Pregenerated sensors for RALA (Homo sapiens)
Ensembl gene IDs: ENSG00000006451Ensembl transcript IDs: ENST00000005257.7, ENST00000434466.1, ENST00000436179.1, ENST00000468201.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AAATACCTCAGCCCAGTGAGCAGTCTTTCTAGATACTGGAGCTGGTCTAGGGCAGGGATGAAATGTACTTaGAGGTGTTCCACATCTGGT | + |
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Preference number: 2 (lower is better) Translates to: KYLSPVSSLSRYWSWSRAGMKCT*RCSTSG Trigger: ACCAGATGTGGAACACCTGCAAGTACATTTCATCCC...TGCCCTAGACCAGCTCCAGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| 3UTR-3UTR CAA 90 bp | AAATACCTCAGCCCAGTGAGCAGTCTTTCTAGATACTGGAGCTGGTCTAGGGCATGGGATGAAATGTACTaGCAGGTGTTCCACATCTGG | + |
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Preference number: 3 (lower is better) Translates to: KYLSPVSSLSRYWSWSRAWDEMY*QVFHIW Trigger: CCAGATGTGGAACACCTGCAAGTACATTTCATCCCA...TGCCCTAGACCAGCTCCAGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS-3UTR CCA 90 bp | AAATACCTCAGCCCAGTGAGCAGTCTTTCTAGATACTGGAGCTGGTCTAGGGCACAGGTGTTCCACATCTaGTCTTCAGGAAGGGCCACT | + |
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Preference number: 4 (lower is better) Translates to: KYLSPVSSLSRYWSWSRAQVFHI*SSGRAT Trigger: AGTGGCCCTTCCTGAAGACCAGATGTGGAACACCTG...TGCCCTAGACCAGCTCCAGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS-3UTR CCA 90 bp | AAATACCTCAGCCCAGTGAGCAGTCTTTCTAGATACTGGAGCTGGTCTAGGGCAGCTGGTCTAGGGCAGTaGGATGAAATGTACTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: KYLSPVSSLSRYWSWSRAAGLGQ*DEMYLQ Trigger: CTGCAAGTACATTTCATCCCACTGCCCTAGACCAGC...TGCCCTAGACCAGCTCCAGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS-3UTR TCA 90 bp | AAATACCTCAGCCCAGTGAGCAGTCTTTCTAGATACTGGAGCTGGTCTAGGGCATCTAGGGCAGTGGGATaGAATGTACTTGCAGGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: KYLSPVSSLSRYWSWSRASRAVG*NVLAGV Trigger: AACACCTGCAAGTACATTTCATCCCACTGCCCTAGA...TGCCCTAGACCAGCTCCAGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS-3UTR CCA 90 bp | AAATACCTCAGCCCAGTGAGCAGTCTTTCTAGATACTGGAGCTGGTCTAGGGCAAGTCTTTCTAGATACTaGAGCTGGTCTAGGGCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: KYLSPVSSLSRYWSWSRASLSRY*SWSRAV Trigger: CACTGCCCTAGACCAGCTCCAGTATCTAGAAAGACT...TGCCCTAGACCAGCTCCAGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS-3UTR TCA 90 bp | AAATACCTCAGCCCAGTGAGCAGTCTTTCTAGATACTGGAGCTGGTCTAGGGCAAATACCTCAGCCCAGTaGGCAGTCTTTCTAGATACT | + |
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Preference number: 4 (lower is better) Translates to: KYLSPVSSLSRYWSWSRANTSAQ*AVFLDT Trigger: AGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATT...TGCCCTAGACCAGCTCCAGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS-3UTR GCA 90 bp | AAATACCTCAGCCCAGTGAGCAGTCTTTCTAGATACTGGAGCTGGTCTAGGGCATTTACTCTTAAAATCTaGTCCCTGAAGTCAGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: KYLSPVSSLSRYWSWSRAFTLKI*SLKSAV Trigger: TACAGCTGACTTCAGGGAGCAGATTTTAAGAGTAAA...TGCCCTAGACCAGCTCCAGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS GCA 90 bp | CGCGGGCACCGCCCGGGCGGGAACTTGGGCGCCGTGGACGAAAGGTaGGGGGTGACCTTCGGACGAGGCCAACTGAGACCGGCTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: RGHRPGGNLGAVDER*GVTFGRGQLRPAAG Trigger: CCCGGCAGCCGGTCTCAGTTGGCCTCGTCCGAAGGTCACCCCGCACCTTTCGTCCACGGCGCCCAAGTTCCCGCCCGGGCGGTGCCCGCG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000436179.1 |
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| CDS CCA 90 bp | GCCGGGAGCGGTCGAAGGAGGAGTCTGACGGGTGGCGGGGGAGCCTaGGCGGCTGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: AGSGRRRSLTGGGGA*AAGGGGGGGGEGGG Trigger: TCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCAGCCGCCCAGGCTCCCCCGCCACCCGTCAGACTCCTCCTTCGACCGCTCCCGGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000005257.7 ENST00000468201.1 |
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| CDS GCA 90 bp | AGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGACTCCGACGCTTTaGTCTGGGGAGATCCACCCTCCTCCTGGCGGCTCTGCAGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: RRRRRRRRRRRTPTL*SGEIHPPPGGSAAA Trigger: GGCTGCTGCAGAGCCGCCAGGAGGAGGGTGGATCTCCCCAGAGCAAAGCGTCGGAGTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000005257.7 ENST00000468201.1 |
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| CDS-3UTR CAA 90 bp | AAATACCTCAGCCCAGTGAGCAGTCTTTCTAGATACTGGAGCTGGTCTAGGGCACAGGAAGGGCCACTCTaGTCAACATTAGCTCGTGTT | + |
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Preference number: 5 (lower is better) Translates to: KYLSPVSSLSRYWSWSRAQEGPL*STLARV Trigger: AACACGAGCTAATGTTGACAAGAGTGGCCCTTCCTG...TGCCCTAGACCAGCTCCAGTATCTAGAAAGACTGCTCACTGGGCTGAGGTATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS CCA 90 bp | GGTCTAGGGCAGTGGGATGAAATGTACTTGCAGGTGTTCCACATCTaGTCTTCAGGAAGGGCCACTCTTGTCAACATTAGCTCGTGTTTT | + |
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Preference number: 5 (lower is better) Translates to: GLGQWDEMYLQVFHI*SSGRATLVNISSCF Trigger: AAAACACGAGCTAATGTTGACAAGAGTGGCCCTTCCTGAAGACCAGATGTGGAACACCTGCAAGTACATTTCATCCCACTGCCCTAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS GCA 72 bp | CTCGGGGGCTCACTCGCCCCACAGCGGCGAACGCGGTaGCCCGGATTCCAGCCGGGCTCATCTCGCAGCTCG | + |
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Preference number: 6 (lower is better) Translates to: LGGSLAPQRRTR*PGFQPGSSRSS Trigger: CGAGCTGCGAGATGAGCCCGGCTGGAATCCGGGGCACCGCGTTCGCCGCTGTGGGGCGAGTGAGCCCCCGAG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436179.1 |
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| CDS CAA 72 bp | GTTGCCCCAGGTCGCGGGCACCGCCCGGGCGGGAACTaGGGCGCCGTGGACGAAAGGTGCGGGGTGACCTTC | + |
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Preference number: 6 (lower is better) Translates to: VAPGRGHRPGGN*GAVDERCGVTF Trigger: GAAGGTCACCCCGCACCTTTCGTCCACGGCGCCCAAGTTCCCGCCCGGGCGGTGCCCGCGACCTGGGGCAAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436179.1 |
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| CDS GCA 72 bp | CGGGGTGACCTTCGGACGAGGCCAACTGAGACCGGCTaGCGGGCGCAGGGGACCTCTCCGCAGCCGCTCACT | + |
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Preference number: 6 (lower is better) Translates to: RGDLRTRPTETG*RAQGTSPQPLT Trigger: AGTGAGCGGCTGCGGAGAGGTCCCCTGCGCCCGGCAGCCGGTCTCAGTTGGCCTCGTCCGAAGGTCACCCCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436179.1 |
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| CDS GCA 72 bp | CGCCCGGGCGGGAACTTGGGCGCCGTGGACGAAAGGTaGGGGGTGACCTTCGGACGAGGCCAACTGAGACCG | + |
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Preference number: 6 (lower is better) Translates to: RPGGNLGAVDER*GVTFGRGQLRP Trigger: CGGTCTCAGTTGGCCTCGTCCGAAGGTCACCCCGCACCTTTCGTCCACGGCGCCCAAGTTCCCGCCCGGGCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000436179.1 |
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| CDS CAA 90 bp | TTTCTAGATACTGGAGCTGGTCTAGGGCAGTGGGATGAAATGTACTaGCAGGTGTTCCACATCTGGTCTTCAGGAAGGGCCACTCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: FLDTGAGLGQWDEMY*QVFHIWSSGRATLV Trigger: GACAAGAGTGGCCCTTCCTGAAGACCAGATGTGGAACACCTGCAAGTACATTTCATCCCACTGCCCTAGACCAGCTCCAGTATCTAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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| CDS GCA 72 bp | GCTGTGCAAGCGCCCAAGGCCAGGTATTCAGTTCAGTaGGGAGAGTCTAATGACTTTAAGTCTGAAAAACCA | + |
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Preference number: 6 (lower is better) Translates to: AVQAPKARYSVQ*GESNDFKSEKP Trigger: TGGTTTTTCAGACTTAAAGTCATTAGACTCTCCGCACTGAACTGAATACCTGGCCTTGGGCGCTTGCACAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000436179.1 |
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| CDS CCA 72 bp | CAGTGGGATGAAATGTACTTGCAGGTGTTCCACATCTaGTCTTCAGGAAGGGCCACTCTTGTCAACATTAGC | + |
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Preference number: 6 (lower is better) Translates to: QWDEMYLQVFHI*SSGRATLVNIS Trigger: GCTAATGTTGACAAGAGTGGCCCTTCCTGAAGACCAGATGTGGAACACCTGCAAGTACATTTCATCCCACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434466.1 |
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