Pregenerated sensors for RALGAPA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000174373Ensembl transcript IDs: ENST00000382366.7, ENST00000553892.2, ENST00000553917.5, ENST00000554259.6, ENST00000554652.5, ENST00000554704.5, ENST00000556106.1, ENST00000556837.1, ENST00000557638.1, ENST00000637992.1, ENST00000680220.1
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGTTACCCAGGTTGGAGTACAGTGGCAGCACGACCTCAGTTCACTaGAACCTCCACATCCCAGGTTTAAGTAATTTTCCTGCCTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: LLPRLEYSGSTTSVH*NLHIPGLSNFPASA Trigger: GGCTGAGGCAGGAAAATTACTTAAACCTGGGATGTGGAGGTTGCAGTGAACTGAGGTCGTGCTGCCACTGTACTCCAACCTGGGTAACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554652.5 |
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| CDS CCA 90 bp | CAGATCCCTCAGTGGAGCCTCTGGTGGCATTCTGTTCTGCCTCTGTaGGGAAACATTTGCCTTCGGCTTCGAAAGAGCATGTACAACAGT | + |
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Preference number: 5 (lower is better) Translates to: QIPQWSLWWHSVLPL*GNICLRLRKSMYNS Trigger: ACTGTTGTACATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCAGAGGCTCCACTGAGGGATCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CCA 90 bp | ATGGATCAGAACAGGAGCACTTTTAGCACTGCGTATATAGGCCGATaGCAGAGCACATTCACCAATGGATCGGCTTCTCATGGCGACAGT | + |
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Preference number: 5 (lower is better) Translates to: MDQNRSTFSTAYIGR*QSTFTNGSASHGDS Trigger: ACTGTCGCCATGAGAAGCCGATCCATTGGTGAATGTGCTCTGCCATCGGCCTATATACGCAGTGCTAAAAGTGCTCCTGTTCTGATCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000553892.2 ENST00000554259.6 ENST00000554652.5 ENST00000680220.1 |
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| CDS CCA 90 bp | AAAATAGCCCATTACATGACTGTACAGATCCCTCAGTGGAGCCTCTaGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATTTGCCTTCGG | + |
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Preference number: 5 (lower is better) Translates to: KIAHYMTVQIPQWSL*WHSVLPLWGNICLR Trigger: CCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCAGAGGCTCCACTGAGGGATCTGTACAGTCATGTAATGGGCTATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS TCA 90 bp | CTAGTTATTGAAGAAGCCTCTGTGGAACTCTGCAAGCTTGGTGCATaGCGGGATGAACTGTCAATGACAGGAACTGCACCTTTGGCTCGT | + |
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Preference number: 5 (lower is better) Translates to: LVIEEASVELCKLGA*RDELSMTGTAPLAR Trigger: ACGAGCCAAAGGTGCAGTTCCTGTCATTGACAGTTCATCCCGTCATGCACCAAGCTTGCAGAGTTCCACAGAGGCTTCTTCAATAACTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000553917.5 ENST00000637992.1 ENST00000680220.1 |
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| CDS GCA 90 bp | TGGAGCCTCTGGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATTTaGCTTCGGCTTCGAAAGAGCATGTACAACAGTTTTATAAACGCC | + |
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Preference number: 5 (lower is better) Translates to: WSLWWHSVLPLWGNI*LRLRKSMYNSFINA Trigger: GGCGTTTATAAAACTGTTGTACATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCAGAGGCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS TCA 90 bp | TCTACTATGAGTATCAGTGATGTGGCTTTCAGTGGATCTAGTTATTaGAGAAGCCTCTGTGGAACTCTGCAAGCTTGGTGCATGACGGGA | + |
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Preference number: 5 (lower is better) Translates to: STMSISDVAFSGSSY*RSLCGTLQAWCMTG Trigger: TCCCGTCATGCACCAAGCTTGCAGAGTTCCACAGAGGCTTCTTCAATAACTAGATCCACTGAAAGCCACATCACTGATACTCATAGTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000553917.5 ENST00000637992.1 ENST00000680220.1 |
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| CDS GCA 90 bp | GTAATATGGTGGTGGGAATCTCTGTGGATTCCTTCACTGTTTTGCTaGTTACTGATGCAGTACCAAGTGTATCTAGAGGTCTGTACACAC | + |
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Preference number: 5 (lower is better) Translates to: VIWWWESLWIPSLFC*LLMQYQVYLEVCTH Trigger: GTGTGTACAGACCTCTAGATACACTTGGTACTGCATCAGTAAGCAGCAAAACAGTGAAGGAATCCACAGAGATTCCCACCACCATATTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS GCA 90 bp | TTTGTAATATGGTGGTGGGAATCTCTGTGGATTCCTTCACTGTTTTaGTGCTTACTGATGCAGTACCAAGTGTATCTAGAGGTCTGTACA | + |
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Preference number: 5 (lower is better) Translates to: FVIWWWESLWIPSLF*CLLMQYQVYLEVCT Trigger: TGTACAGACCTCTAGATACACTTGGTACTGCATCAGTAAGCAGCAAAACAGTGAAGGAATCCACAGAGATTCCCACCACCATATTACAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS TCA 90 bp | GACAAGCTCCTTTTAGTTGGAGAAAGTTTGCTAGTACTTGTAACATaGGGCATTCTGCGGTTAACAGGTGCTTTTAGTGTTGCTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: DKLLLVGESLLVLVT*GILRLTGAFSVAFL Trigger: CAAGAAAGCAACACTAAAAGCACCTGTTAACCGCAGAATGCCTCATGTTACAAGTACTAGCAAACTTTCTCCAACTAAAAGGAGCTTGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CCA 90 bp | GACTACCTAATTGACTACTTGCAATTCCTTCTTTTTGTAATATGGTaGTGGGAATCTCTGTGGATTCCTTCACTGTTTTGCTGCTTACTG | + |
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Preference number: 5 (lower is better) Translates to: DYLIDYLQFLLFVIW*WESLWIPSLFCCLL Trigger: CAGTAAGCAGCAAAACAGTGAAGGAATCCACAGAGATTCCCACCACCATATTACAAAAAGAAGGAATTGCAAGTAGTCAATTAGGTAGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS TCA 72 bp | CCCGTAATCTTGGGAGGCCGAGGCAGGCGGGTCACTTaGGCTCAGAAGCTTAAGACCAGCCTGGGCAACATG | + |
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Preference number: 6 (lower is better) Translates to: PVILGGRGRRVT*AQKLKTSLGNM Trigger: CATGTTGCCCAGGCTGGTCTTAAGCTTCTGAGCTCAAGTGACCCGCCTGCCTCGGCCTCCCAAGATTACGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554652.5 |
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| CDS GCA 72 bp | AGATCCCTCAGTGGAGCCTCTGGTGGCATTCTGTTCTaGCTCTGTGGGGAAACATTTGCCTTCGGCTTCGAA | + |
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Preference number: 6 (lower is better) Translates to: RSLSGASGGILF*LCGETFAFGFE Trigger: TTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCAGAGGCTCCACTGAGGGATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS TCA 72 bp | CTCTGTGGAACTCTGCAAGCTTGGTGCATGACGGGATaGACTGTCAATGACAGGAACTGCACCTTTGGCTCG | + |
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Preference number: 6 (lower is better) Translates to: LCGTLQAWCMTG*TVNDRNCTFGS Trigger: CGAGCCAAAGGTGCAGTTCCTGTCATTGACAGTTCATCCCGTCATGCACCAAGCTTGCAGAGTTCCACAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000553917.5 ENST00000637992.1 ENST00000680220.1 |
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| CDS TCA 72 bp | ACGCCACCCAGGGAGCCCTGCTGTAGTCCTGCCTCATaGCTTGATGACCTAAGAGTACTACGACTACCTAAT | + |
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Preference number: 6 (lower is better) Translates to: TPPREPCCSPAS*LDDLRVLRLPN Trigger: ATTAGGTAGTCGTAGTACTCTTAGGTCATCAAGTCATGAGGCAGGACTACAGCAGGGCTCCCTGGGTGGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS TCA 72 bp | GAAGAAGCCTCTGTGGAACTCTGCAAGCTTGGTGCATaGCGGGATGAACTGTCAATGACAGGAACTGCACCT | + |
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Preference number: 6 (lower is better) Translates to: EEASVELCKLGA*RDELSMTGTAP Trigger: AGGTGCAGTTCCTGTCATTGACAGTTCATCCCGTCATGCACCAAGCTTGCAGAGTTCCACAGAGGCTTCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000553917.5 ENST00000637992.1 ENST00000680220.1 |
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| CDS CCA 72 bp | TACATGACTGTACAGATCCCTCAGTGGAGCCTCTGGTaGCATTCTGTTCTGCCTCTTTGGCTCGTTCAACAG | + |
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Preference number: 6 (lower is better) Translates to: YMTVQIPQWSLW*HSVLPLWLVQQ Trigger: CTGTTGAACGAGCCAAAGAGGCAGAACAGAATGCCACCAGAGGCTCCACTGAGGGATCTGTACAGTCATGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000382366.7 |
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| CDS CCA 72 bp | TACATGACTGTACAGATCCCTCAGTGGAGCCTCTGGTaGCATTCTGTTCTGCCTCTGTGGGGAAACATTTGC | + |
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Preference number: 6 (lower is better) Translates to: YMTVQIPQWSLW*HSVLPLWGNIC Trigger: GCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCAGAGGCTCCACTGAGGGATCTGTACAGTCATGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CAA 72 bp | CTATTTGTGCTGGTATGGGTGTTGCTAGTGCTGCTATaGCTGCTACCACTACTAAAGCCACCGAGCTTCCGC | + |
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Preference number: 6 (lower is better) Translates to: LFVLVWVLLVLL*LLPLLKPPSFR Trigger: GCGGAAGCTCGGTGGCTTTAGTAGTGGTAGCAGCAATAGCAGCACTAGCAACACCCATACCAGCACAAATAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CAA 90 bp | TCTGTAGCACTATTTGTGCTGGTATGGGTGTTGCTAGTGCTGCTATaGCTGCTACCACTACTAAAGCCACCGAGCTTCCGCAGTCTCATC | + |
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Preference number: 6 (lower is better) Translates to: SVALFVLVWVLLVLL*LLPLLKPPSFRSLI Trigger: GATGAGACTGCGGAAGCTCGGTGGCTTTAGTAGTGGTAGCAGCAATAGCAGCACTAGCAACACCCATACCAGCACAAATAGTGCTACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CCA 72 bp | CATTACATGACTGTACAGATCCCTCAGTGGAGCCTCTaGTGGCATTCTGTTCTGCCTCTTTGGCTCGTTCAA | + |
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Preference number: 6 (lower is better) Translates to: HYMTVQIPQWSL*WHSVLPLWLVQ Trigger: TTGAACGAGCCAAAGAGGCAGAACAGAATGCCACCAGAGGCTCCACTGAGGGATCTGTACAGTCATGTAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000382366.7 |
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| CDS CCA 72 bp | CATTACATGACTGTACAGATCCCTCAGTGGAGCCTCTaGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATT | + |
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Preference number: 6 (lower is better) Translates to: HYMTVQIPQWSL*WHSVLPLWGNI Trigger: AATGTTTCCCCACAGAGGCAGAACAGAATGCCACCAGAGGCTCCACTGAGGGATCTGTACAGTCATGTAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CAA 90 bp | GTGGAGCCTCTGGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATTaGCCTTCGGCTTCGAAAGAGCATGTACAACAGTTTTATAAACGC | + |
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Preference number: 6 (lower is better) Translates to: VEPLVAFCSASVGKH*PSASKEHVQQFYKR Trigger: GCGTTTATAAAACTGTTGTACATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCAGAGGCTCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CCA 72 bp | AACAGGAGCACTTTTAGCACTGCGTATATAGGCCGATaGCAGAGCACATTCACCAATGGATCGGCTTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: NRSTFSTAYIGR*QSTFTNGSASH Trigger: ATGAGAAGCCGATCCATTGGTGAATGTGCTCTGCCATCGGCCTATATACGCAGTGCTAAAAGTGCTCCTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000553892.2 ENST00000554259.6 ENST00000554652.5 ENST00000680220.1 |
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| CDS CAA 72 bp | CTGGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATTaGCCTTCGGCTTCGAAAGAGCATGTACAACAGTTT | + |
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Preference number: 6 (lower is better) Translates to: LVAFCSASVGKH*PSASKEHVQQF Trigger: AAACTGTTGTACATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS GCA 72 bp | TGGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATTTaGCTTCGGCTTCGAAAGAGCATGTACAACAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: WWHSVLPLWGNI*LRLRKSMYNSF Trigger: AAAACTGTTGTACATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CAA 72 bp | GCCACGGTGCCCAGCCTGATTAAATTCTTTATTGGATaGCTGACGGTGTGGGGTAGCTATAAAGGGCATTAT | + |
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Preference number: 6 (lower is better) Translates to: ATVPSLIKFFIG*LTVWGSYKGHY Trigger: ATAATGCCCTTTATAGCTACCCCACACCGTCAGCAATCCAATAAAGAATTTAATCAGGCTGGGCACCGTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554652.5 |
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| CDS GCA 72 bp | TGGTGGGAATCTCTGTGGATTCCTTCACTGTTTTGCTaGTTACTGATGCAGTACCAAGTGTATCTAGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: WWESLWIPSLFC*LLMQYQVYLEV Trigger: GACCTCTAGATACACTTGGTACTGCATCAGTAAGCAGCAAAACAGTGAAGGAATCCACAGAGATTCCCACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS GCA 72 bp | TGGTGGTGGGAATCTCTGTGGATTCCTTCACTGTTTTaGTGCTTACTGATGCAGTACCAAGTGTATCTAGAG | + |
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Preference number: 6 (lower is better) Translates to: WWWESLWIPSLF*CLLMQYQVYLE Trigger: CTCTAGATACACTTGGTACTGCATCAGTAAGCAGCAAAACAGTGAAGGAATCCACAGAGATTCCCACCACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CAA 90 bp | AGCTCATCAGAAAGGGGAGTGAGAACAATATCAGGCAAGAAGGGTTaGGAAGTATGGATCAGAACAGGAGCACTTTTAGCACTGCGTATA | + |
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Preference number: 6 (lower is better) Translates to: SSSERGVRTISGKKG*EVWIRTGALLALRI Trigger: TATACGCAGTGCTAAAAGTGCTCCTGTTCTGATCCATACTTCCAAACCCTTCTTGCCTGATATTGTTCTCACTCCCCTTTCTGATGAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000553892.2 ENST00000554259.6 ENST00000554652.5 ENST00000680220.1 |
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| CDS CAA 72 bp | GAAAGGGGAGTGAGAACAATATCAGGCAAGAAGGGTTaGGAAGTATGGATCAGAACAGGAGCACTTTTAGCA | + |
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Preference number: 6 (lower is better) Translates to: ERGVRTISGKKG*EVWIRTGALLA Trigger: TGCTAAAAGTGCTCCTGTTCTGATCCATACTTCCAAACCCTTCTTGCCTGATATTGTTCTCACTCCCCTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000553892.2 ENST00000554259.6 ENST00000554652.5 ENST00000680220.1 |
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| CDS CAA 72 bp | ATGGTGGTGGGAATCTCTGTGGATTCCTTCACTGTTTaGCTGCTTACTGATGCAGTACCAAGTGTATCTAGA | + |
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Preference number: 6 (lower is better) Translates to: MVVGISVDSFTV*LLTDAVPSVSR Trigger: TCTAGATACACTTGGTACTGCATCAGTAAGCAGCAAAACAGTGAAGGAATCCACAGAGATTCCCACCACCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CAA 90 bp | TTTTGTAATATGGTGGTGGGAATCTCTGTGGATTCCTTCACTGTTTaGCTGCTTACTGATGCAGTACCAAGTGTATCTAGAGGTCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: FCNMVVGISVDSFTV*LLTDAVPSVSRGLY Trigger: GTACAGACCTCTAGATACACTTGGTACTGCATCAGTAAGCAGCAAAACAGTGAAGGAATCCACAGAGATTCCCACCACCATATTACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CAA 72 bp | TGTAAATGGTACTGTGCTTTCAGTTTCACATTCCAGTaGTTCATTGCTGGTATGGAAGGAGCGACTGACTTT | + |
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Preference number: 6 (lower is better) Translates to: CKWYCAFSFTFQ*FIAGMEGATDF Trigger: AAAGTCAGTCGCTCCTTCCATACCAGCAATGAACAACTGGAATGTGAAACTGAAAGCACAGTACCATTTACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554704.5 |
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| CDS TCA 72 bp | ATATTGCATAAAATACTACAAGTTCACAGAGTCCTCTaGAGCTTAACCCAGTGGACCTCAGGTCAAGAAACT | + |
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Preference number: 6 (lower is better) Translates to: ILHKILQVHRVL*SLTQWTSGQET Trigger: AGTTTCTTGACCTGAGGTCCACTGGGTTAAGCTTCAGAGGACTCTGTGAACTTGTAGTATTTTATGCAATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557638.1 |
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| CDS CAA 72 bp | GGTACTGTGCTTTCAGTTTCACATTCCAGTTGTTCATaGCTGGTATGGAAGGAGCGACTGACTTTTATATAT | + |
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Preference number: 6 (lower is better) Translates to: GTVLSVSHSSCS*LVWKERLTFIY Trigger: ATATATAAAAGTCAGTCGCTCCTTCCATACCAGCAATGAACAACTGGAATGTGAAACTGAAAGCACAGTACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554704.5 |
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| CDS TCA 72 bp | CTTTTAGTTGGAGAAAGTTTGCTAGTACTTGTAACATaGGGCATTCTGCGGTTAACAGGTGCTTTTAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: LLVGESLLVLVT*GILRLTGAFSV Trigger: AACACTAAAAGCACCTGTTAACCGCAGAATGCCTCATGTTACAAGTACTAGCAAACTTTCTCCAACTAAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS CCA 72 bp | ATTGACTACTTGCAATTCCTTCTTTTTGTAATATGGTaGTGGGAATCTCTGTGGATTCCTTCACTGTTTTGC | + |
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Preference number: 6 (lower is better) Translates to: IDYLQFLLFVIW*WESLWIPSLFC Trigger: GCAAAACAGTGAAGGAATCCACAGAGATTCCCACCACCATATTACAAAAAGAAGGAATTGCAAGTAGTCAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000637992.1 ENST00000680220.1 |
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| CDS TCA 72 bp | AAAGCTGAATCTGCAAGTTCTACTGGACCTATTAAATaGCAAAGATGGTCATATATGCTATCACCAACTTCC | + |
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Preference number: 6 (lower is better) Translates to: KAESASSTGPIK*QRWSYMLSPTS Trigger: GGAAGTTGGTGATAGCATATATGACCATCTTTGTCATTTAATAGGTCCAGTAGAACTTGCAGATTCAGCTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000553917.5 ENST00000637992.1 ENST00000680220.1 |
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| CDS CAA 72 bp | TCCATCACCATAGAAGGAGGGCTTTATCAGAGAGCATaGCTCTACATTATGGCAAACTCAAATAATATTTTC | + |
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Preference number: 6 (lower is better) Translates to: SITIEGGLYQRA*LYIMANSNNIF Trigger: GAAAATATTATTTGAGTTTGCCATAATGTAGAGCAATGCTCTCTGATAAAGCCCTCCTTCTATGGTGATGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556106.1 |
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| CDS CAA 72 bp | GAACCAATCAATTCATCAATTCCATTCCACTTAGTTTaGGCTTTCCTACTTTGCAACAGGTACTGGACATTT | + |
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Preference number: 6 (lower is better) Translates to: EPINSSIPFHLV*AFLLCNRYWTF Trigger: AAATGTCCAGTACCTGTTGCAAAGTAGGAAAGCCAAAACTAAGTGGAATGGAATTGATGAATTGATTGGTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556837.1 |
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| CDS CAA 90 bp | GAGAGATTCTGTAAATATCTACCTTTTAAAGTGTTCACTGTACTGTaGGCATGTTATCCTAATCACTCAGACATAAAATCTCTAGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: ERFCKYLPFKVFTVL*ACYPNHSDIKSLEL Trigger: CAGCTCTAGAGATTTTATGTCTGAGTGATTAGGATAACATGCCAACAGTACAGTGAACACTTTAAAAGGTAGATATTTACAGAATCTCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000556106.1 |
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| CDS CAA 72 bp | ATTTATCAAGTTGAGGAAGTTCTCCTTATTCCTACTTaGCTGAGAGTTTTTATCCTAAATGGGTGTTGGATT | + |
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Preference number: 6 (lower is better) Translates to: IYQVEEVLLIPT*LRVFILNGCWI Trigger: AATCCAACACCCATTTAGGATAAAAACTCTCAGCAAAGTAGGAATAAGGAGAACTTCCTCAACTTGATAAAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554704.5 |
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