Pregenerated sensors for RAD17 (Homo sapiens)
Ensembl gene IDs: ENSG00000152942Ensembl transcript IDs: ENST00000305138.8, ENST00000354868.10, ENST00000361732.6, ENST00000504177.5, ENST00000507927.5, ENST00000508320.1, ENST00000509734.5, ENST00000511349.1, ENST00000514066.6, ENST00000521422.5, ENST00000610584.4, ENST00000610770.4, ENST00000611001.4, ENST00000611548.4, ENST00000611701.4, ENST00000612044.4, ENST00000616488.2, ENST00000616683.4, ENST00000617147.4, ENST00000617338.4, ENST00000620889.4, ENST00000621067.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | ATGCTCCTTTTTCAGCTTTGGGTTGCTTTCTTCCCTTaGTTTCTCATCTCAATACAGTGGTCTTTACTCTTT | + |
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Preference number: 3 (lower is better) Translates to: MLLFQLWVAFFP*FLISIQWSLLF Trigger: AAAGAGTAAAGACCACTGTATTGAGATGAGAAATCAAGGGAAGAAAGCAACCCAAAGCTGAAAAAGGAGCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000508320.1 ENST00000617338.4 |
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| CDS GCA 90 bp | CGCAGAGTGCTCTGGGCATCGGGCGCCCAGGTGGGGGCCCCTCACTaGCCTCTTCAGAGGCCGGCCGAGGGCCACGAGGCGGTTGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: RRVLWASGAQVGAPH*PLQRPAEGHEAVVS Trigger: GCTGACAACCGCCTCGTGGCCCTCGGCCGGCCTCTGAAGAGGGCAGTGAGGGGCCCCCACCTGGGCGCCCGATGCCCAGAGCACTCTGCG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000361732.6 ENST00000507927.5 ENST00000514066.6 ENST00000611548.4 ENST00000617147.4 ENST00000620889.4 |
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| CDS CCA 90 bp | GAGCGGAGGCGACCAGGGACTACCCTAGGTGAAAGGGCAGCCACCTaGCCCTACCCGGGCTCAACGCCGAGCCTCTCGGAGGTACGGCCT | + |
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Preference number: 5 (lower is better) Translates to: ERRRPGTTLGERAAT*PYPGSTPSLSEVRP Trigger: AGGCCGTACCTCCGAGAGGCTCGGCGTTGAGCCCGGGTAGGGCCAGGTGGCTGCCCTTTCACCTAGGGTAGTCCCTGGTCGCCTCCGCTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000509734.5 ENST00000610584.4 ENST00000610770.4 |
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| CDS GCA 90 bp | GGGTGCCGGGTTGAGCTCGCAAATCCCCGCTGCAGGACAGGGCTCTaGACCCTCAATCTTCTCATCCCCAGATGGGATGGGCGGGTCGGG | + |
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Preference number: 5 (lower is better) Translates to: GCRVELANPRCRTGL*TLNLLIPRWDGRVG Trigger: CCCGACCCGCCCATCCCATCTGGGGATGAGAAGATTGAGGGTGCAGAGCCCTGTCCTGCAGCGGGGATTTGCGAGCTCAACCCGGCACCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000509734.5 ENST00000511349.1 ENST00000610584.4 ENST00000621067.1 |
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| CDS TCA 90 bp | CAAATATTCGTCCAACGTAATCCTGTAATCAGTGGGGTGCCGGGTTaGGCTCGCAAATCCCCGCTGCAGGACAGGGCTCTGCACCCTCAA | + |
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Preference number: 5 (lower is better) Translates to: QIFVQRNPVISGVPG*ARKSPLQDRALHPQ Trigger: TTGAGGGTGCAGAGCCCTGTCCTGCAGCGGGGATTTGCGAGCTCAACCCGGCACCCCACTGATTACAGGATTACGTTGGACGAATATTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000509734.5 ENST00000511349.1 ENST00000610584.4 ENST00000616488.2 ENST00000616683.4 ENST00000621067.1 |
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| CDS TCA 90 bp | CTGTTAAAGATGCTCCTTTTTCAGCTTTGGGTTGCTTTCTTCCCTTaGTTTCTCATCTCAATACAGTGGTCTTTACTCTTTTATTTACTA | + |
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Preference number: 5 (lower is better) Translates to: LLKMLLFQLWVAFFP*FLISIQWSLLFYLL Trigger: TAGTAAATAAAAGAGTAAAGACCACTGTATTGAGATGAGAAATCAAGGGAAGAAAGCAACCCAAAGCTGAAAAAGGAGCATCTTTAACAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000508320.1 ENST00000617338.4 |
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| CDS GCA 72 bp | CTCTGGGCATCGGGCGCCCAGGTGGGGGCCCCTCACTaGCCTCTTCAGAGGCCGGCCGAGGGCCACGAGGCG | + |
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Preference number: 6 (lower is better) Translates to: LWASGAQVGAPH*PLQRPAEGHEA Trigger: CGCCTCGTGGCCCTCGGCCGGCCTCTGAAGAGGGCAGTGAGGGGCCCCCACCTGGGCGCCCGATGCCCAGAG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000361732.6 ENST00000507927.5 ENST00000514066.6 ENST00000611548.4 ENST00000617147.4 ENST00000620889.4 |
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| CDS CCA 72 bp | CGACCAGGGACTACCCTAGGTGAAAGGGCAGCCACCTaGCCCTACCCGGGCTCAACGCCGAGCCTCTCGGAG | + |
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Preference number: 6 (lower is better) Translates to: RPGTTLGERAAT*PYPGSTPSLSE Trigger: CTCCGAGAGGCTCGGCGTTGAGCCCGGGTAGGGCCAGGTGGCTGCCCTTTCACCTAGGGTAGTCCCTGGTCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 10 transcripts: ENST00000354868.10 ENST00000504177.5 ENST00000509734.5 ENST00000511349.1 ENST00000521422.5 ENST00000610584.4 ENST00000610770.4 ENST00000611001.4 ENST00000611701.4 ENST00000621067.1 |
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| CDS TCA 72 bp | GTCCAACGTAATCCTGTAATCAGTGGGGTGCCGGGTTaGGCTCGCAAATCCCCGCTGCAGGACAGGGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: VQRNPVISGVPG*ARKSPLQDRAL Trigger: CAGAGCCCTGTCCTGCAGCGGGGATTTGCGAGCTCAACCCGGCACCCCACTGATTACAGGATTACGTTGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000509734.5 ENST00000511349.1 ENST00000610584.4 ENST00000616488.2 ENST00000616683.4 ENST00000621067.1 |
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| CDS CCA 72 bp | TTTAAGGTCTACAAACTTATACATTGGAAAGTATACTaGACTACTTTACAGTTTGGAGGCACACATAGCCTA | + |
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Preference number: 6 (lower is better) Translates to: FKVYKLIHWKVY*TTLQFGGTHSL Trigger: TAGGCTATGTGTGCCTCCAAACTGTAAAGTAGTCCAGTATACTTTCCAATGTATAAGTTTGTAGACCTTAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000305138.8 ENST00000612044.4 |
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