RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAD9A (Homo sapiens)

Ensembl gene IDs: ENSG00000172613

Ensembl transcript IDs: ENST00000307980.7, ENST00000529100.5, ENST00000530934.5, ENST00000535644.1, ENST00000538013.5, ENST00000541132.1, ENST00000542139.1, ENST00000543808.5, ENST00000544620.5, ENST00000621995.1, ENST00000622583.4

Found 291 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCTGGGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTaGGTCTCCAGCCGTGCTTGGCCTCAGGGCTGGCAGCCGGATCCT +
Preference number: 1 (lower is better)
Translates to: SWGRGCSSGQRQARS*VSSRAWPQGWQPDP
Trigger: AGGATCCGGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCCCCAGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR GCA 90 bp CTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTaGTTGGCCTCAGGGCTGGCAGCCGGATCCTGGGGCAACCCATCT +
Preference number: 1 (lower is better)
Translates to: LQLRATAGQVVGLQP*LASGLAAGSWGNPS
Trigger: AGATGGGTTGCCCCAGGATCCGGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 90 bp AGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTaGCCTCAGGGCTGGCAGCCGGATCCTGGGGCAACCCATCTGGTC +
Preference number: 1 (lower is better)
Translates to: SSGQRQARSWVSSRA*PQGWQPDPGATHLV
Trigger: GACCAGATGGGTTGCCCCAGGATCCGGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 90 bp GCCCAGGCCCGACCGCTGTGGGACAGCTTTACAGTGACAGCCAGCTaGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCAAGCCC +
Preference number: 1 (lower is better)
Translates to: AQARPLWDSFTVTAS*GLREAVKQLSSSKP
Trigger: GGGCTTGCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCCACAGCGGTCGGGCCTGGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR GCA 90 bp AATGAATCAATAGCAGCGTCCAGTCCCCCAGGGCTGCTTCCTGCCTaGACCTGCGGTGACTGTGAGCAGGATCCTGGGGCCGAGGCTGCA +
Preference number: 1 (lower is better)
Translates to: NESIAASSPPGLLPA*TCGDCEQDPGAEAA
Trigger: TGCAGCCTCGGCCCCAGGATCCTGCTCACAGTCACCGCAGGTGCAGGCAGGAAGCAGCCCTGGGGGACTGGACGCTGCTATTGATTCATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR TCA 90 bp GTGACGCTCTGGGGAGCCCAGGTCCTGGGAGTGCGAGTCGGTGTCTaGGAGTGTGGCCAAGACAAAGTGGCCGTCCAGCAAAGAGTCCTT +
Preference number: 1 (lower is better)
Translates to: VTLWGAQVLGVRVGV*ECGQDKVAVQQRVL
Trigger: AAGGACTCTTTGCTGGACGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTCCCAGGACCTGGGCTCCCCAGAGCGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR GCA 90 bp AATGCAGCTGGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATaGAGCATTTTTCCACCGTCTTCTCCAGCATCGCCAGTGAGCGGA +
Preference number: 1 (lower is better)
Translates to: NAAGPPGGCSGHSGR*SIFPPSSPASPVSG
Trigger: TCCGCTCACTGGCGATGCTGGAGAAGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CCA 90 bp GTAGTTCAGGGCCAAGTCTGGAAAGTCCTGATTGGCTGGGGGTTGTaGGGAGATAACGGCCCAGGCCCGACCGCTGTGGGACAGCTTTAC +
Preference number: 1 (lower is better)
Translates to: VVQGQVWKVLIGWGL*GDNGPGPTAVGQLY
Trigger: GTAAAGCTGTCCCACAGCGGTCGGGCCTGGGCCGTTATCTCCCCACAACCCCCAGCCAATCAGGACTTTCCAGACTTGGCCCTGAACTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR TCA 90 bp CCTCAGGGCTGGCAGCCGGATCCTGGGGCAACCCATCTGGTCTCTTaGATAAAGGTCAAAGCTGGATTCTCGCCATGGCCTCCGTCTCAC +
Preference number: 1 (lower is better)
Translates to: PQGWQPDPGATHLVS*IKVKAGFSPWPPSH
Trigger: GTGAGACGGAGGCCATGGCGAGAATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCCGGCTGCCAGCCCTGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR GCA 90 bp CAAAGCTGGATTCTCGCCATGGCCTCCGTCTCACATCTAAGACACTaGCTGGCAGCTCTTCTGCACAGAGCCGCTTGGGAGTCTCGGCAC +
Preference number: 1 (lower is better)
Translates to: QSWILAMASVSHLRH*LAALLHRAAWESRH
Trigger: GTGCCGAGACTCCCAAGCGGCTCTGTGCAGAAGAGCTGCCAGGCAGTGTCTTAGATGTGAGACGGAGGCCATGGCGAGAATCCAGCTTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 90 bp GTGGGTCTCCAGCCGTGCTTGGCCTCAGGGCTGGCAGCCGGATCCTaGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGGATT +
Preference number: 1 (lower is better)
Translates to: VGLQPCLASGLAAGS*GNPSGLLNKGQSWI
Trigger: AATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCCGGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 90 bp TCCTGGGAGTGCGAGTCGGTGTCTGAGAGTGTGGCCAAGACAAAGTaGCCGTCCAGCAAAGAGTCCTTGATGGTGAAGATGGCGGGCCTG +
Preference number: 1 (lower is better)
Translates to: SWECESVSESVAKTK*PSSKESLMVKMAGL
Trigger: CAGGCCCGCCATCTTCACCATCAAGGACTCTTTGCTGGACGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTCCCAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR GCA 90 bp TGGCAGTGCTGTCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGATGCAGCATTTTTCCACCGTCTTCT +
Preference number: 1 (lower is better)
Translates to: WQCCRTCNAAGPPGG*SGHSGRCSIFPPSS
Trigger: AGAAGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGACAGCACTGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR GCA 90 bp GGAAAGCAAGGAAAACTTGTCAGCTCCACGGGGGTCCCAGATGCATaGCCAGGACTTCAGGAAGGAACAGGTCATGATTGGCAGAGAAGC +
Preference number: 1 (lower is better)
Translates to: GKQGKLVSSTGVPDA*PGLQEGTGHDWQRS
Trigger: GCTTCTCTGCCAATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGTGGAGCTGACAAGTTTTCCTTGCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 90 bp GGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTaGATTCTCGCCATGGCCTCCGTCTCACATCTAAGACACTGCCTG +
Preference number: 1 (lower is better)
Translates to: GSWGNPSGLLNKGQS*ILAMASVSHLRHCL
Trigger: CAGGCAGTGTCTTAGATGTGAGACGGAGGCCATGGCGAGAATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR TCA 90 bp GGGCCTGCCTGGAGCATCAAAATGAATGCTAAGATTCAAGTTTGCTaGCTCTGCAAAGCTCAGGAGCCCCCGGAATTCCTTGAGGCAGAA +
Preference number: 1 (lower is better)
Translates to: GPAWSIKMNAKIQVC*LCKAQEPPEFLEAE
Trigger: TTCTGCCTCAAGGAATTCCGGGGGCTCCTGAGCTTTGCAGAGTCAGCAAACTTGAATCTTAGCATTCATTTTGATGCTCCAGGCAGGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR-3UTR TCA 90 bp GGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGGGGACAGCTTTACAGTaGCAGCCAGCTGGGGCCTGC +
Preference number: 2 (lower is better)
Translates to: GPRLQLRATAGQVVGLQPGTALQ*QPAGAC
Trigger: GCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCC...CGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR CCA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGAGGGGCGCGGAGCATGTaGGGGCACGAGGCTGGGTCG +
Preference number: 2 (lower is better)
Translates to: DDPAATANAQRHFSQCRRGARSM*GHEAGS
Trigger: CGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCC...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000542139.1
3UTR-3UTR GCA 90 bp GCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCACGGGGGTCCCAGATaGATGCCCAGGACTTCAGGA +
Preference number: 2 (lower is better)
Translates to: AEAAAQGNGRPGRGSPAVHGGPR*MPRTSG
Trigger: TCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGTG...CACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR GCA 90 bp GGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCCTGGCAGCTCTTCTaGACAGAGCCGCTTGGGAGT +
Preference number: 2 (lower is better)
Translates to: GRGCSSGQRQARSWVSSRAWQLF*TEPLGS
Trigger: ACTCCCAAGCGGCTCTGTGCAGAAGAGCTGCCAGGC...ACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR CCA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGACCCCAGAACCCGTGCTaGGGCGCGGAGCATGTGGGG +
Preference number: 2 (lower is better)
Translates to: DDPAATANAQRHFSQCRRPQNPC*GAEHVG
Trigger: CCCCACATGCTCCGCGCCCCAGCACGGGTTCTGGGG...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542139.1
3UTR-3UTR CCA 90 bp GCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGACCCAGTTCTGCCACTaGCTGGGGCTTCGTCTAGTC +
Preference number: 2 (lower is better)
Translates to: AEAAAQGNGRPGRGSPAVTQFCH*LGLRLV
Trigger: GACTAGACGAAGCCCCAGCCAGTGGCAGAACTGGGT...CACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR TCA 90 bp GGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTGGCCTCAGGGCTGGCAAGTCTGGAAAGTCCTaGTTGGCTGGGGGTTGTGGG +
Preference number: 2 (lower is better)
Translates to: GNGRPGRGSPAVLGLRAGKSGKS*LAGGCG
Trigger: CCCACAACCCCCAGCCAATCAGGACTTTCCAGACTT...GCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CAA 90 bp CTCACATCTAAGACACTGCCTGGCAGCTCTTCTGCACAGAGCCGCTaGGGAGTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCAC +
Preference number: 2 (lower is better)
Translates to: LTSKTLPGSSSAQSR*GVSAPGPSQGNPSH
Trigger: GTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAAGCGGCTCTGTGCAGAAGAGCTGCCAGGCAGTGTCTTAGATGTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR CCA 90 bp GGGCTGCTTCCTGCCTGCACCTGCGGTGACTGTGAGCAGGATCCTGGGGCCGAGCAGGCCCGACCGCTGTaGGACAGCTTTACAGTGACA +
Preference number: 2 (lower is better)
Translates to: GLLPACTCGDCEQDPGAEQARPL*DSFTVT
Trigger: TGTCACTGTAAAGCTGTCCCACAGCGGTCGGGCCTG...CTCGGCCCCAGGATCCTGCTCACAGTCACCGCAGGTGCAGGCAGGAAGCAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR GCA 90 bp GGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGATCATGTACGTCCGGGTGGGGTGTaGTGTGAGCCTGGAGCTGAG +
Preference number: 2 (lower is better)
Translates to: GQHPRALIAYSGFHGDHVRPGGV*CEPGAE
Trigger: CTCAGCTCCAGGCTCACAGCACACCCCACCCGGACG...TACATGATCGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR-3UTR TCA 90 bp ATGCAGCTGGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATGCAGCATTTCTCCAGCATCGCCAGTaGGCGGAAGACAGACAGGAA +
Preference number: 2 (lower is better)
Translates to: MQLDHQAAAPAIQGDAAFLQHRQ*AEDRQE
Trigger: TTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAG...AAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR-3UTR GCA 90 bp AGGTCCTGGGAGTGCGAGTCGGTGTCTGAGAGTGTGGCCAAGACAAAGTGGCCGCTGTCGAACTTGCAATaGAGCTGGACCACCAGGCGG +
Preference number: 2 (lower is better)
Translates to: RSWECESVSESVAKTKWPLSNLQ*SWTTRR
Trigger: CCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGACAG...CGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTCCCAGGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CAA 90 bp GCCTCAGGGCTGGCAGCCGGATCCTGGGGCAACCCATCTGGTCTCTaGAATAAAGGTCAAAGCTGGATTCTCGCCATGGCCTCCGTCTCA +
Preference number: 2 (lower is better)
Translates to: ASGLAAGSWGNPSGL*NKGQSWILAMASVS
Trigger: TGAGACGGAGGCCATGGCGAGAATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCCGGCTGCCAGCCCTGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR CCA 90 bp AGGTCCTGGGAGTGCGAGTCGGTGTCTGAGAGTGTGGCCAAGACAAAGTGGCCGCAGTCACCATGGCTTTaGCAGTGCTGTCGAACTTGC +
Preference number: 2 (lower is better)
Translates to: RSWECESVSESVAKTKWPQSPWL*QCCRTC
Trigger: GCAAGTTCGACAGCACTGCCAAAGCCATGGTGACTG...CGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTCCCAGGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR-3UTR TCA 90 bp GCATGCCCAGGACTTCAGGAAGGAACAGGTCATGATTGGCAGAGAAGCTGGATCGCCTGCGAGAGGCAGTaGAACAGCTCAGCTCCAGCA +
Preference number: 2 (lower is better)
Translates to: ACPGLQEGTGHDWQRSWIACERQ*NSSAPA
Trigger: TGCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGC...GATCCAGCTTCTCTGCCAATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR CCA 90 bp AACTTGTCAGCTCCACGGGGGTCCCAGATGCATGCCCAGGACTTCAGGAAGGAACTGGAAAGTCCTGATTaGCTGGGGGTTGTGGGGAGA +
Preference number: 2 (lower is better)
Translates to: NLSAPRGSQMHAQDFRKELESPD*LGVVGR
Trigger: TCTCCCCACAACCCCCAGCCAATCAGGACTTTCCAG...TTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGTGGAGCTGACAAGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR CCA 90 bp CCAGGTGAAAGGGAAATGGAGGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGAGTCAATGTCGTCATTaGCAAAGTCGTCCGGGTGGG +
Preference number: 2 (lower is better)
Translates to: PGEREMEGSTREPSLPIVSQCRH*QSRPGG
Trigger: CCCACCCGGACGACTTTGCCAATGACGACATTGACT...CACTATAGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTCCCTTTCACCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR-3UTR GCA 90 bp CCAGGTGAAAGGGAAATGGAGGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGGCCATTCAGGGAGATaGAGCATTTTTCCACCGTCT +
Preference number: 2 (lower is better)
Translates to: PGEREMEGSTREPSLPIVGHSGR*SIFPPS
Trigger: AGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCC...CACTATAGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTCCCTTTCACCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR-3UTR CCA 90 bp CCTAGCCACACACTCGGGTCCAAGGCTCTTAGAATTCCAAGTCAGCGCCAAAGAGATTGGCAGAGAAGCTaGATCACCAGGGGCCAGCAG +
Preference number: 2 (lower is better)
Translates to: PSHTLGSKALRIPSQRQRDWQRS*ITRGQQ
Trigger: CTGCTGGCCCCTGGTGATCCAGCTTCTCTGCCAATC...TCTTTGGCGCTGACTTGGAATTCTAAGAGCCTTGGACCCGAGTGTGTGGCTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR CCA 90 bp GAGTGCGAGTCGGTGTCTGAGAGTGTGGCCAAGACAAAGTGGCCGTCCAGCAAAGATGGCGGGCCTGCCTaGAGCATCAAAATGAATGCT +
Preference number: 2 (lower is better)
Translates to: ECESVSESVAKTKWPSSKDGGPA*SIKMNA
Trigger: AGCATTCATTTTGATGCTCCAGGCAGGCCCGCCATC...TTTGCTGGACGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CAA 90 bp GAATTCCAAGTCAGCGCCAAAGAGTATCAGGAAAGCAAGGAAAACTaGTCAGCTCCACGGGGGTCCCAGATGCATGCCCAGGACTTCAGG +
Preference number: 2 (lower is better)
Translates to: EFQVSAKEYQESKEN*SAPRGSQMHAQDFR
Trigger: CCTGAAGTCCTGGGCATGCATCTGGGACCCCCGTGGAGCTGACAAGTTTTCCTTGCTTTCCTGATACTCTTTGGCGCTGACTTGGAATTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR TCA 90 bp ACGGGGGTCCCAGATGCATGCCCAGGACTTCAGGAAGGAACAGGTCATGATTGGAGCTGGAGTATAGCCTaGGGCTCAATGAGAAATAAG +
Preference number: 2 (lower is better)
Translates to: TGVPDACPGLQEGTGHDWSWSIA*GSMRNK
Trigger: CTTATTTCTCATTGAGCCTCAGGCTATACTCCAGCT...CCAATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR TCA 90 bp GGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGATCATGTAAAGATTCAAGTTTGCTaGCTCTGCAAAGCTCAGGAG +
Preference number: 2 (lower is better)
Translates to: GQHPRALIAYSGFHGDHVKIQVC*LCKAQE
Trigger: CTCCTGAGCTTTGCAGAGTCAGCAAACTTGAATCTT...TACATGATCGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR GCA 72 bp AGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTaGTTGGCCTCAGGGCTGGCAGCCGGATCCTGGGGC +
Preference number: 3 (lower is better)
Translates to: RATAGQVVGLQP*LASGLAAGSWG
Trigger: GCCCCAGGATCCGGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 72 bp CGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTaGGTCTCCAGCCGTGCTTGGCCTCAGGGCTGGCAG +
Preference number: 3 (lower is better)
Translates to: RGCSSGQRQARS*VSSRAWPQGWQ
Trigger: CTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR-3UTR CAA 90 bp GGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTGGCCTCAGGGCTGGCGACAGGTTTCCAGCCTaGGCCAGCTGGAGTATAGCC +
Preference number: 3 (lower is better)
Translates to: GNGRPGRGSPAVLGLRAGDRFPA*ASWSIA
Trigger: GGCTATACTCCAGCTGGCCAAGGCTGGAAACCTGTC...GCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR GCA 72 bp ATAGCAGCGTCCAGTCCCCCAGGGCTGCTTCCTGCCTaGACCTGCGGTGACTGTGAGCAGGATCCTGGGGCC +
Preference number: 3 (lower is better)
Translates to: IAASSPPGLLPA*TCGDCEQDPGA
Trigger: GGCCCCAGGATCCTGCTCACAGTCACCGCAGGTGCAGGCAGGAAGCAGCCCTGGGGGACTGGACGCTGCTAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 72 bp GGTTGTGGGGAGATAACGGCCCAGGCCCGACCGCTGTaGGACAGCTTTACAGTGACAGCCAGCTGGGGCCTG +
Preference number: 3 (lower is better)
Translates to: GCGEITAQARPL*DSFTVTASWGL
Trigger: CAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCCACAGCGGTCGGGCCTGGGCCGTTATCTCCCCACAACC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 72 bp GGCCAAGTCTGGAAAGTCCTGATTGGCTGGGGGTTGTaGGGAGATAACGGCCCAGGCCCGACCGCTGTGGGA +
Preference number: 3 (lower is better)
Translates to: GQVWKVLIGWGL*GDNGPGPTAVG
Trigger: TCCCACAGCGGTCGGGCCTGGGCCGTTATCTCCCCACAACCCCCAGCCAATCAGGACTTTCCAGACTTGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR TCA 72 bp TGGGGAGCCCAGGTCCTGGGAGTGCGAGTCGGTGTCTaGGAGTGTGGCCAAGACAAAGTGGCCGTCCAGCAA +
Preference number: 3 (lower is better)
Translates to: WGAQVLGVRVGV*ECGQDKVAVQQ
Trigger: TTGCTGGACGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTCCCAGGACCTGGGCTCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CCA 72 bp CGACCGCTGTGGGACAGCTTTACAGTGACAGCCAGCTaGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCC +
Preference number: 3 (lower is better)
Translates to: RPLWDSFTVTAS*GLREAVKQLSS
Trigger: GGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCCACAGCGGTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR GCA 72 bp GGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATaGAGCATTTTTCCACCGTCTTCTCCAGCATCGCCA +
Preference number: 3 (lower is better)
Translates to: GPPGGCSGHSGR*SIFPPSSPASP
Trigger: TGGCGATGCTGGAGAAGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CCA 72 bp ATGGCTTTGGCAGTGCTGTCGAACTTGCAATGCAGCTaGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAG +
Preference number: 3 (lower is better)
Translates to: MALAVLSNLQCS*TTRRLLRPFRE
Trigger: CTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGACAGCACTGCCAAAGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CCA 72 bp CAGCCGTGCTTGGCCTCAGGGCTGGCAGCCGGATCCTaGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAA +
Preference number: 3 (lower is better)
Translates to: QPCLASGLAAGS*GNPSGLLNKGQ
Trigger: TTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCCGGCTGCCAGCCCTGAGGCCAAGCACGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 72 bp CCAGGTCCTGGGAGTGCGAGTCGGTGTCTGAGAGTGTaGCCAAGACAAAGTGGCCGTCCAGCAAAGAGTCCT +
Preference number: 3 (lower is better)
Translates to: PGPGSASRCLRV*PRQSGRPAKSP
Trigger: AGGACTCTTTGCTGGACGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTCCCAGGACCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR-3UTR CAA 90 bp GAAATGGAGGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGGAGTCAATGTCGTCATaGGCAAAGTCGTCCGGGTGG +
Preference number: 3 (lower is better)
Translates to: EMEGSTREPSLPIVVSMAESMSS*AKSSGW
Trigger: CCACCCGGACGACTTTGCCAATGACGACATTGACTC...CGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR GCA 72 bp ATTCTCGCCATGGCCTCCGTCTCACATCTAAGACACTaGCTGGCAGCTCTTCTGCACAGAGCCGCTTGGGAG +
Preference number: 3 (lower is better)
Translates to: ILAMASVSHLRH*LAALLHRAAWE
Trigger: CTCCCAAGCGGCTCTGTGCAGAAGAGCTGCCAGGCAGTGTCTTAGATGTGAGACGGAGGCCATGGCGAGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR GCA 72 bp TGTCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGATGCAGCATTTTTCCA +
Preference number: 3 (lower is better)
Translates to: CRTCNAAGPPGG*SGHSGRCSIFP
Trigger: TGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR TCA 72 bp TGGCAGCCGGATCCTGGGGCAACCCATCTGGTCTCTTaGATAAAGGTCAAAGCTGGATTCTCGCCATGGCCT +
Preference number: 3 (lower is better)
Translates to: WQPDPGATHLVS*IKVKAGFSPWP
Trigger: AGGCCATGGCGAGAATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCCGGCTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR GCA 72 bp GGAAAACTTGTCAGCTCCACGGGGGTCCCAGATGCATaGCCAGGACTTCAGGAAGGAACAGGTCATGATTGG +
Preference number: 3 (lower is better)
Translates to: GKLVSSTGVPDA*PGLQEGTGHDW
Trigger: CCAATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGTGGAGCTGACAAGTTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR CCA 72 bp TGCGAGTCGGTGTCTGAGAGTGTGGCCAAGACAAAGTaGCCGTCCAGCAAAGAGTCCTTGATGGTGAAGATG +
Preference number: 3 (lower is better)
Translates to: CESVSESVAKTK*PSSKESLMVKM
Trigger: CATCTTCACCATCAAGGACTCTTTGCTGGACGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CCA 72 bp TTTCCATGGCGATCATGTAAGAGTCAATGTCGTCATTaGCAAAGTCGTCCGGGTGGGGTGTGCTGTGAGCCT +
Preference number: 3 (lower is better)
Translates to: FPWRSCKSQCRH*QSRPGGVCCEP
Trigger: AGGCTCACAGCACACCCCACCCGGACGACTTTGCCAATGACGACATTGACTCTTACATGATCGCCATGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CCA 72 bp GGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTaGATTCTCGCCATGGCCTCCGTCTCACATCTAAGA +
Preference number: 3 (lower is better)
Translates to: GNPSGLLNKGQS*ILAMASVSHLR
Trigger: TCTTAGATGTGAGACGGAGGCCATGGCGAGAATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
3UTR TCA 72 bp ATGGTGAAGATGGCGGGCCTGCCTGGAGCATCAAAATaGATGCTAAGATTCAAGTTTGCTGACTCTGCAAAG +
Preference number: 3 (lower is better)
Translates to: MVKMAGLPGASK*MLRFKFADSAK
Trigger: CTTTGCAGAGTCAGCAAACTTGAATCTTAGCATTCATTTTGATGCTCCAGGCAGGCCCGCCATCTTCACCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp TGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGAGGGGCGCGGAGCATGTaGGGGCACGAGGCTGGGTCG +
Preference number: 4 (lower is better)
Translates to: WGAEHVGARGWVEDGLQGGARSM*GHEAGS
Trigger: CGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCC...TCCCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp GCTGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGCCCCAGAACCCGTGCTaGGGCGCGGAGCATGTGGGG +
Preference number: 4 (lower is better)
Translates to: AGARSMWGHEAGSKTACRPQNPC*GAEHVG
Trigger: CCCCACATGCTCCGCGCCCCAGCACGGGTTCTGGGG...CCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR TCA 90 bp GGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTGGCCTCAGGGCTGGCGGTAGCTGCGCAGGATaGCCCTGCGGCCACGGCCAA +
Preference number: 4 (lower is better)
Translates to: GNGRPGRGSPAVLGLRAGGSCAG*PCGHGQ
Trigger: TTGGCCGTGGCCGCAGGGTCATCCTGCGCAGCTACC...GCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp TGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGAGCCAGCGGCCAACACTaGCCAGCTCTCCGCGACCTC +
Preference number: 4 (lower is better)
Translates to: WGAEHVGARGWVEDGLQGASGQH*PALRDL
Trigger: GAGGTCGCGGAGAGCTGGGCAGTGTTGGCCGCTGGC...TCCCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp GCTGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGAGAGCTCGTCCCCGATaGGGGACAGGGAGTGGACGG +
Preference number: 4 (lower is better)
Translates to: AGARSMWGHEAGSKTACRRARPR*GTGSGR
Trigger: CCGTCCACTCCCTGTCCCGCATCGGGGACGAGCTCT...CCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp GCTGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: AGARSMWGHEAGSKTACRGPPGG*SGHSGR
Trigger: TCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCC...CCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp GGGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCTCTTCCTCCTCGGAGTaGGGACCGGGGCTCTTGGGG +
Preference number: 4 (lower is better)
Translates to: GAEAAAQGNGRPGRGSPASSSSE*GPGLLG
Trigger: CCCCAAGAGCCCCGGTCCCCACTCCGAGGAGGAAGA...GGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTGCACAGAGCCGCTTaGGAGTCTCGGCACCGGGCC +
Preference number: 4 (lower is better)
Translates to: AEAAAQGNGRPGRGSPAVLHRAA*ESRHRA
Trigger: GGCCCGGTGCCGAGACTCCCAAGCGGCTCTGTGCAG...CACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GCTGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGTCACGTTGCCGCCCGTaGCCAGGCACTTCATGCTGC +
Preference number: 4 (lower is better)
Translates to: AGARSMWGHEAGSKTACRSRCRP*PGTSCC
Trigger: GCAGCATGAAGTGCCTGGTCACGGGCGGCAACGTGA...CCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp CTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTGGCCTCAGGGCTCCCCCAGAACCCGTaGTGGGGCGCGGAGCATGTG +
Preference number: 4 (lower is better)
Translates to: LRATAGQVVGLQPCLASGLPQNP*WGAEHV
Trigger: CACATGCTCCGCGCCCCAGCACGGGTTCTGGGGGAG...CCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGTGGGTCTCCAGCCGTaGTTGGCCTCAGGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: GRGCSSGQRQARSWVSSRVGLQP*LASGLA
Trigger: TGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCAC...ACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGATGCGGGACAGGGAGTaGACGGCCTTGCCGAGCACC +
Preference number: 4 (lower is better)
Translates to: AEAAAQGNGRPGRGSPAVMRDRE*TALPST
Trigger: GGTGCTCGGCAAGGCCGTCCACTCCCTGTCCCGCAT...CACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp TGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGAATGCGGGACAGGGAGTaGACGGCCTTGCCGAGCACC +
Preference number: 4 (lower is better)
Translates to: WGAEHVGARGWVEDGLQGMRDRE*TALPST
Trigger: GGTGCTCGGCAAGGCCGTCCACTCCCTGTCCCGCAT...TCCCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp TTGGGAGTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCACACACTCGGGGTGGGGGCACGAGGCTaGGTCGAAGACGGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: LGVSAPGPSQGNPSHTLGVGARG*VEDGLQ
Trigger: CTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCAC...CCCGAGTGTGTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp CCAGGCCCGACCGCTGTGGGACAGCTTTACAGTGACAGCCAGCTGGGGCCTGCGGCCAGCGGCCAACACTaGCCAGCTCTCCGCGACCTC +
Preference number: 4 (lower is better)
Translates to: PGPTAVGQLYSDSQLGPAASGQH*PALRDL
Trigger: GAGGTCGCGGAGAGCTGGGCAGTGTTGGCCGCTGGC...CGCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCCACAGCGGTCGGGCCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GGGCTGCTTCCTGCCTGCACCTGCGGTGACTGTGAGCAGGATCCTGGGGCCGAGCCAGGCACTTCATGCTaGCCCAGCGCTCCGCCAGCG +
Preference number: 4 (lower is better)
Translates to: GLLPACTCGDCEQDPGAEPGTSC*PSAPPA
Trigger: CGCTGGCGGAGCGCTGGGGCAGCATGAAGTGCCTGG...CTCGGCCCCAGGATCCTGCTCACAGTCACCGCAGGTGCAGGCAGGAAGCAGCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp TGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGAGGGAGTGGACGGCCTTaGCGAGCACCTTCACGTTGC +
Preference number: 4 (lower is better)
Translates to: WGAEHVGARGWVEDGLQGGSGRP*RAPSRC
Trigger: GCAACGTGAAGGTGCTCGGCAAGGCCGTCCACTCCC...TCCCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp TTGGGAGTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCACACACTCGGGGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: LGVSAPGPSQGNPSHTLGGPPGG*SGHSGR
Trigger: TCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCC...CCCGAGTGTGTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GCTGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGGTCCTGACCAGGGGTaGCTGCCTGGTATTGCTGGA +
Preference number: 4 (lower is better)
Translates to: AGARSMWGHEAGSKTACRGPDQG*LPGIAG
Trigger: TCCAGCAATACCAGGCAGCCACCCCTGGTCAGGACC...CCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR TCA 90 bp GGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTGGCCTCAGGGCTGGCGCAAGCCCACCTTTCTaGTCCCCAGGGCTGAGAGAC +
Preference number: 4 (lower is better)
Translates to: GNGRPGRGSPAVLGLRAGASPPF*SPGLRD
Trigger: GTCTCTCAGCCCTGGGGATCAGAAAGGTGGGCTTGC...GCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp TTGGGAGTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCACACACTCGGGGGGACAGCTTTACAGTaGCAGCCAGCTGGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: LGVSAPGPSQGNPSHTLGGTALQ*QPAGAC
Trigger: GCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCC...CCCGAGTGTGTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAA
68% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp CTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTGGCCTCAGGGGGGAGTGGACGGCCTTaGCGAGCACCTTCACGTTGC +
Preference number: 4 (lower is better)
Translates to: LRATAGQVVGLQPCLASGGSGRP*RAPSRC
Trigger: GCAACGTGAAGGTGCTCGGCAAGGCCGTCCACTCCC...CCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAG
68% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GCTGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGAACTTGCAATGCAGCTaGACCACCAGGCGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: AGARSMWGHEAGSKTACRNLQCS*TTRRLL
Trigger: GAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTT...CCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp ACCGCTGTGGGACAGCTTTACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGGGGCGCGGAGCATGTaGGGGCACGAGGCTGGGTCG +
Preference number: 4 (lower is better)
Translates to: TAVGQLYSDSQLGPARGSGARSM*GHEAGS
Trigger: CGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCC...ACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCCACAGCGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GGGCTGCTTCCTGCCTGCACCTGCGGTGACTGTGAGCAGGATCCTGGGGCCGAGTCACGTTGCCGCCCGTaGCCAGGCACTTCATGCTGC +
Preference number: 4 (lower is better)
Translates to: GLLPACTCGDCEQDPGAESRCRP*PGTSCC
Trigger: GCAGCATGAAGTGCCTGGTCACGGGCGGCAACGTGA...CTCGGCCCCAGGATCCTGCTCACAGTCACCGCAGGTGCAGGCAGGAAGCAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCAAGCAGCGCAGCAGGTCCTaGCCAGGGGTGGCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: VTASWGLREAVKQLSSSKQRSRS*PGVAAW
Trigger: CCAGGCAGCCACCCCTGGTCAGGACCTGCTGCGCTG...CTTGCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTCTCCAGCATCGCCAGTaGGCGGAAGACAGACAGGAA +
Preference number: 4 (lower is better)
Translates to: GRGCSSGQRQARSWVSSRLQHRQ*AEDRQE
Trigger: TTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAG...ACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGGTGCGAGTCGGTGTCTaGGAGTGTGGCCAAGACAAA +
Preference number: 4 (lower is better)
Translates to: GPRLQLRATAGQVVGLQPVRVGV*ECGQDK
Trigger: TTTGTCTTGGCCACACTCTCAGACACCGACTCGCAC...CGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTGGCCTCAGGGCTGGCGGAGCCGAAGAACAGTaGGCGGAACTTCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: GNGRPGRGSPAVLGLRAGGAEEQ*AELLGW
Trigger: CCACCCAAGAAGTTCCGCTCACTGTTCTTCGGCTCC...GCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp TTGGGAGTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCACACACTCGGGGCCTGCGAGAGGCAGTaGAACAGCTCAGCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: LGVSAPGPSQGNPSHTLGACERQ*NSSAPA
Trigger: TGCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGC...CCCGAGTGTGTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GCTGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGCTGACCAGGGGTGGCTaGCTGGTATTGCTGGAAGAA +
Preference number: 4 (lower is better)
Translates to: AGARSMWGHEAGSKTACRLTRGG*LVLLEE
Trigger: TTCTTCCAGCAATACCAGGCAGCCACCCCTGGTCAG...CCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp GCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGTCCGCACCCCGAACTTaGAATGCAGCTGGACCACCA +
Preference number: 4 (lower is better)
Translates to: AEAAAQGNGRPGRGSPAVSAPRT*NAAGPP
Trigger: TGGTGGTCCAGCTGCATTGCAAGTTCGGGGTGCGGA...CACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGACTCCCCCAGAACCCGTaGTGGGGCGCGGAGCATGTG +
Preference number: 4 (lower is better)
Translates to: DDPAATANAQRHFSQCRRLPQNP*WGAEHV
Trigger: CACATGCTCCGCGCCCCAGCACGGGTTCTGGGGGAG...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp GCTGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGCGTCACTTCAGCCAGTaGAGGAGAGAAGGGCAGAAC +
Preference number: 4 (lower is better)
Translates to: AGARSMWGHEAGSKTACRRHFSQ*RREGQN
Trigger: GTTCTGCCCTTCTCTCCTGCACTGGCTGAAGTGACG...CCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp GTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCACACACTCGGGTCCAAGGCCTGGCAGCTCTTCTaGACAGAGCCGCTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: VSAPGPSQGNPSHTLGSKAWQLF*TEPLGS
Trigger: ACTCCCAAGCGGCTCTGTGCAGAAGAGCTGCCAGGC...CTTGGACCCGAGTGTGTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp CCAGGCCCGACCGCTGTGGGACAGCTTTACAGTGACAGCCAGCTGGGGCCTGCGGGGCTGCTTCCTGCCTaGACCTGCGGTGACTGTGAG +
Preference number: 4 (lower is better)
Translates to: PGPTAVGQLYSDSQLGPAGLLPA*TCGDCE
Trigger: CTCACAGTCACCGCAGGTGCAGGCAGGAAGCAGCCC...CGCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCCACAGCGGTCGGGCCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp TGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGAAGTCCGAACTTGCAATaGAGCTGGACCACCAGGCGG +
Preference number: 4 (lower is better)
Translates to: WGAEHVGARGWVEDGLQGSPNLQ*SWTTRR
Trigger: CCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGGACT...TCCCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp TGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGACCAGGGGTGGCTGCCTaGTATTGCTGGAAGAAGAGC +
Preference number: 4 (lower is better)
Translates to: WGAEHVGARGWVEDGLQGPGVAA*YCWKKS
Trigger: GCTCTTCTTCCAGCAATACCAGGCAGCCACCCCTGG...TCCCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGAGTGGGGGCACGAGGCTaGGTCGAAGACGGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: DDPAATANAQRHFSQCRRVGARG*VEDGLQ
Trigger: CTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCAC...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp ACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCCCCCAGAACCCGTGCTaGGGCGCGGAGCATGTGGGG +
Preference number: 4 (lower is better)
Translates to: TVTASWGLREAVKQLSSSPQNPC*GAEHVG
Trigger: CCCCACATGCTCCGCGCCCCAGCACGGGTTCTGGGG...GCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GGGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCTCCCAGGCACTGTACTaGGCTCAGCCTCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: GAEAAAQGNGRPGRGSPASQALY*AQPHLP
Trigger: AGGAAGATGAGGCTGAGCCCAGTACAGTGCCTGGGA...GGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGGCTGCCTGGTATTGCTaGAAGAAGAGCGGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: AEAAAQGNGRPGRGSPAVAAWYC*KKSGAK
Trigger: CTTTGCCCCGCTCTTCTTCCAGCAATACCAGGCAGC...CACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GGGCTGCTTCCTGCCTGCACCTGCGGTGACTGTGAGCAGGATCCTGGGGCCGAGGGTCCTGACCAGGGGTaGCTGCCTGGTATTGCTGGA +
Preference number: 4 (lower is better)
Translates to: GLLPACTCGDCEQDPGAEGPDQG*LPGIAG
Trigger: TCCAGCAATACCAGGCAGCCACCCCTGGTCAGGACC...CTCGGCCCCAGGATCCTGCTCACAGTCACCGCAGGTGCAGGCAGGAAGCAGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp CTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTGGCCTCAGGGGATTGGCAGAGAAGCTaGATCACCAGGGGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: LRATAGQVVGLQPCLASGDWQRS*ITRGQQ
Trigger: CTGCTGGCCCCTGGTGATCCAGCTTCTCTGCCAATC...CCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp CTGGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATGCAGCATTTTTCCACGCCAGCGGCCAACACTaGCCAGCTCTCCGCGACCTC +
Preference number: 4 (lower is better)
Translates to: LDHQAAAPAIQGDAAFFHASGQH*PALRDL
Trigger: GAGGTCGCGGAGAGCTGGGCAGTGTTGGCCGCTGGC...GTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR GCA 90 bp GCTGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGGCCATTCAGGGAGATaGAGCATTTTTCCACCGTCT +
Preference number: 4 (lower is better)
Translates to: AGARSMWGHEAGSKTACRGHSGR*SIFPPS
Trigger: AGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCC...CCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp TTGGGAGTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCACACACTCGGGTTTGGCAGTGCTGTCTaGCTCCTCCTCGTGGTAGCT +
Preference number: 4 (lower is better)
Translates to: LGVSAPGPSQGNPSHTLGFGSAV*LLLVVA
Trigger: AGCTACCACGAGGAGGAGGCAGACAGCACTGCCAAA...CCCGAGTGTGTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGCTTGGCCTCAGGGCTGGCAGTCAATGTCGTCATTaGCAAAGTCGTCCGGGTGGG +
Preference number: 4 (lower is better)
Translates to: GNGRPGRGSPAVLGLRAGSQCRH*QSRPGG
Trigger: CCCACCCGGACGACTTTGCCAATGACGACATTGACT...GCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp TGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCAAGCCCACCTTTCTGGTCTCCAGCCGTGCTTaGCCTCAGGGCTGGCAGCCG +
Preference number: 4 (lower is better)
Translates to: WGLREAVKQLSSSKPTFLVSSRA*PQGWQP
Trigger: CGGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGAC...CAGAAAGGTGGGCTTGCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp TGCTGTCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTGCTCCGGCCATTCAGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: CCRTCNAAGPPGGCSGHSGPPGG*SGHSGR
Trigger: TCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCC...TGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGACAGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR GCA 90 bp ATTGGCTGGGGGTTGTGGGGAGATAACGGCCCAGGCCCGACCGCTGTGGGACAGTCCTGGGCCTGCAGCTaGTGGAAATCCTCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: IGWGLWGDNGPGPTAVGQSWACS*WKSSSP
Trigger: TGGAGAGGAGGATTTCCAGCAGCTGCAGGCCCAGGA...CTGTCCCACAGCGGTCGGGCCTGGGCCGTTATCTCCCCACAACCCCCAGCCAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGAGGGTCGAAGACGGCCTaGAGGGACTCACAGTCCGAA +
Preference number: 4 (lower is better)
Translates to: DDPAATANAQRHFSQCRRGSKTA*RDSQSE
Trigger: TTCGGACTGTGAGTCCCTGCAGGCCGTCTTCGACCC...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp GTCCTGATTGGCTGGGGGTTGTGGGGAGATAACGGCCCAGGCCCGACCGCTGTGCCAGGGGTGGCTGCCTaGTATTGCTGGAAGAAGAGC +
Preference number: 4 (lower is better)
Translates to: VLIGWGLWGDNGPGPTAVPGVAA*YCWKKS
Trigger: GCTCTTCTTCCAGCAATACCAGGCAGCCACCCCTGG...CACAGCGGTCGGGCCTGGGCCGTTATCTCCCCACAACCCCCAGCCAATCAGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGACATCTCAGTCACCATaGCTTTGGCAGTGCTGTCTG +
Preference number: 4 (lower is better)
Translates to: AEAAAQGNGRPGRGSPAVTSQSP*LWQCCL
Trigger: CAGACAGCACTGCCAAAGCCATGGTGACTGAGATGT...CACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp TGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCAAGCCCACCTTTCTGGGGGAGCCCAGGTCCTaGGAGTGCGAGTCGGTGTCT +
Preference number: 4 (lower is better)
Translates to: WGLREAVKQLSSSKPTFLGEPRS*ECESVS
Trigger: AGACACCGACTCGCACTCCCAGGACCTGGGCTCCCC...CAGAAAGGTGGGCTTGCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GAGCCCAGGTCCTGGGAGTGCGAGTCGGTGTCTGAGAGTGTGGCCAAGACAAAGGGGGAGCCCAGGTCCTaGGAGTGCGAGTCGGTGTCT +
Preference number: 4 (lower is better)
Translates to: EPRSWECESVSESVAKTKGEPRS*ECESVS
Trigger: AGACACCGACTCGCACTCCCAGGACCTGGGCTCCCC...CTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTCCCAGGACCTGGGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp GGGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCAATAAAGGTCAAAGCTaGATTCTCGCCATGGCCTCC +
Preference number: 4 (lower is better)
Translates to: GAEAAAQGNGRPGRGSPANKGQS*ILAMAS
Trigger: GGAGGCCATGGCGAGAATCCAGCTTTGACCTTTATT...GGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp ACCGCTGTGGGACAGCTTTACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTCTGGCAGCCGGATCCTaGGGCAACCCATCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: TAVGQLYSDSQLGPARGSLAAGS*GNPSGL
Trigger: GAGACCAGATGGGTTGCCCCAGGATCCGGCTGCCAG...ACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCCACAGCGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp CTTTACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCGGCAGGCCAGGTCGTaGGTCTCCAGCCGTGCTTGG +
Preference number: 4 (lower is better)
Translates to: LYSDSQLGPARGSETAQLRQARS*VSSRAW
Trigger: CCAAGCACGGCTGGAGACCCACGACCTGGCCTGCCG...GAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGTAAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGACTCCAGCATCGCCAGTaGGCGGAAGACAGACAGGAA +
Preference number: 4 (lower is better)
Translates to: DDPAATANAQRHFSQCRRLQHRQ*AEDRQE
Trigger: TTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAG...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGAGTGGCTGCCTGGTATTaGTGGAAGAAGAGCGGGGCA +
Preference number: 4 (lower is better)
Translates to: DDPAATANAQRHFSQCRRVAAWY*WKKSGA
Trigger: TGCCCCGCTCTTCTTCCAGCAATACCAGGCAGCCAC...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR GCA 90 bp ACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCACCCCGAACTTGCAATaGAGCTGGACCACCAGGCGG +
Preference number: 4 (lower is better)
Translates to: TVTASWGLREAVKQLSSSTPNLQ*SWTTRR
Trigger: CCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGGGGT...GCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp CAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCAAGCCCACCTTGTGAGCGGAACTTCTTaGGTGGGGGAGTCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: QLGPARGSETAQLQQAHLVSGTS*VGESQA
Trigger: TGCCTGGGACTCCCCCACCCAAGAAGTTCCGCTCAC...AAGGTGGGCTTGCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGAAGATTCAAGTTTGCTaGCTCTGCAAAGCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: AEAAAQGNGRPGRGSPAVKIQVC*LCKAQE
Trigger: CTCCTGAGCTTTGCAGAGTCAGCAAACTTGAATCTT...CACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GAAAGCAAGGAAAACTTGTCAGCTCCACGGGGGTCCCAGATGCATGCCCAGGACAGAGCTCGTCCCCGATaGGGGACAGGGAGTGGACGG +
Preference number: 4 (lower is better)
Translates to: ESKENLSAPRGSQMHAQDRARPR*GTGSGR
Trigger: CCGTCCACTCCCTGTCCCGCATCGGGGACGAGCTCT...GTCCTGGGCATGCATCTGGGACCCCCGTGGAGCTGACAAGTTTTCCTTGCTTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp ACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCGTGGCTGCCTGGTATTaGTGGAAGAAGAGCGGGGCA +
Preference number: 4 (lower is better)
Translates to: TVTASWGLREAVKQLSSSVAAWY*WKKSGA
Trigger: TGCCCCGCTCTTCTTCCAGCAATACCAGGCAGCCAC...GCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GAGTGCGAGTCGGTGTCTGAGAGTGTGGCCAAGACAAAGTGGCCGTCCAGCAAACGTCCGGGTGGGGTGTaGTGTGAGCCTGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: ECESVSESVAKTKWPSSKRPGGV*CEPGAE
Trigger: CTCAGCTCCAGGCTCACAGCACACCCCACCCGGACG...TTTGCTGGACGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGAGCTGCCTGGTATTGCTaGAAGAAGAGCGGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: DDPAATANAQRHFSQCRRAAWYC*KKSGAK
Trigger: CTTTGCCCCGCTCTTCTTCCAGCAATACCAGGCAGC...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp ACTTGCAATGCAGCTGGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATGCCCAGGGGTGGCTGCCTaGTATTGCTGGAAGAAGAGC +
Preference number: 4 (lower is better)
Translates to: TCNAAGPPGGCSGHSGRCPGVAA*YCWKKS
Trigger: GCTCTTCTTCCAGCAATACCAGGCAGCCACCCCTGG...GCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp CAGTTCTGCCACTGGCTGGGGCTTCGTCTAGTCCAAGGCCTCTGGGTACAGGCTCAGGTGAAAGGGAAATaGAGGGCAGCACCCGCGAGC +
Preference number: 4 (lower is better)
Translates to: QFCHWLGLRLVQGLWVQAQVKGK*RAAPAS
Trigger: GCTCGCGGGTGCTGCCCTCCATTTCCCTTTCACCTG...AGCCTGTACCCAGAGGCCTTGGACTAGACGAAGCCCCAGCCAGTGGCAGAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp ACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCACCCAGTTCTGCCACTaGCTGGGGCTTCGTCTAGTC +
Preference number: 4 (lower is better)
Translates to: TVTASWGLREAVKQLSSSTQFCH*LGLRLV
Trigger: GACTAGACGAAGCCCCAGCCAGTGGCAGAACTGGGT...GCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GAAAGGGAAATGGAGGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCTCACGTTGCCGCCCGTaGCCAGGCACTTCATGCTGC +
Preference number: 4 (lower is better)
Translates to: EREMEGSTREPSLPIVVSSRCRP*PGTSCC
Trigger: GCAGCATGAAGTGCCTGGTCACGGGCGGCAACGTGA...GGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTCCCTTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR TCA 90 bp TTGGGAGTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCACACACTCGGGACCCATCTGGTCTCTTaGATAAAGGTCAAAGCTGGA +
Preference number: 4 (lower is better)
Translates to: LGVSAPGPSQGNPSHTLGTHLVS*IKVKAG
Trigger: TCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGT...CCCGAGTGTGTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp ACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCCTGACCAGGGGTGGCTaGCTGGTATTGCTGGAAGAA +
Preference number: 4 (lower is better)
Translates to: TVTASWGLREAVKQLSSSLTRGG*LVLLEE
Trigger: TTCTTCCAGCAATACCAGGCAGCCACCCCTGGTCAG...GCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGACTCACAGTCCGAACTTaGAATGCAGCTGGACCACCA +
Preference number: 4 (lower is better)
Translates to: DDPAATANAQRHFSQCRRLTVRT*NAAGPP
Trigger: TGGTGGTCCAGCTGCATTGCAAGTTCGGACTGTGAG...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CCA 90 bp TGGGGGCCAGGTGAAAGGGAAATGGAGGGCAGCACCCGCGAGCCCTCATTGCCTAGTCAATGTCGTCATTaGCAAAGTCGTCCGGGTGGG +
Preference number: 4 (lower is better)
Translates to: WGPGEREMEGSTREPSLPSQCRH*QSRPGG
Trigger: CCCACCCGGACGACTTTGCCAATGACGACATTGACT...AGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTCCCTTTCACCTGGCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp GAAATGGAGGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGCAGTCCCTACCTTCTTaGGTGGGGGAGTCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: EMEGSTREPSLPIVVSMAQSLPS*VGESQA
Trigger: TGCCTGGGACTCCCCCACCCAAGAAGGTAGGGACTG...CGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR TCA 90 bp GAAATGGAGGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGCTCCAGCATCGCCAGTaGGCGGAAGACAGACAGGAA +
Preference number: 4 (lower is better)
Translates to: EMEGSTREPSLPIVVSMALQHRQ*AEDRQE
Trigger: TTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAG...CGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR TCA 90 bp CAGTTCTGCCACTGGCTGGGGCTTCGTCTAGTCCAAGGCCTCTGGGTACAGGCTAAGTCTGGAAAGTCCTaGTTGGCTGGGGGTTGTGGG +
Preference number: 4 (lower is better)
Translates to: QFCHWLGLRLVQGLWVQAKSGKS*LAGGCG
Trigger: CCCACAACCCCCAGCCAATCAGGACTTTCCAGACTT...AGCCTGTACCCAGAGGCCTTGGACTAGACGAAGCCCCAGCCAGTGGCAGAACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp AAGTTTGCTGACTCTGCAAAGCTCAGGAGCCCCCGGAATTCCTTGAGGCAGAAACCAGGCACTTCATGCTaGCCCAGCGCTCCGCCAGCG +
Preference number: 4 (lower is better)
Translates to: KFADSAKLRSPRNSLRQKPGTSC*PSAPPA
Trigger: CGCTGGCGGAGCGCTGGGGCAGCATGAAGTGCCTGG...TTTCTGCCTCAAGGAATTCCGGGGGCTCCTGAGCTTTGCAGAGTCAGCAAACTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR GCA 90 bp CAGTTCTGCCACTGGCTGGGGCTTCGTCTAGTCCAAGGCCTCTGGGTACAGGCTCGTCACTTCAGCCAGTaGAGGAGAGAAGGGCAGAAC +
Preference number: 4 (lower is better)
Translates to: QFCHWLGLRLVQGLWVQARHFSQ*RREGQN
Trigger: GTTCTGCCCTTCTCTCCTGCACTGGCTGAAGTGACG...AGCCTGTACCCAGAGGCCTTGGACTAGACGAAGCCCCAGCCAGTGGCAGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp CCACGGGGGTCCCAGATGCATGCCCAGGACTTCAGGAAGGAACAGGTCATGATTCCCAGGTCCTGGGAGTaGGAGTCGGTGTCTGAGAGT +
Preference number: 4 (lower is better)
Translates to: PRGSQMHAQDFRKEQVMIPRSWE*ESVSES
Trigger: ACTCTCAGACACCGACTCGCACTCCCAGGACCTGGG...AATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GAGTGCGAGTCGGTGTCTGAGAGTGTGGCCAAGACAAAGTGGCCGTCCAGCAAACCCAGGTCCTGGGAGTaGGAGTCGGTGTCTGAGAGT +
Preference number: 4 (lower is better)
Translates to: ECESVSESVAKTKWPSSKPRSWE*ESVSES
Trigger: ACTCTCAGACACCGACTCGCACTCCCAGGACCTGGG...TTTGCTGGACGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp GCAGCTGGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATGCAGCATTTTTGCTGCCTGGTATTGCTaGAAGAAGAGCGGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: AAGPPGGCSGHSGRCSIFAAWYC*KKSGAK
Trigger: CTTTGCCCCGCTCTTCTTCCAGCAATACCAGGCAGC...AAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp GAAAGGGAAATGGAGGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCCAGGTGAAAGGGAAATaGAGGGCAGCACCCGCGAGC +
Preference number: 4 (lower is better)
Translates to: EREMEGSTREPSLPIVVSQVKGK*RAAPAS
Trigger: GCTCGCGGGTGCTGCCCTCCATTTCCCTTTCACCTG...GGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTCCCTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp GGCTTTGGCAGTGCTGTCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTGCTTCCCAGGCACTGTACTaGGCTCAGCCTCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: GFGSAVELAMQLDHQAAASQALY*AQPHLP
Trigger: AGGAAGATGAGGCTGAGCCCAGTACAGTGCCTGGGA...AGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGACAGCACTGCCAAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp ACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCGTTCAGGGCCAAGTCTaGAAAGTCCTGATTGGCTGG +
Preference number: 4 (lower is better)
Translates to: TVTASWGLREAVKQLSSSVQGQV*KVLIGW
Trigger: CCAGCCAATCAGGACTTTCCAGACTTGGCCCTGAAC...GCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp ACGGGGGTCCCAGATGCATGCCCAGGACTTCAGGAAGGAACAGGTCATGATTGGTGGAAGGACAGGTTGTaGGTCTTCCGCACCCCGAAC +
Preference number: 4 (lower is better)
Translates to: TGVPDACPGLQEGTGHDWWKDRL*VFRTPN
Trigger: GTTCGGGGTGCGGAAGACTCACAACCTGTCCTTCCA...CCAATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp CTCTGCAAAGCTCAGGAGCCCCCGGAATTCCTTGAGGCAGAAAGTGATGGCCACGTGGCTGCCTGGTATTaGTGGAAGAAGAGCGGGGCA +
Preference number: 4 (lower is better)
Translates to: LCKAQEPPEFLEAESDGHVAAWY*WKKSGA
Trigger: TGCCCCGCTCTTCTTCCAGCAATACCAGGCAGCCAC...GTGGCCATCACTTTCTGCCTCAAGGAATTCCGGGGGCTCCTGAGCTTTGCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR GCA 90 bp TTGGCAGTGCTGTCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTGCTCCGGGGCCATTCAGGGAGATaGAGCATTTTTCCACCGTCT +
Preference number: 4 (lower is better)
Translates to: LAVLSNLQCSWTTRRLLRGHSGR*SIFPPS
Trigger: AGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCC...CCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGACAGCACTGCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR GCA 90 bp AACTTGTCAGCTCCACGGGGGTCCCAGATGCATGCCCAGGACTTCAGGAAGGAACCATGGCTTTGGCAGTaGTGTCTGCCTCCTCCTCGT +
Preference number: 4 (lower is better)
Translates to: NLSAPRGSQMHAQDFRKEPWLWQ*CLPPPR
Trigger: ACGAGGAGGAGGCAGACAGCACTGCCAAAGCCATGG...TTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGTGGAGCTGACAAGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp ACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCTCACATCTAAGACACTaGCTGGCAGCTCTTCTGCAC +
Preference number: 4 (lower is better)
Translates to: TVTASWGLREAVKQLSSSSHLRH*LAALLH
Trigger: GTGCAGAAGAGCTGCCAGGCAGTGTCTTAGATGTGA...GCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp ACGGGGGTCCCAGATGCATGCCCAGGACTTCAGGAAGGAACAGGTCATGATTGGCTTCCTGCCTGCACCTaGGGTGACTGTGAGCAGGAT +
Preference number: 4 (lower is better)
Translates to: TGVPDACPGLQEGTGHDWLPACT*GDCEQD
Trigger: ATCCTGCTCACAGTCACCGCAGGTGCAGGCAGGAAG...CCAATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp GGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGATCATGTACTGTCGAACTTGCAATaGAGCTGGACCACCAGGCGG +
Preference number: 4 (lower is better)
Translates to: GQHPRALIAYSGFHGDHVLSNLQ*SWTTRR
Trigger: CCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGACAG...TACATGATCGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp GCTCCGGCCATTCAGGGAGATGCAGCATTTTTCCACCGTCTTCTCCAGCATCGCAACTTGCAATGCAGCTaGACCACCAGGCGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: APAIQGDAAFFHRLLQHRNLQCS*TTRRLL
Trigger: GAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTT...GCGATGCTGGAGAAGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp CACCAGGCGGCTGCTCCGGCCATTCAGGGAGATGCAGCATTTTTCCACCGTCTTGTGGCCAAGACAAAGTaGCCGTCCAGCAAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: HQAAAPAIQGDAAFFHRLVAKTK*PSSKES
Trigger: GGACTCTTTGCTGGACGGCCACTTTGTCTTGGCCAC...AAGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp CTTTACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCGGTGTCTGAGAGTGTaGCCAAGACAAAGTGGCCGT +
Preference number: 4 (lower is better)
Translates to: LYSDSQLGPARGSETAQLRCLRV*PRQSGR
Trigger: ACGGCCACTTTGTCTTGGCCACACTCTCAGACACCG...GAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGTAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp ACTTGCAATGCAGCTGGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATGCACATCTCAGTCACCATaGCTTTGGCAGTGCTGTCGA +
Preference number: 4 (lower is better)
Translates to: TCNAAGPPGGCSGHSGRCTSQSP*LWQCCR
Trigger: TCGACAGCACTGCCAAAGCCATGGTGACTGAGATGT...GCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CAA 72 bp GTGGCCAAGACAAAGTGGCCGTCCAGCAAAGAGTCCTaGATGGTGAAGATGGCGGGCCTGCCTGGAGCATCA +
Preference number: 4 (lower is better)
Translates to: VAKTKWPSSKES*MVKMAGLPGAS
Trigger: TGATGCTCCAGGCAGGCCCGCCATCTTCACCATCAAGGACTCTTTGCTGGACGGCCACTTTGTCTTGGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR TCA 90 bp AGTGGTTTCCATGGCGATCATGTAAGAGTCAATGTCGTCATTGGCAAAGTCGTCCAGCGCAGCAGGTCCTaGCCAGGGGTGGCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: SGFHGDHVRVNVVIGKVVQRSRS*PGVAAW
Trigger: CCAGGCAGCCACCCCTGGTCAGGACCTGCTGCGCTG...GACGACTTTGCCAATGACGACATTGACTCTTACATGATCGCCATGGAAACCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR GCA 90 bp GAGTGCGAGTCGGTGTCTGAGAGTGTGGCCAAGACAAAGTGGCCGTCCAGCAAACTGACCAGGGGTGGCTaGCTGGTATTGCTGGAAGAA +
Preference number: 4 (lower is better)
Translates to: ECESVSESVAKTKWPSSKLTRGG*LVLLEE
Trigger: TTCTTCCAGCAATACCAGGCAGCCACCCCTGGTCAG...TTTGCTGGACGGCCACTTTGTCTTGGCCACACTCTCAGACACCGACTCGCACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR GCA 90 bp AGCAGCACCTACTATGACATTTTCCTTAGGAAGGTGAGCCTGAGGGAGACAGGTCGTCCGGGTGGGGTGTaGTGTGAGCCTGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: SSTYYDIFLRKVSLRETGRPGGV*CEPGAE
Trigger: CTCAGCTCCAGGCTCACAGCACACCCCACCCGGACG...ACCTGTCTCCCTCAGGCTCACCTTCCTAAGGAAAATGTCATAGTAGGTGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp CCTAGCCACACACTCGGGTCCAAGGCTCTTAGAATTCCAAGTCAGCGCCAAAGACACGGGGGTCCCAGATaGATGCCCAGGACTTCAGGA +
Preference number: 4 (lower is better)
Translates to: PSHTLGSKALRIPSQRQRHGGPR*MPRTSG
Trigger: TCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGTG...TCTTTGGCGCTGACTTGGAATTCTAAGAGCCTTGGACCCGAGTGTGTGGCTAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp TTTACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCGATGGCGGGCCTGCCTaGAGCATCAAAATGAATGCT +
Preference number: 4 (lower is better)
Translates to: FTVTASWGLREAVKQLSSDGGPA*SIKMNA
Trigger: AGCATTCATTTTGATGCTCCAGGCAGGCCCGCCATC...GGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp ACGGGGGTCCCAGATGCATGCCCAGGACTTCAGGAAGGAACAGGTCATGATTGGGTGGCCAAGACAAAGTaGCCGTCCAGCAAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: TGVPDACPGLQEGTGHDWVAKTK*PSSKES
Trigger: GGACTCTTTGCTGGACGGCCACTTTGTCTTGGCCAC...CCAATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp CCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGATCATGTAAGAGTCAATTCTTCCTCCTCGGAGTaGGGACCGGGGCTCTTGGGG +
Preference number: 4 (lower is better)
Translates to: PRALIAYSGFHGDHVRVNSSSSE*GPGLLG
Trigger: CCCCAAGAGCCCCGGTCCCCACTCCGAGGAGGAAGA...ATTGACTCTTACATGATCGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
3UTR CAA 72 bp CTGGCAGCCGGATCCTGGGGCAACCCATCTGGTCTCTaGAATAAAGGTCAAAGCTGGATTCTCGCCATGGCC +
Preference number: 4 (lower is better)
Translates to: LAAGSWGNPSGL*NKGQSWILAMA
Trigger: GGCCATGGCGAGAATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCCGGCTGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp CCAGGACTTCAGGAAGGAACAGGTCATGATTGGCAGAGAAGCTGGATCACCAGGAACTTGCAATGCAGCTaGACCACCAGGCGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: PGLQEGTGHDWQRSWITRNLQCS*TTRRLL
Trigger: GAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTT...CCTGGTGATCCAGCTTCTCTGCCAATCATGACCTGTTCCTTCCTGAAGTCCTGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp CTCTGCAAAGCTCAGGAGCCCCCGGAATTCCTTGAGGCAGAAAGTGATGGCCACGATGGCGGGCCTGCCTaGAGCATCAAAATGAATGCT +
Preference number: 4 (lower is better)
Translates to: LCKAQEPPEFLEAESDGHDGGPA*SIKMNA
Trigger: AGCATTCATTTTGATGCTCCAGGCAGGCCCGCCATC...GTGGCCATCACTTTCTGCCTCAAGGAATTCCGGGGGCTCCTGAGCTTTGCAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp AAGTTTGCTGACTCTGCAAAGCTCAGGAGCCCCCGGAATTCCTTGAGGCAGAAACCCTACCTTCTTGGGTaGGGGAGTCCCAGGCACTGT +
Preference number: 4 (lower is better)
Translates to: KFADSAKLRSPRNSLRQKPYLLG*GSPRHC
Trigger: ACAGTGCCTGGGACTCCCCCACCCAAGAAGGTAGGG...TTTCTGCCTCAAGGAATTCCGGGGGCTCCTGAGCTTTGCAGAGTCAGCAAACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR TCA 90 bp GGCTTTGGCAGTGCTGTCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTGCTAAGATTCAAGTTTGCTaGCTCTGCAAAGCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: GFGSAVELAMQLDHQAAAKIQVC*LCKAQE
Trigger: CTCCTGAGCTTTGCAGAGTCAGCAAACTTGAATCTT...AGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGACAGCACTGCCAAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR TCA 90 bp ATCTCAGTCACCATGGCTTTGGCAGTGCTGTCGAACTTGCAATGCAGCTGGACCGTGCGAGTCGGTGTCTaGGAGTGTGGCCAAGACAAA +
Preference number: 4 (lower is better)
Translates to: ISVTMALAVLSNLQCSWTVRVGV*ECGQDK
Trigger: TTTGTCTTGGCCACACTCTCAGACACCGACTCGCAC...GGTCCAGCTGCATTGCAAGTTCGACAGCACTGCCAAAGCCATGGTGACTGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR GCA 90 bp AAGTTTGCTGACTCTGCAAAGCTCAGGAGCCCCCGGAATTCCTTGAGGCAGAAATCCTGGGCCTGCAGCTaGTGGAAATCCTCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: KFADSAKLRSPRNSLRQKSWACS*WKSSSP
Trigger: TGGAGAGGAGGATTTCCAGCAGCTGCAGGCCCAGGA...TTTCTGCCTCAAGGAATTCCGGGGGCTCCTGAGCTTTGCAGAGTCAGCAAACTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp CCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGATCATGTAAGAGTCAATGGTCCTGACCAGGGGTaGCTGCCTGGTATTGCTGGA +
Preference number: 4 (lower is better)
Translates to: PRALIAYSGFHGDHVRVNGPDQG*LPGIAG
Trigger: TCCAGCAATACCAGGCAGCCACCCCTGGTCAGGACC...ATTGACTCTTACATGATCGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp ATCTCAGTCACCATGGCTTTGGCAGTGCTGTCGAACTTGCAATGCAGCTGGACCCGGTGTCTGAGAGTGTaGCCAAGACAAAGTGGCCGT +
Preference number: 4 (lower is better)
Translates to: ISVTMALAVLSNLQCSWTRCLRV*PRQSGR
Trigger: ACGGCCACTTTGTCTTGGCCACACTCTCAGACACCG...GGTCCAGCTGCATTGCAAGTTCGACAGCACTGCCAAAGCCATGGTGACTGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CCA 90 bp CCAAAGAGTATCAGGAAAGCAAGGAAAACTTGTCAGCTCCACGGGGGTCCCAGACAGGCCCGACCGCTGTaGGACAGCTTTACAGTGACA +
Preference number: 4 (lower is better)
Translates to: PKSIRKARKTCQLHGGPRQARPL*DSFTVT
Trigger: TGTCACTGTAAAGCTGTCCCACAGCGGTCGGGCCTG...TCTGGGACCCCCGTGGAGCTGACAAGTTTTCCTTGCTTTCCTGATACTCTTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp GCATGCCCAGGACTTCAGGAAGGAACAGGTCATGATTGGCAGAGAAGCTGGATCCTGGAAAGTCCTGATTaGCTGGGGGTTGTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: ACPGLQEGTGHDWQRSWILESPD*LGVVGR
Trigger: TCTCCCCACAACCCCCAGCCAATCAGGACTTTCCAG...GATCCAGCTTCTCTGCCAATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp AGCAGCACCTACTATGACATTTTCCTTAGGAAGGTGAGCCTGAGGGAGACAGGTGGGGTCCCAGATGCATaGCCAGGACTTCAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: SSTYYDIFLRKVSLRETGGVPDA*PGLQEG
Trigger: TCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCC...ACCTGTCTCCCTCAGGCTCACCTTCCTAAGGAAAATGTCATAGTAGGTGCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp GAAAGCAAGGAAAACTTGTCAGCTCCACGGGGGTCCCAGATGCATGCCCAGGACAGCTGGAGTATAGCCTaGGGCTCAATGAGAAATAAG +
Preference number: 4 (lower is better)
Translates to: ESKENLSAPRGSQMHAQDSWSIA*GSMRNK
Trigger: CTTATTTCTCATTGAGCCTCAGGCTATACTCCAGCT...GTCCTGGGCATGCATCTGGGACCCCCGTGGAGCTGACAAGTTTTCCTTGCTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR GCA 90 bp ATTTTTCCACCGTCTTCTCCAGCATCGCCAGTGAGCGGAAGACAGACAGGAAAGCAGTGCTGTCGAACTTaGAATGCAGCTGGACCACCA +
Preference number: 4 (lower is better)
Translates to: IFPPSSPASPVSGRQTGKQCCRT*NAAGPP
Trigger: TGGTGGTCCAGCTGCATTGCAAGTTCGACAGCACTG...CTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGAAAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR GCA 90 bp CCAAAGAGTATCAGGAAAGCAAGGAAAACTTGTCAGCTCCACGGGGGTCCCAGAGGCCATTCAGGGAGATaGAGCATTTTTCCACCGTCT +
Preference number: 4 (lower is better)
Translates to: PKSIRKARKTCQLHGGPRGHSGR*SIFPPS
Trigger: AGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCC...TCTGGGACCCCCGTGGAGCTGACAAGTTTTCCTTGCTTTCCTGATACTCTTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CCA 90 bp CCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGATCATGTAAGAGTCAATCAGTCACCATGGCTTTaGCAGTGCTGTCGAACTTGC +
Preference number: 4 (lower is better)
Translates to: PRALIAYSGFHGDHVRVNQSPWL*QCCRTC
Trigger: GCAAGTTCGACAGCACTGCCAAAGCCATGGTGACTG...ATTGACTCTTACATGATCGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR TCA 90 bp AAAGTGGCCGTCCAGCAAAGAGTCCTTGATGGTGAAGATGGCGGGCCTGCCTGGCCTGGAGCATCAAAATaGATGCTAAGATTCAAGTTT +
Preference number: 4 (lower is better)
Translates to: KVAVQQRVLDGEDGGPAWPGASK*MLRFKF
Trigger: AAACTTGAATCTTAGCATTCATTTTGATGCTCCAGG...CCAGGCAGGCCCGCCATCTTCACCATCAAGGACTCTTTGCTGGACGGCCACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR TCA 90 bp AGCAGCACCTACTATGACATTTTCCTTAGGAAGGTGAGCCTGAGGGAGACAGGTGGAAGGAACAGGTCATaGTTGGCAGAGAAGCTGGAT +
Preference number: 4 (lower is better)
Translates to: SSTYYDIFLRKVSLRETGGRNRS*LAEKLD
Trigger: ATCCAGCTTCTCTGCCAATCATGACCTGTTCCTTCC...ACCTGTCTCCCTCAGGCTCACCTTCCTAAGGAAAATGTCATAGTAGGTGCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR TCA 90 bp CCAGGACTTCAGGAAGGAACAGGTCATGATTGGCAGAGAAGCTGGATCACCAGGCCTGGAGCATCAAAATaGATGCTAAGATTCAAGTTT +
Preference number: 4 (lower is better)
Translates to: PGLQEGTGHDWQRSWITRPGASK*MLRFKF
Trigger: AAACTTGAATCTTAGCATTCATTTTGATGCTCCAGG...CCTGGTGATCCAGCTTCTCTGCCAATCATGACCTGTTCCTTCCTGAAGTCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS GCA 90 bp GCCAGCCAGCTGCTCCTGGCTCCCCCGGCACGCCTCGGCCTTCCGTaGCCCTGGAGATCGGGGCGTTCCGCGGGCCGCGCACCGGATTGC +
Preference number: 5 (lower is better)
Translates to: ASQLLLAPPARLGLP*PWRSGRSAGRAPDC
Trigger: GCAATCCGGTGCGCGGCCCGCGGAACGCCCCGATCTCCAGGGGCACGGAAGGCCGAGGCGTGCCGGGGGAGCCAGGAGCAGCTGGCTGGC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000543808.5
ENST00000621995.1
CDS TCA 90 bp AGGCTCTGCCGTCACGTGACGGCGCACGTTGTCCGGGGTGTCACGTaGCCGGGGAGGCCCGCGGCGCCCGCCAGCCAGCTGCTCCTGGCT +
Preference number: 5 (lower is better)
Translates to: RLCRHVTAHVVRGVT*PGRPAAPASQLLLA
Trigger: AGCCAGGAGCAGCTGGCTGGCGGGCGCCGCGGGCCTCCCCGGTCACGTGACACCCCGGACAACGTGCGCCGTCACGTGACGGCAGAGCCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000543808.5
ENST00000621995.1
CDS CCA 90 bp GGCCTTGCCGAGCACTGCGGGGAGAAGAGCGGAAGGGGGTTAGGCTaGCGGCTCCGCGGCTGCTGCACCGCCGCTGCCAGGCCGACCTGC +
Preference number: 5 (lower is better)
Translates to: GLAEHCGEKSGRGLG*RLRGCCTAAARPTC
Trigger: GCAGGTCGGCCTGGCAGCGGCGGTGCAGCAGCCGCGGAGCCGCCAGCCTAACCCCCTTCCGCTCTTCTCCCCGCAGTGCTCGGCAAGGCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS CCA 90 bp ATCTGTCGGCCGCGCGCAGGCCCTCGGCTCGGGGTGACAAGACGCTaGCGCGGGCAAGCGGGGCTTCGCGGGCCACAGCCAGATCTCGGC +
Preference number: 5 (lower is better)
Translates to: ICRPRAGPRLGVTRR*RGQAGLRGPQPDLG
Trigger: GCCGAGATCTGGCTGTGGCCCGCGAAGCCCCGCTTGCCCGCGCCAGCGTCTTGTCACCCCGAGCCGAGGGCCTGCGCGCGGCCGACAGAT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS TCA 90 bp CAGCATCCCATATCTGTCGGCCGCGCGCAGGCCCTCGGCTCGGGGTaGCAAGACGCTGGCGCGGGCAAGCGGGGCTTCGCGGGCCACAGC +
Preference number: 5 (lower is better)
Translates to: QHPISVGRAQALGSG*QDAGAGKRGFAGHS
Trigger: GCTGTGGCCCGCGAAGCCCCGCTTGCCCGCGCCAGCGTCTTGTCACCCCGAGCCGAGGGCCTGCGCGCGGCCGACAGATATGGGATGCTG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS GCA 90 bp CGGAAGGGGGTTAGGCTGGCGGCTCCGCGGCTGCTGCACCGCCGCTaGCAGGCCGACCTGCACTCACCCTTCACGTTGCCGCCCGTGACC +
Preference number: 5 (lower is better)
Translates to: RKGVRLAAPRLLHRR*QADLHSPFTLPPVT
Trigger: GGTCACGGGCGGCAACGTGAAGGGTGAGTGCAGGTCGGCCTGGCAGCGGCGGTGCAGCAGCCGCGGAGCCGCCAGCCTAACCCCCTTCCG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS TCA 90 bp GCCGCTGCCAGGCCGACCTGCACTCACCCTTCACGTTGCCGCCCGTaGCCAGGCACTTCATGCTGCCCCAGCGCTCCGCCAGCGGCCAAC +
Preference number: 5 (lower is better)
Translates to: AAARPTCTHPSRCRP*PGTSCCPSAPPAAN
Trigger: GTTGGCCGCTGGCGGAGCGCTGGGGCAGCATGAAGTGCCTGGTCACGGGCGGCAACGTGAAGGGTGAGTGCAGGTCGGCCTGGCAGCGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS GCA 90 bp GGGGAGAAGAGCGGAAGGGGGTTAGGCTGGCGGCTCCGCGGCTGCTaGACCGCCGCTGCCAGGCCGACCTGCACTCACCCTTCACGTTGC +
Preference number: 5 (lower is better)
Translates to: GEKSGRGLGWRLRGC*TAAARPTCTHPSRC
Trigger: GCAACGTGAAGGGTGAGTGCAGGTCGGCCTGGCAGCGGCGGTGCAGCAGCCGCGGAGCCGCCAGCCTAACCCCCTTCCGCTCTTCTCCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS GCA 90 bp TGCGGGGAGAAGAGCGGAAGGGGGTTAGGCTGGCGGCTCCGCGGCTaGTGCACCGCCGCTGCCAGGCCGACCTGCACTCACCCTTCACGT +
Preference number: 5 (lower is better)
Translates to: CGEKSGRGLGWRLRG*CTAAARPTCTHPSR
Trigger: ACGTGAAGGGTGAGTGCAGGTCGGCCTGGCAGCGGCGGTGCAGCAGCCGCGGAGCCGCCAGCCTAACCCCCTTCCGCTCTTCTCCCCGCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS-3UTR CAA 90 bp TGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGACCGAGCACCTTCACGTaGCCGCCCGTGACCAGGCAC +
Preference number: 5 (lower is better)
Translates to: WGAEHVGARGWVEDGLQGPSTFT*PPVTRH
Trigger: GTGCCTGGTCACGGGCGGCAACGTGAAGGTGCTCGG...TCCCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS CCA 90 bp CCGAGGCCTCAGGAGCGTGTGCGCGCCGGGACGCCCCAGAGAATTTaGAAGCGCTGGTCCCGGAGGCAAGGCCGGCTTGGTCTCCTCTCC +
Preference number: 5 (lower is better)
Translates to: PRPQERVRAGTPQRI*KRWSRRQGRLGLLS
Trigger: GGAGAGGAGACCAAGCCGGCCTTGCCTCCGGGACCAGCGCTTCCAAATTCTCTGGGGCGTCCCGGCGCGCACACGCTCCTGAGGCCTCGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS-3UTR CAA 90 bp GGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGAGTGAGCGGAACTTCTaGGGTGGGGGAGTCCCAGGC +
Preference number: 5 (lower is better)
Translates to: GPRLQLRATAGQVVGLQPSERNF*GGGVPG
Trigger: GCCTGGGACTCCCCCACCCAAGAAGTTCCGCTCACT...CGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CAA 90 bp CCAGGCCCGACCGCTGTGGGACAGCTTTACAGTGACAGCCAGCTGGGGCCTGCGGGTCTCCAGCCGTGCTaGGCCTCAGGGCTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: PGPTAVGQLYSDSQLGPAGLQPC*ASGLAA
Trigger: GGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACC...CGCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCCACAGCGGTCGGGCCTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS GCA 90 bp CCACGCCAGCCCCTTTCCTCAGAACGCCGAGGCCTCAGGAGCGTGTaGGCGCCGGGACGCCCCAGAGAATTTGGAAGCGCTGGTCCCGGA +
Preference number: 5 (lower is better)
Translates to: PRQPLSSERRGLRSV*APGRPREFGSAGPG
Trigger: TCCGGGACCAGCGCTTCCAAATTCTCTGGGGCGTCCCGGCGCGCACACGCTCCTGAGGCCTCGGCGTTCTGAGGAAAGGGGCTGGCGTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS-3UTR CAA 90 bp CCAGGCCCGACCGCTGTGGGACAGCTTTACAGTGACAGCCAGCTGGGGCCTGCGCCGAGCACCTTCACGTaGCCGCCCGTGACCAGGCAC +
Preference number: 5 (lower is better)
Translates to: PGPTAVGQLYSDSQLGPAPSTFT*PPVTRH
Trigger: GTGCCTGGTCACGGGCGGCAACGTGAAGGTGCTCGG...CGCAGGCCCCAGCTGGCTGTCACTGTAAAGCTGTCCCACAGCGGTCGGGCCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CAA 90 bp TGGGGCGCGGAGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTGCAGGGAAGGGAGTGGACGGCCTaGCCGAGCACCTTCACGTTG +
Preference number: 5 (lower is better)
Translates to: WGAEHVGARGWVEDGLQGREWTA*PSTFTL
Trigger: CAACGTGAAGGTGCTCGGCAAGGCCGTCCACTCCCT...TCCCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS GCA 90 bp GGGAGAGCCCGTCCTCCAAGGGTTCCAGGTAGAGCTCGTCCCCGATaGGGGACAGGGAGTGGACGGCCTTGCCGAGCAAGGCTCTGCCGT +
Preference number: 5 (lower is better)
Translates to: GRARPPRVPGRARPR*GTGSGRPCRARLCR
Trigger: ACGGCAGAGCCTTGCTCGGCAAGGCCGTCCACTCCCTGTCCCGCATCGGGGACGAGCTCTACCTGGAACCCTTGGAGGACGGGCTCTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000543808.5
CDS CCA 90 bp CAGGAGCGTGTGCGCGCCGGGACGCCCCAGAGAATTTGGAAGCGCTaGTCCCGGAGGCAAGGCCGGCTTGGTCTCCTCTCCTCAATCCCC +
Preference number: 5 (lower is better)
Translates to: QERVRAGTPQRIWKR*SRRQGRLGLLSSIP
Trigger: GGGGATTGAGGAGAGGAGACCAAGCCGGCCTTGCCTCCGGGACCAGCGCTTCCAAATTCTCTGGGGCGTCCCGGCGCGCACACGCTCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS-3UTR CAA 90 bp TTGGGAGTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCACACACTCGGGGGTGGCTGCCTGGTATaGCTGGAAGAAGAGCGGGGC +
Preference number: 5 (lower is better)
Translates to: LGVSAPGPSQGNPSHTLGGGCLV*LEEERG
Trigger: GCCCCGCTCTTCTTCCAGCAATACCAGGCAGCCACC...CCCGAGTGTGTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS GCA 90 bp GGGAGAGCCCGTCCTCCAAGGGTTCCAGGTAGAGCTCGTCCCCGATaGGGGACAGGGAGTGGACGGCCTTGCCGAGCACCTTCACGTTGC +
Preference number: 5 (lower is better)
Translates to: GRARPPRVPGRARPR*GTGSGRPCRAPSRC
Trigger: GCAACGTGAAGGTGCTCGGCAAGGCCGTCCACTCCCTGTCCCGCATCGGGGACGAGCTCTACCTGGAACCCTTGGAGGACGGGCTCTCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000307980.7
ENST00000542139.1
ENST00000544620.5
CDS GCA 90 bp TTGCGAAGGTCAGAGAGGACGCAGCTGTGGGGCGCGAGGTCCCTGTaGAGTGGACCGAGTGCTGGACTCGGAGTCGGAGTGTGGGGGCGA +
Preference number: 5 (lower is better)
Translates to: LRRSERTQLWGARSL*SGPSAGLGVGVWGR
Trigger: TCGCCCCCACACTCCGACTCCGAGTCCAGCACTCGGTCCACTGCACAGGGACCTCGCGCCCCACAGCTGCGTCCTCTCTGACCTTCGCAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS-3UTR CAA 90 bp TTGGGAGTCTCGGCACCGGGCCCCAGCCAGGGCAACCCTAGCCACACACTCGGGAGCCCCCGGAATTCCTaGAGGCAGAAAGTGATGGCC +
Preference number: 5 (lower is better)
Translates to: LGVSAPGPSQGNPSHTLGSPRNS*RQKVMA
Trigger: GGCCATCACTTTCTGCCTCAAGGAATTCCGGGGGCT...CCCGAGTGTGTGGCTAGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CAA 90 bp GCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGTCTCCAGCCGTGGAAAGCAAGGAAAACTaGTCAGCTCCACGGGGGTCC +
Preference number: 5 (lower is better)
Translates to: AEAAAQGNGRPGRGSPAVESKEN*SAPRGS
Trigger: GGACCCCCGTGGAGCTGACAAGTTTTCCTTGCTTTC...CACGGCTGGAGACCCACGACCTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS GCA 90 bp GGCGAGCTCTCTGGGGTCACCCACTTAGTAGAGTTCCCGGGCGTCTaGCGGGGGATACAGGGTGCAAGCAAGACCATCGCACCCACTCTG +
Preference number: 5 (lower is better)
Translates to: GELSGVTHLVEFPGV*RGIQGASKTIAPTL
Trigger: CAGAGTGGGTGCGATGGTCTTGCTTGCACCCTGTATCCCCCGGCAGACGCCCGGGAACTCTACTAAGTGGGTGACCCCAGAGAGCTCGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS-3UTR CAA 90 bp TTTACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCTCTGCACAGAGCCGCTaGGGAGTCTCGGCACCGGGC +
Preference number: 5 (lower is better)
Translates to: FTVTASWGLREAVKQLSSSAQSR*GVSAPG
Trigger: GCCCGGTGCCGAGACTCCCAAGCGGCTCTGTGCAGA...GGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGTAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS GCA 90 bp GACCCTGGCCTGGGTCCCTGTTTCAGAGCTGCAGCCCTCAGTTCCTaGAAACCAGTGCTTTCTGGCTGCCCCAGGTGGATGTGTGCTGGG +
Preference number: 5 (lower is better)
Translates to: DPGLGPCFRAAALSS*KPVLSGCPRWMCAG
Trigger: CCCAGCACACATCCACCTGGGGCAGCCAGAAAGCACTGGTTTGCAGGAACTGAGGGCTGCAGCTCTGAAACAGGGACCCAGGCCAGGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS GCA 90 bp CACCCACTTAGTAGAGTTCCCGGGCGTCTGCCGGGGGATACAGGGTaGAAGCAAGACCATCGCACCCACTCTGGGCCTGAGACTCGGACT +
Preference number: 5 (lower is better)
Translates to: HPLSRVPGRLPGDTG*KQDHRTHSGPETRT
Trigger: AGTCCGAGTCTCAGGCCCAGAGTGGGTGCGATGGTCTTGCTTGCACCCTGTATCCCCCGGCAGACGCCCGGGAACTCTACTAAGTGGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS-3UTR CAA 90 bp GGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGATCATGTAGGGAGAGCCTTCACGTaGCCGCCCGTGACCAGGCAC +
Preference number: 5 (lower is better)
Translates to: GQHPRALIAYSGFHGDHVGRAFT*PPVTRH
Trigger: GTGCCTGGTCACGGGCGGCAACGTGAAGGCTCTCCC...TACATGATCGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CAA 90 bp ACTTGCAATGCAGCTGGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATGCAGCCCCCGGAATTCCTaGAGGCAGAAAGTGATGGCC +
Preference number: 5 (lower is better)
Translates to: TCNAAGPPGGCSGHSGRCSPRNS*RQKVMA
Trigger: GGCCATCACTTTCTGCCTCAAGGAATTCCGGGGGCT...GCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CAA 90 bp GTCCTGATTGGCTGGGGGTTGTGGGGAGATAACGGCCCAGGCCCGACCGCTGTGACAGGCTTCAGGTTCTaGGTTCAGCCTTCACCCTCA +
Preference number: 5 (lower is better)
Translates to: VLIGWGLWGDNGPGPTAVTGFRF*VQPSPS
Trigger: TGAGGGTGAAGGCTGAACCAAGAACCTGAAGCCTGT...CACAGCGGTCGGGCCTGGGCCGTTATCTCCCCACAACCCCCAGCCAATCAGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CAA 90 bp ACAGTGACAGCCAGCTGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCGACAGGTTTCCAGCCTaGGCCAGCTGGAGTATAGCC +
Preference number: 5 (lower is better)
Translates to: TVTASWGLREAVKQLSSSDRFPA*ASWSIA
Trigger: GGCTATACTCCAGCTGGCCAAGGCTGGAAACCTGTC...GCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCAGCTGGCTGTCACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CAA 90 bp GATGACCCTGCGGCCACGGCCAATGCCCAGCGTCACTTCAGCCAGTGCAGGAGAACTCACAGTCCGAACTaGCAATGCAGCTGGACCACC +
Preference number: 5 (lower is better)
Translates to: DDPAATANAQRHFSQCRRTHSPN*QCSWTT
Trigger: GGTGGTCCAGCTGCATTGCAAGTTCGGACTGTGAGT...TCTCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCGTGGCCGCAGGGTCATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS GCA 90 bp TGGGTCCCTGTTTCAGAGCTGCAGCCCTCAGTTCCTGCAAACCAGTaGTTTCTGGCTGCCCCAGGTGGATGTGTGCTGGGGATGGCGTTG +
Preference number: 5 (lower is better)
Translates to: WVPVSELQPSVPANQ*FLAAPGGCVLGMAL
Trigger: CAACGCCATCCCCAGCACACATCCACCTGGGGCAGCCAGAAAGCACTGGTTTGCAGGAACTGAGGGCTGCAGCTCTGAAACAGGGACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CCA 90 bp GGGCTTCGTCTAGTCCAAGGCCTCTGGGTACAGGCTTCAGGTTCTTaGTTCAGCCTTCACCCTCACTGTCTTCCGCCAGCACAGGGCTGG +
Preference number: 5 (lower is better)
Translates to: GLRLVQGLWVQASGS*FSLHPHCLPPAQGW
Trigger: CCAGCCCTGTGCTGGCGGAAGACAGTGAGGGTGAAGGCTGAACCAAGAACCTGAAGCCTGTACCCAGAGGCCTTGGACTAGACGAAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307980.7
ENST00000535644.1
CDS-3UTR CAA 90 bp GCAGCTGGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATGCAGCATTTTTGCAGTGCTGTCGAACTaGCAATGCAGCTGGACCACC +
Preference number: 5 (lower is better)
Translates to: AAGPPGGCSGHSGRCSIFAVLSN*QCSWTT
Trigger: GGTGGTCCAGCTGCATTGCAAGTTCGACAGCACTGC...AAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS GCA 90 bp TCTTCCGCACCCCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGATGCAGCATTTTTCCACCGTCTTCT +
Preference number: 5 (lower is better)
Translates to: SSAPRTCNAAGPPGG*SGHSGRCSIFPPSS
Trigger: AGAAGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGGGGTGCGGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000307980.7
ENST00000529100.5
ENST00000530934.5
ENST00000541132.1
ENST00000543808.5
CDS GCA 90 bp TCTTCCGCACCCCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGATGCAGCATTTTTCCACCGTCTTCA +
Preference number: 5 (lower is better)
Translates to: SSAPRTCNAAGPPGG*SGHSGRCSIFPPSS
Trigger: TGAAGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGGGGTGCGGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000544620.5
CDS GCA 90 bp CCAGCAGCAATCCCCAACTCTAGAAAGAAGTCAAAGCAGCTTGCTTaGAGCAGCCGGGAGTGGGAGGTGGCTGCTCCTTCCGGCTTCGAG +
Preference number: 5 (lower is better)
Translates to: PAAIPNSRKKSKQLA*SSREWEVAAPSGFE
Trigger: CTCGAAGCCGGAAGGAGCAGCCACCTCCCACTCCCGGCTGCTGCAAGCAAGCTGCTTTGACTTCTTTCTAGAGTTGGGGATTGCTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CCA 90 bp TCTCTGCAACAAGCTCTCCTGTCCCATGCAGGCCCACACCCATCATaGGCCCAGCATGTAACTCTGGGAAAAGGGCTCCCACGTCACCTC +
Preference number: 5 (lower is better)
Translates to: SLQQALLSHAGPHPS*AQHVTLGKGLPRHL
Trigger: GAGGTGACGTGGGAGCCCTTTTCCCAGAGTTACATGCTGGGCCCATGATGGGTGTGGGCCTGCATGGGACAGGAGAGCTTGTTGCAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000529100.5
ENST00000530934.5
CDS-3UTR CAA 90 bp CCACGGGGGTCCCAGATGCATGCCCAGGACTTCAGGAAGGAACAGGTCATGATTTTCCGCACCCCGAACTaGCAATGCAGCTGGACCACC +
Preference number: 5 (lower is better)
Translates to: PRGSQMHAQDFRKEQVMIFRTPN*QCSWTT
Trigger: GGTGGTCCAGCTGCATTGCAAGTTCGGGGTGCGGAA...AATCATGACCTGTTCCTTCCTGAAGTCCTGGGCATGCATCTGGGACCCCCGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CAA 90 bp TGGGGCCTGCGAGAGGCAGTGAAACAGCTCAGCTCCAGCAAGCCCACCTTTCTGGAGTCAATGTCGTCATaGGCAAAGTCGTCCGGGTGG +
Preference number: 5 (lower is better)
Translates to: WGLREAVKQLSSSKPTFLESMSS*AKSSGW
Trigger: CCACCCGGACGACTTTGCCAATGACGACATTGACTC...CAGAAAGGTGGGCTTGCTGGAGCTGAGCTGTTTCACTGCCTCTCGCAGGCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CAA 90 bp CAGTTCTGCCACTGGCTGGGGCTTCGTCTAGTCCAAGGCCTCTGGGTACAGGCTACCCGCGAGCCCTCATaGCCTATAGTGGTTTCCATG +
Preference number: 5 (lower is better)
Translates to: QFCHWLGLRLVQGLWVQATREPS*PIVVSM
Trigger: CATGGAAACCACTATAGGCAATGAGGGCTCGCGGGT...AGCCTGTACCCAGAGGCCTTGGACTAGACGAAGCCCCAGCCAGTGGCAGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS GCA 90 bp GGACTCACAGTCCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGATGCAGCATTTTTCCACCGTCTTCT +
Preference number: 5 (lower is better)
Translates to: GLTVRTCNAAGPPGG*SGHSGRCSIFPPSS
Trigger: AGAAGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGGACTGTGAGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS-3UTR CAA 90 bp ATTTTTCCACCGTCTTCTCCAGCATCGCCAGTGAGCGGAAGACAGACAGGAAAGCCAGTCCCTACCTTCTaGGGTGGGGGAGTCCCAGGC +
Preference number: 5 (lower is better)
Translates to: IFPPSSPASPVSGRQTGKPVPTF*GGGVPG
Trigger: GCCTGGGACTCCCCCACCCAAGAAGGTAGGGACTGG...CTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGAAAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CAA 90 bp CCAAAGAGTATCAGGAAAGCAAGGAAAACTTGTCAGCTCCACGGGGGTCCCAGAAGGGAGTGGACGGCCTaGCCGAGCACCTTCACGTTG +
Preference number: 5 (lower is better)
Translates to: PKSIRKARKTCQLHGGPRREWTA*PSTFTL
Trigger: CAACGTGAAGGTGCTCGGCAAGGCCGTCCACTCCCT...TCTGGGACCCCCGTGGAGCTGACAAGTTTTCCTTGCTTTCCTGATACTCTTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS-3UTR CAA 90 bp GAAATGGAGGGCAGCACCCGCGAGCCCTCATTGCCTATAGTGGTTTCCATGGCGTCAGTCACCATGGCTTaGGCAGTGCTGTCGAACTTG +
Preference number: 5 (lower is better)
Translates to: EMEGSTREPSLPIVVSMASVTMA*AVLSNL
Trigger: CAAGTTCGACAGCACTGCCAAAGCCATGGTGACTGA...CGCCATGGAAACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS GCA 90 bp GAAGTCAAAGCAGCTTGCTTGCAGCAGCCGGGAGTGGGAGGTGGCTaGTCCTTCCGGCTTCGAGGATCCTTTAAGGAAAAACGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: EVKAACLQQPGVGGG*SFRLRGSFKEKRQF
Trigger: AAACTGCCGTTTTTCCTTAAAGGATCCTCGAAGCCGGAAGGAGCAGCCACCTCCCACTCCCGGCTGCTGCAAGCAAGCTGCTTTGACTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS GCA 90 bp GAAAGACTGCATGGGATAAGACACCTCAGCCTAGCATCACATCTCTaGAACAAGCTCTCCTGTCCCATGCAGGCCCACACCCATCATGGG +
Preference number: 5 (lower is better)
Translates to: ERLHGIRHLSLASHL*NKLSCPMQAHTHHG
Trigger: CCCATGATGGGTGTGGGCCTGCATGGGACAGGAGAGCTTGTTGCAGAGATGTGATGCTAGGCTGAGGTGTCTTATCCCATGCAGTCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000529100.5
ENST00000530934.5
CDS-3UTR CAA 90 bp ATCTCAGTCACCATGGCTTTGGCAGTGCTGTCGAACTTGCAATGCAGCTGGACCACCCGCGAGCCCTCATaGCCTATAGTGGTTTCCATG +
Preference number: 5 (lower is better)
Translates to: ISVTMALAVLSNLQCSWTTREPS*PIVVSM
Trigger: CATGGAAACCACTATAGGCAATGAGGGCTCGCGGGT...GGTCCAGCTGCATTGCAAGTTCGACAGCACTGCCAAAGCCATGGTGACTGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS TCA 90 bp CAGGGAGATGCAGCATTTTTCCACCGTCTTCTCCAGCATCGCCAGTaGGCGGAAGACAGACAGGAAAGACTGCATGGGATAAGACACCTC +
Preference number: 5 (lower is better)
Translates to: QGDAAFFHRLLQHRQ*AEDRQERLHGIRHL
Trigger: GAGGTGTCTTATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGAAAAATGCTGCATCTCCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000529100.5
ENST00000530934.5
CDS-3UTR CAA 90 bp ATTTTTCCACCGTCTTCTCCAGCATCGCCAGTGAGCGGAAGACAGACAGGAAAGGAGTCAATGTCGTCATaGGCAAAGTCGTCCGGGTGG +
Preference number: 5 (lower is better)
Translates to: IFPPSSPASPVSGRQTGKESMSS*AKSSGW
Trigger: CCACCCGGACGACTTTGCCAATGACGACATTGACTC...CTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGAAAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS-3UTR CAA 90 bp TGGCTGGGGCTTCGTCTAGTCCAAGGCCTCTGGGTACAGGCTTCAGGTTCTTGGAACCCATCTGGTCTCTaGAATAAAGGTCAAAGCTGG +
Preference number: 5 (lower is better)
Translates to: WLGLRLVQGLWVQASGSWNPSGL*NKGQSW
Trigger: CCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTT...CCAAGAACCTGAAGCCTGTACCCAGAGGCCTTGGACTAGACGAAGCCCCAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307980.7
CDS TCA 90 bp CAGGGAGATGCAGCATTTTTCCACCGTCTTCTCCAGCATCGCCAGTaGGCGGAAGACAGACAGGAAAGACTTCATCAGGATCTTACAGCG +
Preference number: 5 (lower is better)
Translates to: QGDAAFFHRLLQHRQ*AEDRQERLHQDLTA
Trigger: CGCTGTAAGATCCTGATGAAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGAAAAATGCTGCATCTCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000307980.7
ENST00000538013.5
ENST00000541132.1
ENST00000542139.1
ENST00000543808.5
CDS GCA 90 bp CTCCCACGTCACCTCGGGCACTGGCATCCTTCTAGGCCTCATTCATaGTCTTCCTTATGCTTGGAATGCCTTGAAAGACCTGCTTACCTT +
Preference number: 5 (lower is better)
Translates to: LPRHLGHWHPSRPHS*SSLCLECLERPAYL
Trigger: AAGGTAAGCAGGTCTTTCAAGGCATTCCAAGCATAAGGAAGAGCATGAATGAGGCCTAGAAGGATGCCAGTGCCCGAGGTGACGTGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000530934.5
CDS CCA 90 bp TCTCCAGCATCGCCAGTGAGCGGAAGACAGACAGGAAAGACTGCATaGGATAAGACACCTCAGCCTAGCATCACATCTCTGCAACAAGCT +
Preference number: 5 (lower is better)
Translates to: SPASPVSGRQTGKTA*DKTPQPSITSLQQA
Trigger: AGCTTGTTGCAGAGATGTGATGCTAGGCTGAGGTGTCTTATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000529100.5
ENST00000530934.5
CDS TCA 90 bp TGGCGGGCCTGGAGCATCAAAATGAATGCTAAGATTCAAGTTTGCTaGCTCTGCAAAGCTCAGGAGCCCCCGGAATTCCTTGAGGCAGAA +
Preference number: 5 (lower is better)
Translates to: WRAWSIKMNAKIQVC*LCKAQEPPEFLEAE
Trigger: TTCTGCCTCAAGGAATTCCGGGGGCTCCTGAGCTTTGCAGAGTCAGCAAACTTGAATCTTAGCATTCATTTTGATGCTCCAGGCCCGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000529100.5
CDS GCA 72 bp CTGCTCCTGGCTCCCCCGGCACGCCTCGGCCTTCCGTaGCCCTGGAGATCGGGGCGTTCCGCGGGCCGCGCA +
Preference number: 6 (lower is better)
Translates to: LLLAPPARLGLP*PWRSGRSAGRA
Trigger: TGCGCGGCCCGCGGAACGCCCCGATCTCCAGGGGCACGGAAGGCCGAGGCGTGCCGGGGGAGCCAGGAGCAG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000543808.5
ENST00000621995.1
CDS CCA 72 bp CCGCGCGCAGGCCCTCGGCTCGGGGTGACAAGACGCTaGCGCGGGCAAGCGGGGCTTCGCGGGCCACAGCCA +
Preference number: 6 (lower is better)
Translates to: PRAGPRLGVTRR*RGQAGLRGPQP
Trigger: TGGCTGTGGCCCGCGAAGCCCCGCTTGCCCGCGCCAGCGTCTTGTCACCCCGAGCCGAGGGCCTGCGCGCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS TCA 72 bp CGTCACGTGACGGCGCACGTTGTCCGGGGTGTCACGTaGCCGGGGAGGCCCGCGGCGCCCGCCAGCCAGCTG +
Preference number: 6 (lower is better)
Translates to: RHVTAHVVRGVT*PGRPAAPASQL
Trigger: CAGCTGGCTGGCGGGCGCCGCGGGCCTCCCCGGTCACGTGACACCCCGGACAACGTGCGCCGTCACGTGACG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000543808.5
ENST00000621995.1
CDS TCA 72 bp ATATCTGTCGGCCGCGCGCAGGCCCTCGGCTCGGGGTaGCAAGACGCTGGCGCGGGCAAGCGGGGCTTCGCG +
Preference number: 6 (lower is better)
Translates to: ISVGRAQALGSG*QDAGAGKRGFA
Trigger: CGCGAAGCCCCGCTTGCCCGCGCCAGCGTCTTGTCACCCCGAGCCGAGGGCCTGCGCGCGGCCGACAGATAT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS GCA 72 bp AGCGGAAGGGGGTTAGGCTGGCGGCTCCGCGGCTGCTaGACCGCCGCTGCCAGGCCGACCTGCACTCACCCT +
Preference number: 6 (lower is better)
Translates to: SGRGLGWRLRGC*TAAARPTCTHP
Trigger: AGGGTGAGTGCAGGTCGGCCTGGCAGCGGCGGTGCAGCAGCCGCGGAGCCGCCAGCCTAACCCCCTTCCGCT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS GCA 72 bp GTTAGGCTGGCGGCTCCGCGGCTGCTGCACCGCCGCTaGCAGGCCGACCTGCACTCACCCTTCACGTTGCCG +
Preference number: 6 (lower is better)
Translates to: VRLAAPRLLHRR*QADLHSPFTLP
Trigger: CGGCAACGTGAAGGGTGAGTGCAGGTCGGCCTGGCAGCGGCGGTGCAGCAGCCGCGGAGCCGCCAGCCTAAC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS GCA 72 bp AAGAGCGGAAGGGGGTTAGGCTGGCGGCTCCGCGGCTaGTGCACCGCCGCTGCCAGGCCGACCTGCACTCAC +
Preference number: 6 (lower is better)
Translates to: KSGRGLGWRLRG*CTAAARPTCTH
Trigger: GTGAGTGCAGGTCGGCCTGGCAGCGGCGGTGCAGCAGCCGCGGAGCCGCCAGCCTAACCCCCTTCCGCTCTT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS CAA 72 bp CTGGAGATCGGGGCGTTCCGCGGGCCGCGCACCGGATaGCGAAGGTCAGAGAGGACGCAGCTGTGGGGCGCG +
Preference number: 6 (lower is better)
Translates to: LEIGAFRGPRTG*RRSERTQLWGA
Trigger: CGCGCCCCACAGCTGCGTCCTCTCTGACCTTCGCAATCCGGTGCGCGGCCCGCGGAACGCCCCGATCTCCAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CAA 90 bp CTGCTGCACCGCCGCTGCCAGGCCGACCTGCACTCACCCTTCACGTaGCCGCCCGTGACCAGGCACTTCATGCTGCCCCAGCGCTCCGCC +
Preference number: 6 (lower is better)
Translates to: LLHRRCQADLHSPFT*PPVTRHFMLPQRSA
Trigger: GGCGGAGCGCTGGGGCAGCATGAAGTGCCTGGTCACGGGCGGCAACGTGAAGGGTGAGTGCAGGTCGGCCTGGCAGCGGCGGTGCAGCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS GCA 72 bp TGGAGATCGGGGCGTTCCGCGGGCCGCGCACCGGATTaGGAAGGTCAGAGAGGACGCAGCTGTGGGGCGCGA +
Preference number: 6 (lower is better)
Translates to: WRSGRSAGRAPD*EGQRGRSCGAR
Trigger: TCGCGCCCCACAGCTGCGTCCTCTCTGACCTTCGCAATCCGGTGCGCGGCCCGCGGAACGCCCCGATCTCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CAA 90 bp GCCGAGGCCTCAGGAGCGTGTGCGCGCCGGGACGCCCCAGAGAATTaGGAAGCGCTGGTCCCGGAGGCAAGGCCGGCTTGGTCTCCTCTC +
Preference number: 6 (lower is better)
Translates to: AEASGACARRDAPEN*EALVPEARPAWSPL
Trigger: GAGAGGAGACCAAGCCGGCCTTGCCTCCGGGACCAGCGCTTCCAAATTCTCTGGGGCGTCCCGGCGCGCACACGCTCCTGAGGCCTCGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS TCA 72 bp GGACGGCCTTGCCGAGCACCTTCACGTTGCCGCCCGTaGCCAGGCACTTCATGCTGCCCCAGCGCTCCGCCA +
Preference number: 6 (lower is better)
Translates to: GRPCRAPSRCRP*PGTSCCPSAPP
Trigger: TGGCGGAGCGCTGGGGCAGCATGAAGTGCCTGGTCACGGGCGGCAACGTGAAGGTGCTCGGCAAGGCCGTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307980.7
ENST00000542139.1
ENST00000544620.5
CDS TCA 72 bp CACCGTCCGGAGGGAGAGCCTTCACGTTGCCGCCCGTaGCCAGGCACTTCATGCTGCCCCAGCGCTCCGCCA +
Preference number: 6 (lower is better)
Translates to: HRPEGEPSRCRP*PGTSCCPSAPP
Trigger: TGGCGGAGCGCTGGGGCAGCATGAAGTGCCTGGTCACGGGCGGCAACGTGAAGGCTCTCCCTCCGGACGGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538013.5
CDS TCA 72 bp GTGGACGGCCTTGCCGAGCAAGGCTCTGCCGTCACGTaGCGGCGCACGTTGTCCGGGGTGTCACGTGACCGG +
Preference number: 6 (lower is better)
Translates to: VDGLAEQGSAVT*RRTLSGVSRDR
Trigger: CCGGTCACGTGACACCCCGGACAACGTGCGCCGTCACGTGACGGCAGAGCCTTGCTCGGCAAGGCCGTCCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543808.5
CDS GCA 72 bp GCTGTGGGGCGCGAGGTCCCTGTGCAGTGGACCGAGTaGTGGACTCGGAGTCGGAGTGTGGGGGCGAGCTCT +
Preference number: 6 (lower is better)
Translates to: AVGREVPVQWTE*WTRSRSVGASS
Trigger: AGAGCTCGCCCCCACACTCCGACTCCGAGTCCAGCACTCGGTCCACTGCACAGGGACCTCGCGCCCCACAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CCA 72 bp GTGCGCGCCGGGACGCCCCAGAGAATTTGGAAGCGCTaGTCCCGGAGGCAAGGCCGGCTTGGTCTCCTCTCC +
Preference number: 6 (lower is better)
Translates to: VRAGTPQRIWKR*SRRQGRLGLLS
Trigger: GGAGAGGAGACCAAGCCGGCCTTGCCTCCGGGACCAGCGCTTCCAAATTCTCTGGGGCGTCCCGGCGCGCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS CCA 72 bp CAGGAGCGTGTGCGCGCCGGGACGCCCCAGAGAATTTaGAAGCGCTGGTCCCGGAGGCAAGGCCGGCTTGGT +
Preference number: 6 (lower is better)
Translates to: QERVRAGTPQRI*KRWSRRQGRLG
Trigger: ACCAAGCCGGCCTTGCCTCCGGGACCAGCGCTTCCAAATTCTCTGGGGCGTCCCGGCGCGCACACGCTCCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS CAA 72 bp CGCCGCTGCCAGGCCGACCTGCACTCACCCTTCACGTaGCCGCCCGTGACCAGGCACTTCATGCTGCCCCAG +
Preference number: 6 (lower is better)
Translates to: RRCQADLHSPFT*PPVTRHFMLPQ
Trigger: CTGGGGCAGCATGAAGTGCCTGGTCACGGGCGGCAACGTGAAGGGTGAGTGCAGGTCGGCCTGGCAGCGGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS CAA 72 bp TCAGGAGCGTGTGCGCGCCGGGACGCCCCAGAGAATTaGGAAGCGCTGGTCCCGGAGGCAAGGCCGGCTTGG +
Preference number: 6 (lower is better)
Translates to: SGACARRDAPEN*EALVPEARPAW
Trigger: CCAAGCCGGCCTTGCCTCCGGGACCAGCGCTTCCAAATTCTCTGGGGCGTCCCGGCGCGCACACGCTCCTGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS TCA 72 bp AGGCCGACCTGCACTCACCCTTCACGTTGCCGCCCGTaGCCAGGCACTTCATGCTGCCCCAGCGCTCCGCCA +
Preference number: 6 (lower is better)
Translates to: RPTCTHPSRCRP*PGTSCCPSAPP
Trigger: TGGCGGAGCGCTGGGGCAGCATGAAGTGCCTGGTCACGGGCGGCAACGTGAAGGGTGAGTGCAGGTCGGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS GCA 72 bp CGTCCTCCAAGGGTTCCAGGTAGAGCTCGTCCCCGATaGGGGACAGGGAGTGGACGGCCTTGCCGAGCACCT +
Preference number: 6 (lower is better)
Translates to: RPPRVPGRARPR*GTGSGRPCRAP
Trigger: AGGTGCTCGGCAAGGCCGTCCACTCCCTGTCCCGCATCGGGGACGAGCTCTACCTGGAACCCTTGGAGGACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000307980.7
ENST00000542139.1
ENST00000544620.5
CDS GCA 72 bp CGTCCTCCAAGGGTTCCAGGTAGAGCTCGTCCCCGATaGGGGACAGGGAGTGGACGGCCTTGCCGAGCACTG +
Preference number: 6 (lower is better)
Translates to: RPPRVPGRARPR*GTGSGRPCRAL
Trigger: CAGTGCTCGGCAAGGCCGTCCACTCCCTGTCCCGCATCGGGGACGAGCTCTACCTGGAACCCTTGGAGGACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541132.1
CDS GCA 72 bp CGTCCTCCAAGGGTTCCAGGTAGAGCTCGTCCCCGATaGGGGACAGGGAGTGGACGGCCTTGCCGAGCAAGG +
Preference number: 6 (lower is better)
Translates to: RPPRVPGRARPR*GTGSGRPCRAR
Trigger: CCTTGCTCGGCAAGGCCGTCCACTCCCTGTCCCGCATCGGGGACGAGCTCTACCTGGAACCCTTGGAGGACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000543808.5
CDS GCA 72 bp TCAGAGAGGACGCAGCTGTGGGGCGCGAGGTCCCTGTaGAGTGGACCGAGTGCTGGACTCGGAGTCGGAGTG +
Preference number: 6 (lower is better)
Translates to: SERTQLWGARSL*SGPSAGLGVGV
Trigger: CACTCCGACTCCGAGTCCAGCACTCGGTCCACTGCACAGGGACCTCGCGCCCCACAGCTGCGTCCTCTCTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS GCA 72 bp CCCCTTTCCTCAGAACGCCGAGGCCTCAGGAGCGTGTaGGCGCCGGGACGCCCCAGAGAATTTGGAAGCGCT +
Preference number: 6 (lower is better)
Translates to: PLSSERRGLRSV*APGRPREFGSA
Trigger: AGCGCTTCCAAATTCTCTGGGGCGTCCCGGCGCGCACACGCTCCTGAGGCCTCGGCGTTCTGAGGAAAGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS GCA 72 bp GCGCCTCCGTCACGTGAGAAAAACGCTCACAGGCTCTaGCGTCACGTGACGGCGCACGTTGTCCGGGGTGTC +
Preference number: 6 (lower is better)
Translates to: APPSREKNAHRL*RHVTAHVVRGV
Trigger: GACACCCCGGACAACGTGCGCCGTCACGTGACGGCAGAGCCTGTGAGCGTTTTTCTCACGTGACGGAGGCGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CCA 72 bp GCTGGACTCGGAGTCGGAGTGTGGGGGCGAGCTCTCTaGGGTCACCCACTTAGTAGAGTTCCCGGGCGTCTG +
Preference number: 6 (lower is better)
Translates to: AGLGVGVWGRAL*GHPLSRVPGRL
Trigger: CAGACGCCCGGGAACTCTACTAAGTGGGTGACCCCAGAGAGCTCGCCCCCACACTCCGACTCCGAGTCCAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS TCA 72 bp CACGTGAGAAAAACGCTCACAGGCTCTGCCGTCACGTaGCGGCGCACGTTGTCCGGGGTGTCACGTGACCGG +
Preference number: 6 (lower is better)
Translates to: HVRKTLTGSAVT*RRTLSGVSRDR
Trigger: CCGGTCACGTGACACCCCGGACAACGTGCGCCGTCACGTGACGGCAGAGCCTGTGAGCGTTTTTCTCACGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS GCA 72 bp AGTAGAGTTCCCGGGCGTCTGCCGGGGGATACAGGGTaGAAGCAAGACCATCGCACCCACTCTGGGCCTGAG +
Preference number: 6 (lower is better)
Translates to: SRVPGRLPGDTG*KQDHRTHSGPE
Trigger: CTCAGGCCCAGAGTGGGTGCGATGGTCTTGCTTGCACCCTGTATCCCCCGGCAGACGCCCGGGAACTCTACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CCA 72 bp AATTTGGAAGCGCTGGTCCCGGAGGCAAGGCCGGCTTaGTCTCCTCTCCTCAATCCCCCGACGCCATCCCCT +
Preference number: 6 (lower is better)
Translates to: NLEALVPEARPA*SPLLNPPTPSP
Trigger: AGGGGATGGCGTCGGGGGATTGAGGAGAGGAGACCAAGCCGGCCTTGCCTCCGGGACCAGCGCTTCCAAATT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS TCA 72 bp CTCCCCATTGGTCCACGTGCAGGCGCCTCCGTCACGTaGGAAAAACGCTCACAGGCTCTGCCGTCACGTGAC +
Preference number: 6 (lower is better)
Translates to: LPIGPRAGASVT*EKRSQALPSRD
Trigger: GTCACGTGACGGCAGAGCCTGTGAGCGTTTTTCTCACGTGACGGAGGCGCCTGCACGTGGACCAATGGGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS GCA 72 bp AGCATGTGGGGGCACGAGGCTGGGTCGAAGACGGCCTaGAGGGACTCACAGTCCGAACTTGCAATGCAGCTG +
Preference number: 6 (lower is better)
Translates to: SMWGHEAGSKTA*RDSQSELAMQL
Trigger: CAGCTGCATTGCAAGTTCGGACTGTGAGTCCCTGCAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS GCA 72 bp GCAGCCCTCAGTTCCTGCAAACCAGTGCTTTCTGGCTaGCCCAGGTGGATGTGTGCTGGGGATGGCGTTGTC +
Preference number: 6 (lower is better)
Translates to: AALSSCKPVLSG*PRWMCAGDGVV
Trigger: GACAACGCCATCCCCAGCACACATCCACCTGGGGCAGCCAGAAAGCACTGGTTTGCAGGAACTGAGGGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS GCA 72 bp TCTGGGGTCACCCACTTAGTAGAGTTCCCGGGCGTCTaGCGGGGGATACAGGGTGCAAGCAAGACCATCGCA +
Preference number: 6 (lower is better)
Translates to: SGVTHLVEFPGV*RGIQGASKTIA
Trigger: TGCGATGGTCTTGCTTGCACCCTGTATCCCCCGGCAGACGCCCGGGAACTCTACTAAGTGGGTGACCCCAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CCA 72 bp AGCTGCAGCCCTCAGTTCCTGCAAACCAGTGCTTTCTaGCTGCCCCAGGTGGATGTGTGCTGGGGATGGCGT +
Preference number: 6 (lower is better)
Translates to: SCSPQFLQTSAF*LPQVDVCWGWR
Trigger: ACGCCATCCCCAGCACACATCCACCTGGGGCAGCCAGAAAGCACTGGTTTGCAGGAACTGAGGGCTGCAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CAA 72 bp GCCACCGCGCCCGGCCAAAAGACGTGCTTACCTTTCTaGACGAACTTGAGCGTCACCACCCTCTCAGGTCCC +
Preference number: 6 (lower is better)
Translates to: ATAPGQKTCLPF*TNLSVTTLSGP
Trigger: GGGACCTGAGAGGGTGGTGACGCTCAAGTTCGTCAAGAAAGGTAAGCACGTCTTTTGGCCGGGCGCGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000530934.5
CDS GCA 72 bp GATCTTACAGCGCAGCAGGTCCTGACCAGGGGTGGCTaGCTGGTATTGCTGGAAGAAGAGCGGGGCAAAGAG +
Preference number: 6 (lower is better)
Translates to: DLTAQQVLTRGG*LVLLEEERGKE
Trigger: CTCTTTGCCCCGCTCTTCTTCCAGCAATACCAGGCAGCCACCCCTGGTCAGGACCTGCTGCGCTGTAAGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000307980.7
ENST00000538013.5
ENST00000541132.1
ENST00000542139.1
ENST00000543808.5
ENST00000544620.5
CDS GCA 72 bp CCCCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGATGCAGCATTTTTCCA +
Preference number: 6 (lower is better)
Translates to: PRTCNAAGPPGG*SGHSGRCSIFP
Trigger: TGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000307980.7
ENST00000529100.5
ENST00000530934.5
ENST00000541132.1
ENST00000543808.5
ENST00000544620.5
CDS GCA 72 bp GTTTCAGAGCTGCAGCCCTCAGTTCCTGCAAACCAGTaGTTTCTGGCTGCCCCAGGTGGATGTGTGCTGGGG +
Preference number: 6 (lower is better)
Translates to: VSELQPSVPANQ*FLAAPGGCVLG
Trigger: CCCCAGCACACATCCACCTGGGGCAGCCAGAAAGCACTGGTTTGCAGGAACTGAGGGCTGCAGCTCTGAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS CCA 72 bp TCAGGATCTTACAGCGCAGCAGGTCCTGACCAGGGGTaGCTGCCTGGTATTGCTGGAAGAAGAGCGGGGCAA +
Preference number: 6 (lower is better)
Translates to: SGSYSAAGPDQG*LPGIAGRRAGQ
Trigger: TTGCCCCGCTCTTCTTCCAGCAATACCAGGCAGCCACCCCTGGTCAGGACCTGCTGCGCTGTAAGATCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000307980.7
ENST00000538013.5
ENST00000541132.1
ENST00000542139.1
ENST00000543808.5
ENST00000544620.5
CDS CAA 90 bp ATGACCTTGAGGACCCTTGAGTTGCGTCTCCAGGAGAAGGAGCATTaGTGGCCCCCAGATGTCCTCCAGCATCCCATATCTGTCGGCCGC +
Preference number: 6 (lower is better)
Translates to: MTLRTLELRLQEKEH*WPPDVLQHPISVGR
Trigger: GCGGCCGACAGATATGGGATGCTGGAGGACATCTGGGGGCCACAAATGCTCCTTCTCCTGGAGACGCAACTCAAGGGTCCTCAAGGTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000622583.4
CDS TCA 72 bp AGTTTCTCCAGGCAGAAAGGGGTAGAACGGTGCCCCTaGGCAGCCGCCTGGAATAAGGGTAGATGCCGAAGC +
Preference number: 6 (lower is better)
Translates to: SFSRQKGVERCP*AAAWNKGRCRS
Trigger: GCTTCGGCATCTACCCTTATTCCAGGCGGCTGCTCAGGGGCACCGTTCTACCCCTTTCTGCCTGGAGAAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000621995.1
ENST00000622583.4
CDS GCA 72 bp GTCCGAACTTGCAATGCAGCTGGACCACCAGGCGGCTaGTCCGGCCATTCAGGGAGATGCAGCATTTTTCCA +
Preference number: 6 (lower is better)
Translates to: VRTCNAAGPPGG*SGHSGRCSIFP
Trigger: TGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542139.1
CDS GCA 72 bp GCAGCTTGCTTGCAGCAGCCGGGAGTGGGAGGTGGCTaGTCCTTCCGGCTTCGAGGATCCTTTAAGGAAAAA +
Preference number: 6 (lower is better)
Translates to: AACLQQPGVGGG*SFRLRGSFKEK
Trigger: TTTTTCCTTAAAGGATCCTCGAAGCCGGAAGGAGCAGCCACCTCCCACTCCCGGCTGCTGCAAGCAAGCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000621995.1
CDS GCA 72 bp GGACCACCAGGCGGCTGCTCCGGCCATTCAGGGAGATaGAGCATTTTTCCACCGTCTTCATCAGGATCTTAC +
Preference number: 6 (lower is better)
Translates to: GPPGGCSGHSGR*SIFPPSSSGSY
Trigger: GTAAGATCCTGATGAAGACGGTGGAAAAATGCTGCATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544620.5
CDS CAA 72 bp CCCGGCCAAAAGACGTGCTTACCTTTCTTGACGAACTaGAGCGTCACCACCCTCTCAGGTCCCCGCTGTGAT +
Preference number: 6 (lower is better)
Translates to: PGQKTCLPFLTN*SVTTLSGPRCD
Trigger: ATCACAGCGGGGACCTGAGAGGGTGGTGACGCTCAAGTTCGTCAAGAAAGGTAAGCACGTCTTTTGGCCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000530934.5
CDS CCA 72 bp ACTCTGGGAAAAGGGCTCCCACGTCACCTCGGGCACTaGCATCCTTCTAGGCCTCATTCATGCTCTTCCTTA +
Preference number: 6 (lower is better)
Translates to: TLGKGLPRHLGH*HPSRPHSCSSL
Trigger: TAAGGAAGAGCATGAATGAGGCCTAGAAGGATGCCAGTGCCCGAGGTGACGTGGGAGCCCTTTTCCCAGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000529100.5
ENST00000530934.5
CDS CAA 72 bp GTGGCCAAGACAAAGTGGCCGTCCAGCAAAGAGTCCTaGATGGTGAAGATGGCGGGCCTGGAGCATCAAAAT +
Preference number: 6 (lower is better)
Translates to: VAKTKWPSSKES*MVKMAGLEHQN
Trigger: ATTTTGATGCTCCAGGCCCGCCATCTTCACCATCAAGGACTCTTTGCTGGACGGCCACTTTGTCTTGGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000529100.5
CDS TCA 72 bp GCAGCATTTTTCCACCGTCTTCTCCAGCATCGCCAGTaGGCGGAAGACAGACAGGAAAGACTGCATGGGATA +
Preference number: 6 (lower is better)
Translates to: AAFFHRLLQHRQ*AEDRQERLHGI
Trigger: TATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGAAAAATGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000529100.5
ENST00000530934.5
CDS CCA 72 bp TCGCCAGTGAGCGGAAGACAGACAGGAAAGACTGCATaGGATAAGACACCTCAGCCTAGCATCACATCTCTG +
Preference number: 6 (lower is better)
Translates to: SPVSGRQTGKTA*DKTPQPSITSL
Trigger: CAGAGATGTGATGCTAGGCTGAGGTGTCTTATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000529100.5
ENST00000530934.5