Pregenerated sensors for RABGGTB (Homo sapiens)
Ensembl gene IDs: ENSG00000137955Ensembl transcript IDs: ENST00000319942.8, ENST00000459697.1, ENST00000461653.5, ENST00000462042.5, ENST00000470201.5, ENST00000471759.5, ENST00000473406.5, ENST00000491266.5, ENST00000496055.5, ENST00000497648.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCTCATCTACTTTGTCTGGCAAGCCCTCTCAGTATAGGTAAAAACTaGGATTCTAATAAGCCCACAGCCTCAGACGTCCAAAGCACACTT | + |
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Preference number: 5 (lower is better) Translates to: PHLLCLASPLSIGKN*DSNKPTASDVQSTL Trigger: AAGTGTGCTTTGGACGTCTGAGGCTGTGGGCTTATTAGAATCTCAGTTTTTACCTATACTGAGAGGGCTTGCCAGACAAAGTAGATGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000496055.5 ENST00000497648.1 |
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| CDS TCA 90 bp | GAGTGCCCTTTAATCCGAGTCTCTGTATTTGCAGAAGTCCCCATGTaGTGCGGCTCTAGTTCTTTTCGTATCTATATCTTCCTCATTGAG | + |
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Preference number: 5 (lower is better) Translates to: ECPLIRVSVFAEVPM*CGSSSFRIYIFLIE Trigger: CTCAATGAGGAAGATATAGATACGAAAAGAACTAGAGCCGCATCACATGGGGACTTCTGCAAATACAGAGACTCGGATTAAAGGGCACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000473406.5 |
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| CDS TCA 90 bp | TCTCCACCTTTAATCCGAGTCTCTGTATTTGCAGAAGTCCCCATGTaGTGCGGCTCTAGTTCTTTTCGTATCTATATCTTCCTCATTGAG | + |
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Preference number: 5 (lower is better) Translates to: SPPLIRVSVFAEVPM*CGSSSFRIYIFLIE Trigger: CTCAATGAGGAAGATATAGATACGAAAAGAACTAGAGCCGCATCACATGGGGACTTCTGCAAATACAGAGACTCGGATTAAAGGTGGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000462042.5 ENST00000470201.5 ENST00000471759.5 ENST00000491266.5 |
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| CDS TCA 90 bp | AAAGGCAGAAACGAGTCCAGCCCCATCCATATGGCCTTAACTCCATaGTTGCTAATAGAGTATTTTCAAGGTTATGGGAACCTAACACTT | + |
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Preference number: 5 (lower is better) Translates to: KGRNESSPIHMALTP*LLIEYFQGYGNLTL Trigger: AAGTGTTAGGTTCCCATAACCTTGAAAATACTCTATTAGCAATCATGGAGTTAAGGCCATATGGATGGGGCTGGACTCGTTTCTGCCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000496055.5 ENST00000497648.1 |
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| CDS GCA 90 bp | GCACACTTAACTGAAGTTCAAAGGCACAGCACATCCTCAGTTCTCTaGATGGAGTTGGATGCCATTTTAAGACATAAATACTGTCTCACT | + |
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Preference number: 5 (lower is better) Translates to: AHLTEVQRHSTSSVL*MELDAILRHKYCLT Trigger: AGTGAGACAGTATTTATGTCTTAAAATGGCATCCAACTCCATGCAGAGAACTGAGGATGTGCTGTGCCTTTGAACTTCAGTTAAGTGTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000496055.5 ENST00000497648.1 |
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| CDS TCA 90 bp | TCTCCCATGAGCCAGAGACAGAAAAACATCTACCTTTTTCATCAGTaGAGTTCAGGGAGAGTATTTCTTTCCGAGTACCTATACCATATT | + |
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Preference number: 5 (lower is better) Translates to: SPMSQRQKNIYLFHQ*SSGRVFLSEYLYHI Trigger: AATATGGTATAGGTACTCGGAAAGAAATACTCTCCCTGAACTTCACTGATGAAAAAGGTAGATGTTTTTCTGTCTCTGGCTCATGGGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000496055.5 |
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| CDS GCA 90 bp | GACAGTTCCTCAGGCTTTTTATTTCACTCTATTGTAGACAGCTACTaGGGGTGTTTCTCTACCCGTTGTTATTCAGAAATACTAAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: DSSSGFLFHSIVDSY*GCFSTRCYSEILRF Trigger: AAACCTTAGTATTTCTGAATAACAACGGGTAGAGAAACACCCGCAGTAGCTGTCTACAATAGAGTGAAATAAAAAGCCTGAGGAACTGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000459697.1 |
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| CDS CCA 72 bp | TGCAGTGAACTGAGGTTGTGTCACTGCACTCCATCCTaGGCGACCGGAGACCGACTCAAAAACAAAACCAAA | + |
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Preference number: 6 (lower is better) Translates to: CSELRLCHCTPS*ATGDRLKNKTK Trigger: TTTGGTTTTGTTTTTGAGTCGGTCTCCGGTCGCCCAGGATGGAGTGCAGTGACACAACCTCAGTTCACTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000471759.5 |
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| CDS TCA 72 bp | CTTTGTCTGGCAAGCCCTCTCAGTATAGGTAAAAACTaGGATTCTAATAAGCCCACAGCCTCAGACGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: LCLASPLSIGKN*DSNKPTASDVQ Trigger: TTGGACGTCTGAGGCTGTGGGCTTATTAGAATCTCAGTTTTTACCTATACTGAGAGGGCTTGCCAGACAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000496055.5 ENST00000497648.1 |
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| CDS TCA 72 bp | AACGAGTCCAGCCCCATCCATATGGCCTTAACTCCATaGTTGCTAATAGAGTATTTTCAAGGTTATGGGAAC | + |
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Preference number: 6 (lower is better) Translates to: NESSPIHMALTP*LLIEYFQGYGN Trigger: GTTCCCATAACCTTGAAAATACTCTATTAGCAATCATGGAGTTAAGGCCATATGGATGGGGCTGGACTCGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000496055.5 ENST00000497648.1 |
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| CDS CAA 72 bp | GCGGCTCTAGTTCTTTTCGTATCTATATCTTCCTCATaGAGAGTACACTGCAGTCACATGTCTAACAGGGAA | + |
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Preference number: 6 (lower is better) Translates to: AALVLFVSISSS*RVHCSHMSNRE Trigger: TTCCCTGTTAGACATGTGACTGCAGTGTACTCTCAATGAGGAAGATATAGATACGAAAAGAACTAGAGCCGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473406.5 |
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| CDS TCA 72 bp | TTAATCCGAGTCTCTGTATTTGCAGAAGTCCCCATGTaGTGCGGCTCTAGTTCTTTTCGTATCTATATCTTC | + |
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Preference number: 6 (lower is better) Translates to: LIRVSVFAEVPM*CGSSSFRIYIF Trigger: GAAGATATAGATACGAAAAGAACTAGAGCCGCATCACATGGGGACTTCTGCAAATACAGAGACTCGGATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000462042.5 ENST00000470201.5 ENST00000471759.5 ENST00000473406.5 ENST00000491266.5 |
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| CDS GCA 72 bp | ACTGAAGTTCAAAGGCACAGCACATCCTCAGTTCTCTaGATGGAGTTGGATGCCATTTTAAGACATAAATAC | + |
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Preference number: 6 (lower is better) Translates to: TEVQRHSTSSVL*MELDAILRHKY Trigger: GTATTTATGTCTTAAAATGGCATCCAACTCCATGCAGAGAACTGAGGATGTGCTGTGCCTTTGAACTTCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000496055.5 ENST00000497648.1 |
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| CDS GCA 72 bp | TCAGGCTTTTTATTTCACTCTATTGTAGACAGCTACTaGGGGTGTTTCTCTACCCGTTGTTATTCAGAAATA | + |
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Preference number: 6 (lower is better) Translates to: SGFLFHSIVDSY*GCFSTRCYSEI Trigger: TATTTCTGAATAACAACGGGTAGAGAAACACCCGCAGTAGCTGTCTACAATAGAGTGAAATAAAAAGCCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000459697.1 |
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| CDS TCA 72 bp | AAAATGAAATTACGCAGTTTCTCTCTATCAATCCAATaGAGTCTTCCAATTATCTTTAGGGAAGCCAGGACC | + |
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Preference number: 6 (lower is better) Translates to: KMKLRSFSLSIQ*SLPIIFREART Trigger: GGTCCTGGCTTCCCTAAAGATAATTGGAAGACTTCATTGGATTGATAGAGAGAAACTGCGTAATTTCATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000319942.8 ENST00000459697.1 ENST00000471759.5 ENST00000496055.5 |
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| CDS CAA 72 bp | GAAGTAAGAGAACATACTATCAAGATCGTTGCAATTTaGATTAGTATTTACCTGGACAGCACTAAGAGTGTA | + |
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Preference number: 6 (lower is better) Translates to: EVREHTIKIVAI*ISIYLDSTKSV Trigger: TACACTCTTAGTGCTGTCCAGGTAAATACTAATCAAAATTGCAACGATCTTGATAGTATGTTCTCTTACTTC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000461653.5 ENST00000496055.5 |
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