translates to: SAGSGTLVEGNQ*PVSAGLGLRES
Trigger: TGACTCGCGGAGTCCCAGCCCGGCAGAGACAGGGCACTGGTTTCCCTCTACCAGAGTTCCTGACCCAGCCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307439.10
CDS CCA 72 bp TGTTCGGCTGAACTTGCTTCGCGGTTTGTTCTCGGCTaGGTCAGGAACTCTGGTAGAGGGAAACCAGTGCCC +
Preference number: 6 (lower is better)
Translates to: CSAELASRFVLG*VRNSGRGKPVP
Trigger: GGGCACTGGTTTCCCTCTACCAGAGTTCCTGACCCAGCCGAGAACAAACCGCGAAGCAAGTTCAGCCGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000395777.6
ENST00000512591.1
CDS CAA 90 bp ACTGTGAGCAGGAGGACCCTTTTCACCATCGTTGTTCGGCTGAACTaGCTTCGCGGTTTGTTCTCGGCTGGGTCAGGAACTCTGGTAGAG +
Preference number: 6 (lower is better)
Translates to: TVSRRTLFTIVVRLN*LRGLFSAGSGTLVE
Trigger: CTCTACCAGAGTTCCTGACCCAGCCGAGAACAAACCGCGAAGCAAGTTCAGCCGAACAACGATGGTGAAAAGGGTCCTCCTGCTCACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000395777.6
ENST00000512591.1
CDS CAA 72 bp AGGAGGACCCTTTTCACCATCGTTGTTCGGCTGAACTaGCTTCGCGGTTTGTTCTCGGCTGGGTCAGGAACT +
Preference number: 6 (lower is better)
Translates to: RRTLFTIVVRLN*LRGLFSAGSGT
Trigger: AGTTCCTGACCCAGCCGAGAACAAACCGCGAAGCAAGTTCAGCCGAACAACGATGGTGAAAAGGGTCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000395777.6
ENST00000512591.1
CDS CCA 72 bp CACCAGAGCTGCTTCACTCATGGTTCTATAGAGCACTaGGGAGTCTGGTTCATCCTTTGCATGTGGCTTCAG +
Preference number: 6 (lower is better)
Translates to: HQSCFTHGSIEH*GVWFILCMWLQ
Trigger: CTGAAGCCACATGCAAAGGATGAACCAGACTCCCCAGTGCTCTATAGAACCATGAGTGAAGCAGCTCTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS CCA 72 bp TGCTTCACTCATGGTTCTATAGAGCACTGGGGAGTCTaGTTCATCCTTTGCATGTGGCTTCAGGGTGTTGCT +
Preference number: 6 (lower is better)
Translates to: CFTHGSIEHWGV*FILCMWLQGVA
Trigger: AGCAACACCCTGAAGCCACATGCAAAGGATGAACCAGACTCCCCAGTGCTCTATAGAACCATGAGTGAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS TCA 72 bp TTGAGATGGTCTGAGGATATCCTGTTATTCACACTGTaGGCAGGAGGACCCTTTTCACCATCGTTGTTCGGC +
Preference number: 6 (lower is better)
Translates to: LRWSEDILLFTL*AGGPFSPSLFG
Trigger: GCCGAACAACGATGGTGAAAAGGGTCCTCCTGCTCACAGTGTGAATAACAGGATATCCTCAGACCATCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000395777.6
ENST00000512591.1
CDS GCA 72 bp CATCATCAGAGGCTTCATCCTTTTTCTCACCAGAGCTaGTTCACTCATGGTTCTATAGAGCACTGGGGAGTC +
Preference number: 6 (lower is better)
Translates to: HHQRLHPFSHQS*FTHGSIEHWGV
Trigger: GACTCCCCAGTGCTCTATAGAACCATGAGTGAAGCAGCTCTGGTGAGAAAAAGGATGAAGCCTCTGATGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS GCA 72 bp CGAGCATTCTTTTCAGAAGGTCCCTGTAGGAGCCTCTaGAGTAGCGGAATGTCTGTCTTCTTTAGTCGTCTT +
Preference number: 6 (lower is better)
Translates to: RAFFSEGPCRSL*SSGMSVFFSRL
Trigger: AAGACGACTAAAGAAGACAGACATTCCGCTACTGCAGAGGCTCCTACAGGGACCTTCTGAAAAGAATGCTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS CAA 90 bp CTTCACTCATGGTTCTATAGAGCACTGGGGAGTCTGGTTCATCCTTaGCATGTGGCTTCAGGGTGTTGCTGTGATAAGATAAATAGTCTT +
Preference number: 6 (lower is better)
Translates to: LHSWFYRALGSLVHP*HVASGCCCDKINSL
Trigger: AAGACTATTTATCTTATCACAGCAACACCCTGAAGCCACATGCAAAGGATGAACCAGACTCCCCAGTGCTCTATAGAACCATGAGTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000307439.10
ENST00000335049.5
ENST00000342081.7
ENST00000395777.6
CDS CAA 72 bp CCCCAGAAAATGTCCAGCATTCCTTCAACAATTAGTTaGCCATCTTCAGTCAGTTGCCTTGTGACCAGAATG +
Preference number: 6 (lower is better)
Translates to: PQKMSSIPSTIS*PSSVSCLVTRM
Trigger: CATTCTGGTCACAAGGCAACTGACTGAAGATGGCAAACTAATTGTTGAAGGAATGCTGGACATTTTCTGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000335049.5
CDS TCA 72 bp CTGAGTTTGTATTACTTCTGCTTCTTGGAGACTTGCTaGAAAATGTTCATGGTTCCAATTAAGCAGCCACTG +
Preference number: 6 (lower is better)
Translates to: LSLYYFCFLETC*KMFMVPIKQPL
Trigger: CAGTGGCTGCTTAATTGGAACCATGAACATTTTTCAGCAAGTCTCCAAGAAGCAGAAGTAATACAAACTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000512591.1
CDS GCA 72 bp CCCAGAAAATGTCCAGCATTCCTTCAACAATTAGTTTaGCATCTTCAGTCTCTCCATATAAAATATGCAGAT +
Preference number: 6 (lower is better)
Translates to: PRKCPAFLQQLV*HLQSLHIKYAD
Trigger: ATCTGCATATTTTATATGGAGAGACTGAAGATGGCAAACTAATTGTTGAAGGAATGCTGGACATTTTCTGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000307439.10
ENST00000342081.7
ENST00000395777.6
CDS GCA 72 bp AAAATGTTCATGGTTCCAATTAAGCAGCCACTGAGCTaGTTAGTGACAACAACATTAAGAACAACATTTCAT +
Preference number: 6 (lower is better)
Translates to: KMFMVPIKQPLS*LVTTTLRTTFH
Trigger: ATGAAATGTTGTTCTTAATGTTGTTGTCACTAAGCAGCTCAGTGGCTGCTTAATTGGAACCATGAACATTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000512591.1