RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RABGEF1 (Homo sapiens)

Ensembl gene IDs: ENSG00000154710

Ensembl transcript IDs: ENST00000284957.9, ENST00000439720.3, ENST00000442563.5, ENST00000450873.6, ENST00000484547.7, ENST00000607882.5

Found 227 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTaGATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATCAGAGG +
Preference number: 1 (lower is better)
Translates to: VCKVKCILWRLQGAP*ISQLRDPVTSHHQR
Trigger: CCTCTGATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR CCA 90 bp CGCCTAAGCAAGCATCAGGAGACCAACTCTCAGCTTCTTGCTTCCTaGGAGAGGTCTGGCCAGACATGTAGCGATCAAAATCCTCCTGAC +
Preference number: 1 (lower is better)
Translates to: RLSKHQETNSQLLAS*ERSGQTCSDQNPPD
Trigger: GTCAGGAGGATTTTGATCGCTACATGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGTTGGTCTCCTGATGCTTGCTTAGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR CCA 90 bp GTTCAGAAAACATGTCTAGACGTTTGCAAAGTCAAATGTATATTATaGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCC +
Preference number: 1 (lower is better)
Translates to: VQKTCLDVCKVKCIL*RLQGAPCISQLRDP
Trigger: GGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGACATGTTTTCTGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR CCA 90 bp TTCTCACTGGCATTTGATAGTAACTTATCACCTTCTGTGCGAGCTTaGGAACCAGCTGACTCAGTGAACTGCTTCCTGTCTTCAGTGCGT +
Preference number: 1 (lower is better)
Translates to: FSLAFDSNLSPSVRA*EPADSVNCFLSSVR
Trigger: ACGCACTGAAGACAGGAAGCAGTTCACTGAGTCAGCTGGTTCCCAAGCTCGCACAGAAGGTGATAAGTTACTATCAAATGCCAGTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284957.9
3UTR TCA 90 bp GTTCATTCAACTGAGACAAGAGATCCAAGTTCTTATACATTTGCTTaGCGCCTAAGCAAGCATCAGGAGACCAACTCTCAGCTTCTTGCT +
Preference number: 1 (lower is better)
Translates to: VHSTETRDPSSYTFA*RLSKHQETNSQLLA
Trigger: AGCAAGAAGCTGAGAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTTGGATCTCTTGTCTCAGTTGAATGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR TCA 90 bp GAAGAAGAATCATCAATGGTATATTTAGGTTATAGAAGGTTCCACTaGGATAAGAAAAGGTTCTACAATGCAGGTAGCTGTCAAGCCTCC +
Preference number: 1 (lower is better)
Translates to: EEESSMVYLGYRRFH*DKKRFYNAGSCQAS
Trigger: GGAGGCTTGACAGCTACCTGCATTGTAGAACCTTTTCTTATCTCAGTGGAACCTTCTATAACCTAAATATACCATTGATGATTCTTCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR TCA 90 bp AGTTTCTTGGCTTCATTCATGATCCTTTCTTGTCGTTCATTCAACTaGGACAAGAGATCCAAGTTCTTATACATTTGCTTGACGCCTAAG +
Preference number: 1 (lower is better)
Translates to: SFLASFMILSCRSFN*DKRSKFLYICLTPK
Trigger: CTTAGGCGTCAAGCAAATGTATAAGAACTTGGATCTCTTGTCTCAGTTGAATGAACGACAAGAAAGGATCATGAATGAAGCCAAGAAACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR TCA 90 bp AGTTTATCATTTTCAACGTTTTCAGAGTCAATAGCTGCTAACGGTTaGTTCGGAGGCTTAATTTCCAGTGGGTATTTCTCAACGATGTCT +
Preference number: 1 (lower is better)
Translates to: SLSFSTFSESIAANG*FGGLISSGYFSTMS
Trigger: AGACATCGTTGAGAAATACCCACTGGAAATTAAGCCTCCGAATCAACCGTTAGCAGCTATTGACTCTGAAAACGTTGAAAATGATAAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR GCA 90 bp CTTAATTTCCAGTGGGTATTTCTCAACGATGTCTTGAACTTCTCTTaGAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTCTT +
Preference number: 1 (lower is better)
Translates to: LNFQWVFLNDVLNFS*NSICPIYEVFFQFL
Trigger: AAGAAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAAGTTCAAGACATCGTTGAGAAATACCCACTGGAAATTAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR-3UTR GCA 90 bp CTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATCCATTCCAGGCCCAGTaGCTGCTCCTTCTCACTGAA +
Preference number: 2 (lower is better)
Translates to: LQGAPCISQLRDPVTSHHPFQAQ*LLLLTE
Trigger: TTCAGTGAGAAGGAGCAGGCACTGGGCCTGGAATGG...ATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR TCA 90 bp ATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACTTACCAAAACCACAGTaGATGCCAGAGGAAGCACAT +
Preference number: 2 (lower is better)
Translates to: IMEAARRPLHLTAEGPRHLPKPQ*MPEEAH
Trigger: ATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAA...GTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR GCA 90 bp CTCACAGCTGAGGGACCCCGTCACCTCTCACCATCAGAGGCCCATTCATTCCCGCAAAACCACAGTGAATaGCAGAGGAAGCACATAGGA +
Preference number: 2 (lower is better)
Translates to: LTAEGPRHLSPSEAHSFPQNHSE*QRKHIG
Trigger: TCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTG...CGGGAATGAATGGGCCTCTGATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR CAA 90 bp CGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTaGCATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATCAGAG +
Preference number: 2 (lower is better)
Translates to: RLQSQMYIMEAARRP*HLTAEGPRHLSPSE
Trigger: CTCTGATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR TCA 90 bp ATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCACACAAGCCTTAAATaGATCTGTATCAGTAACTCA +
Preference number: 2 (lower is better)
Translates to: IMEAARRPLHLTAEGPRHHTSLK*ICISNS
Trigger: TGAGTTACTGATACAGATTCATTTAAGGCTTGTGTG...GTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR GCA 90 bp ATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACACATATAAAATGCCATaGACAGCAGACACCATTCTT +
Preference number: 2 (lower is better)
Translates to: IMEAARRPLHLTAEGPRHTYKMP*TADTIL
Trigger: AAGAATGGTGTCTGCTGTGCATGGCATTTTATATGT...GTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR TCA 90 bp CCTTCTGTGCGAGCTTGGGAACCAGCTGACTCAGTGAACTGCTTCCTGTCTTCATTACCAAAACCACAGTaGATGCCAGAGGAAGCACAT +
Preference number: 2 (lower is better)
Translates to: PSVRAWEPADSVNCFLSSLPKPQ*MPEEAH
Trigger: ATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAA...TGAAGACAGGAAGCAGTTCACTGAGTCAGCTGGTTCCCAAGCTCGCACAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284957.9
3UTR-3UTR GCA 90 bp CCTTCTGTGCGAGCTTGGGAACCAGCTGACTCAGTGAACTGCTTCCTGTCTTCACAAAACCACAGTGAATaGCAGAGGAAGCACATAGGA +
Preference number: 2 (lower is better)
Translates to: PSVRAWEPADSVNCFLSSQNHSE*QRKHIG
Trigger: TCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTG...TGAAGACAGGAAGCAGTTCACTGAGTCAGCTGGTTCCCAAGCTCGCACAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284957.9
3UTR-3UTR TCA 90 bp TGGGAGAGGTCTGGCCAGACATGTAGCGATCAAAATCCTCCTGACTTAGATTCACGTCTAGCTTCTCAATaGAAGCCACAGCACAGCACA +
Preference number: 2 (lower is better)
Translates to: WERSGQTCSDQNPPDLDSRLASQ*KPQHST
Trigger: TGTGCTGTGCTGTGGCTTTCATTGAGAAGCTAGACG...TGAATCTAAGTCAGGAGGATTTTGATCGCTACATGTCTGGCCAGACCTCTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR-3UTR CCA 90 bp AAAGTTACTGCTCTGCAATTTTGGGCTCCATCCTTAGGAAGATACTGGAAAAGCAACGGAGGGGTGATATaGCCCCAGGAGACATCTGAC +
Preference number: 2 (lower is better)
Translates to: KVTALQFWAPSLGRYWKSNGGVI*PQETSD
Trigger: GTCAGATGTCTCCTGGGGCCATATCACCCCTCCGTT...GCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAATTGCAGAGCAGTAACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000284957.9
3UTR-3UTR TCA 90 bp TCCAAGTTCTTATACATTTGCTTGACGCCTAAGCAAGCATCAGGAGACCAACTCCGTCTAGCTTCTCAATaGAAGCCACAGCACAGCACA +
Preference number: 2 (lower is better)
Translates to: SKFLYICLTPKQASGDQLRLASQ*KPQHST
Trigger: TGTGCTGTGCTGTGGCTTTCATTGAGAAGCTAGACG...GAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR-3UTR TCA 90 bp TTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTCTTGGCCCCAGCGCAGGGCTCTaGTTCTCTTTTGAATGGCAA +
Preference number: 2 (lower is better)
Translates to: FSCNSICPIYEVFFQFLGPSAGL*FSFEWQ
Trigger: TTGCCATTCAAAAGAGAATCAGAGCCCTGCGCTGGG...GCCAAGAAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR-3UTR GCA 90 bp TTATACATTTGCTTGACGCCTAAGCAAGCATCAGGAGACCAACTCTCAGCTTCTCAAAACCACAGTGAATaGCAGAGGAAGCACATAGGA +
Preference number: 2 (lower is better)
Translates to: LYICLTPKQASGDQLSASQNHSE*QRKHIG
Trigger: TCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTG...AGAAGCTGAGAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000607882.5
3UTR-3UTR CCA 90 bp TTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTCTTGGCCTTCTCGACTCTTTCTaGAGGCACTTTCCCACGAGT +
Preference number: 2 (lower is better)
Translates to: FSCNSICPIYEVFFQFLGLLDSF*RHFPTS
Trigger: ACTCGTGGGAAAGTGCCTCCAGAAAGAGTCGAGAAG...GCCAAGAAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR-3UTR TCA 90 bp AGAAAAGGTTCTACAATGCAGGTAGCTGTCAAGCCTCCTAAATATTTAACTCGTGCCCCAGGAGACATCTaGCTATGTCTGGAGAGAATT +
Preference number: 2 (lower is better)
Translates to: RKGSTMQVAVKPPKYLTRAPGDI*LCLERI
Trigger: AATTCTCTCCAGACATAGTCAGATGTCTCCTGGGGC...ACGAGTTAAATATTTAGGAGGCTTGACAGCTACCTGCATTGTAGAACCTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR TCA 90 bp TTATACATTTGCTTGACGCCTAAGCAAGCATCAGGAGACCAACTCTCAGCTTCTCGATCAAAATCCTCCTaGCTTAGATTCAAAGACTGG +
Preference number: 2 (lower is better)
Translates to: LYICLTPKQASGDQLSASRSKSS*LRFKDW
Trigger: CCAGTCTTTGAATCTAAGTCAGGAGGATTTTGATCG...AGAAGCTGAGAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR-3UTR CCA 90 bp AGAAAAGGTTCTACAATGCAGGTAGCTGTCAAGCCTCCTAAATATTTAACTCGTGTCAAATGTATATTATaGAGGCTGCAAGGCGCCCCT +
Preference number: 2 (lower is better)
Translates to: RKGSTMQVAVKPPKYLTRVKCIL*RLQGAP
Trigger: AGGGGCGCCTTGCAGCCTCCATAATATACATTTGAC...ACGAGTTAAATATTTAGGAGGCTTGACAGCTACCTGCATTGTAGAACCTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR CAA 90 bp TTTATACCCACCCTGGTTTTATTCCAAAGTTACTGCTCTGCAATTTaGGGCTCCATCCTTAGGAAGATACTGGAAAAGCAAGAGAACCTT +
Preference number: 2 (lower is better)
Translates to: FIPTLVLFQSYCSAI*GSILRKILEKQENL
Trigger: AAGGTTCTCTTGCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAATTGCAGAGCAGTAACTTTGGAATAAAACCAGGGTGGGTATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
3UTR-3UTR TCA 90 bp AGAAAAGGTTCTACAATGCAGGTAGCTGTCAAGCCTCCTAAATATTTAACTCGTCATCACACTGTGCATTaGGTGCAAGATTCTTTGGTT +
Preference number: 2 (lower is better)
Translates to: RKGSTMQVAVKPPKYLTRHHTVH*VQDSLV
Trigger: AACCAAAGAATCTTGCACTCAATGCACAGTGTGATG...ACGAGTTAAATATTTAGGAGGCTTGACAGCTACCTGCATTGTAGAACCTTTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR GCA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTACAAAACCACAGTGAATaGCAGAGGAAGCACATAGGA +
Preference number: 2 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLQNHSE*QRKHIG
Trigger: TCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTG...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
3UTR-3UTR TCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCACACACAAGCCTTAAATaGATCTGTATCAGTAACTCA +
Preference number: 2 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSHTSLK*ICISNS
Trigger: TGAGTTACTGATACAGATTCATTTAAGGCTTGTGTG...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
3UTR-3UTR TCA 90 bp ATTATTTACCAAAACCACAGTGAATGCCAGAGGAAGCACATAGGAAAATCATGGCACACAAGCCTTAAATaGATCTGTATCAGTAACTCA +
Preference number: 2 (lower is better)
Translates to: IIYQNHSECQRKHIGKSWHTSLK*ICISNS
Trigger: TGAGTTACTGATACAGATTCATTTAAGGCTTGTGTG...CCATGATTTTCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAAATAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
3UTR GCA 72 bp GTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTaGATCTCACAGCTGAGGGACCCCGTCACCTCTCAC +
Preference number: 3 (lower is better)
Translates to: VKCILWRLQGAP*ISQLRDPVTSH
Trigger: GTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR CAA 90 bp ACCCACCCTGGTTTTATTCCAAAGTTACTGCTCTGCAATTTTGGGCTCCATCCTGCTGCAAGGCGCCCCTaGCATCTCACAGCTGAGGGA +
Preference number: 3 (lower is better)
Translates to: THPGFIPKLLLCNFGLHPAARRP*HLTAEG
Trigger: TCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGC...AGGATGGAGCCCAAAATTGCAGAGCAGTAACTTTGGAATAAAACCAGGGTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
3UTR-3UTR CAA 90 bp TCAGTGGTTCTTAACGGAGGGGTGATATGGCCCCAGGAGACATCTGACTATGTCCTAGATCCCAATCAGTaGAGTGTAGTAAGGGCTACC +
Preference number: 3 (lower is better)
Translates to: SVVLNGGVIWPQETSDYVLDPNQ*SVVRAT
Trigger: GGTAGCCCTTACTACACTCAACTGATTGGGATCTAG...GACATAGTCAGATGTCTCCTGGGGCCATATCACCCCTCCGTTAAGAACCACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR CCA 72 bp AAGCATCAGGAGACCAACTCTCAGCTTCTTGCTTCCTaGGAGAGGTCTGGCCAGACATGTAGCGATCAAAAT +
Preference number: 3 (lower is better)
Translates to: KHQETNSQLLAS*ERSGQTCSDQN
Trigger: ATTTTGATCGCTACATGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGTTGGTCTCCTGATGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR-3UTR CAA 90 bp TTCTGGAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAACTAGATCCCAATCAGTaGAGTGTAGTAAGGGCTACC +
Preference number: 3 (lower is better)
Translates to: FWRHFPTSLHPFGHIVVELDPNQ*SVVRAT
Trigger: GGTAGCCCTTACTACACTCAACTGATTGGGATCTAG...TTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
3UTR TCA 72 bp GTGGCCCCACAACAAACACCTCTCAGGCCACTAATATaGATAGTCCCGAGGTTGAAATGTCCTGAAAAAGGT +
Preference number: 3 (lower is better)
Translates to: VAPQQTPLRPLI*IVPRLKCPEKG
Trigger: ACCTTTTTCAGGACATTTCAACCTCGGGACTATTCATATTAGTGGCCTGAGAGGTGTTTGTTGTGGGGCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR CCA 72 bp ACATGTCTAGACGTTTGCAAAGTCAAATGTATATTATaGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTG +
Preference number: 3 (lower is better)
Translates to: TCLDVCKVKCIL*RLQGAPCISQL
Trigger: CAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGACATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR CAA 90 bp ACCCACCCTGGTTTTATTCCAAAGTTACTGCTCTGCAATTTTGGGCTCCATCCTCATCTTAAGGGGAGTTaGTCTAAACACTTCTCGAGT +
Preference number: 3 (lower is better)
Translates to: THPGFIPKLLLCNFGLHPHLKGS*SKHFSS
Trigger: ACTCGAGAAGTGTTTAGACAAACTCCCCTTAAGATG...AGGATGGAGCCCAAAATTGCAGAGCAGTAACTTTGGAATAAAACCAGGGTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
3UTR-3UTR CAA 90 bp TCTAGACGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGCATCTTAAGGGGAGTTaGTCTAAACACTTCTCGAGT +
Preference number: 3 (lower is better)
Translates to: SRRLQSQMYIMEAARRPLHLKGS*SKHFSS
Trigger: ACTCGAGAAGTGTTTAGACAAACTCCCCTTAAGATG...CAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR TCA 72 bp ACTGAGACAAGAGATCCAAGTTCTTATACATTTGCTTaGCGCCTAAGCAAGCATCAGGAGACCAACTCTCAG +
Preference number: 3 (lower is better)
Translates to: TETRDPSSYTFA*RLSKHQETNSQ
Trigger: CTGAGAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTTGGATCTCTTGTCTCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR CCA 72 bp GTTAACATCACACTGTGCATTGAGTGCAAGATTCTTTaGTTACACCATATTAACCACCAGGAGGATAACTCC +
Preference number: 3 (lower is better)
Translates to: VNITLCIECKIL*LHHINHQEDNS
Trigger: GGAGTTATCCTCCTGGTGGTTAATATGGTGTAACCAAAGAATCTTGCACTCAATGCACAGTGTGATGTTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR-3UTR CAA 90 bp TTGAACTTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTCCTGAATTTCCTTCTTaGATCCGACCCTGGAAGATG +
Preference number: 3 (lower is better)
Translates to: LNFSCNSICPIYEVFFQFPEFPS*IRPWKM
Trigger: CATCTTCCAGGGTCGGATCAAAGAAGGAAATTCAGG...AAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAAGTTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000484547.7
3UTR TCA 72 bp TTTTCAACGTTTTCAGAGTCAATAGCTGCTAACGGTTaGTTCGGAGGCTTAATTTCCAGTGGGTATTTCTCA +
Preference number: 3 (lower is better)
Translates to: FSTFSESIAANG*FGGLISSGYFS
Trigger: TGAGAAATACCCACTGGAAATTAAGCCTCCGAATCAACCGTTAGCAGCTATTGACTCTGAAAACGTTGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR-3UTR CAA 90 bp TTGAACTTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTTCATTCTTGGTGATCTaGATGGCATTGAAGATGTGC +
Preference number: 3 (lower is better)
Translates to: LNFSCNSICPIYEVFFQFSFLVI*MALKMC
Trigger: GCACATCTTCAATGCCATCAAGATCACCAAGAATGA...AAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAAGTTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR TCA 72 bp GCTTCATTCATGATCCTTTCTTGTCGTTCATTCAACTaGGACAAGAGATCCAAGTTCTTATACATTTGCTTG +
Preference number: 3 (lower is better)
Translates to: ASFMILSCRSFN*DKRSKFLYICL
Trigger: CAAGCAAATGTATAAGAACTTGGATCTCTTGTCTCAGTTGAATGAACGACAAGAAAGGATCATGAATGAAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
3UTR TCA 72 bp TCATCAATGGTATATTTAGGTTATAGAAGGTTCCACTaGGATAAGAAAAGGTTCTACAATGCAGGTAGCTGT +
Preference number: 3 (lower is better)
Translates to: SSMVYLGYRRFH*DKKRFYNAGSC
Trigger: ACAGCTACCTGCATTGTAGAACCTTTTCTTATCTCAGTGGAACCTTCTATAACCTAAATATACCATTGATGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp CTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATCTTGCATCTCACAGCTaGGGGACCCCGTCACCTCTC +
Preference number: 4 (lower is better)
Translates to: LQGAPCISQLRDPVTSHHLASHS*GTPSPL
Trigger: GAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAG...ATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp ATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCTGCAAGGCGCCCCTTaGATCTCACAGCTGAGGGAC +
Preference number: 4 (lower is better)
Translates to: IMEAARRPLHLTAEGPRHLQGAP*ISQLRD
Trigger: GTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG...GTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp GAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACCAGCTTCTTGCTTCCTaGGAGAGGTCTGGCCAGACA +
Preference number: 4 (lower is better)
Translates to: EAHSFPPSIPGPVPAPSHQLLAS*ERSGQT
Trigger: TGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTG...GTGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp ATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACAACGGAGGGGTGATATaGCCCCAGGAGACATCTGAC +
Preference number: 4 (lower is better)
Translates to: IMEAARRPLHLTAEGPRHNGGVI*PQETSD
Trigger: GTCAGATGTCTCCTGGGGCCATATCACCCCTCCGTT...GTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp GAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACTCTAGAACGGTGCCCTaGGGCCTCATGCACGATTTC +
Preference number: 4 (lower is better)
Translates to: EAHSFPPSIPGPVPAPSHSRTVP*GLMHDF
Trigger: GAAATCGTGCATGAGGCCCCAGGGCACCGTTCTAGA...GTGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR TCA 90 bp ATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCCCAGCGCAGGGCTCTaGTTCTCTTTTGAATGGCAA +
Preference number: 4 (lower is better)
Translates to: IMEAARRPLHLTAEGPRHPSAGL*FSFEWQ
Trigger: TTGCCATTCAAAAGAGAATCAGAGCCCTGCGCTGGG...GTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp GAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACCAACTCTCAGCTTCTTaGTTCCTGGGAGAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: EAHSFPPSIPGPVPAPSHQLSAS*FLGEVW
Trigger: CCAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGTTG...GTGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp TTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCCTGAGCACACAGCTCGCCCGCGTCTaGGCCGTGGTCCAGGTCACC +
Preference number: 4 (lower is better)
Translates to: FPTSLHPFGHIVVEILSTQLARV*AVVQVT
Trigger: GGTGACCTGGACCACGGCGCAGACGCGGGCGAGCTG...TGTGCTCAGGATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR CCA 90 bp CCTTCTGTGCGAGCTTGGGAACCAGCTGACTCAGTGAACTGCTTCCTGTCTTCATCTTCTTCCTCCCGCTaGAGTCGCTCCGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: PSVRAWEPADSVNCFLSSSSSSR*SRSASS
Trigger: GGAGCTGGCGGAGCGACTCCAGCGGGAGGAAGAAGA...TGAAGACAGGAAGCAGTTCACTGAGTCAGCTGGTTCCCAAGCTCGCACAGAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CCA 90 bp AGAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACAGCTTCTTGCTTCCTaGGAGAGGTCTGGCCAGACA +
Preference number: 4 (lower is better)
Translates to: RGPFIPAFHSRPSACSFSQLLAS*ERSGQT
Trigger: TGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTG...TGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp CTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCCTGAGCACAAGGGTCGAGCGGAGTaGGGTACCGCCCTGACGCCC +
Preference number: 4 (lower is better)
Translates to: LSHEFASFRPHCGRNPEHKGRAE*GTALTP
Trigger: GGGCGTCAGGGCGGTACCCCACTCCGCTCGACCCTT...GTGCTCAGGATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR TCA 90 bp AGAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACCCAGCGCAGGGCTCTaGTTCTCTTTTGAATGGCAA +
Preference number: 4 (lower is better)
Translates to: RGPFIPAFHSRPSACSFSPSAGL*FSFEWQ
Trigger: TTGCCATTCAAAAGAGAATCAGAGCCCTGCGCTGGG...TGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp AAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACTCTTCTTCCTCCCGCTaGAGTCGCTCCGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: KCILWRLQGAPCISQLRDSSSSR*SRSASS
Trigger: GGAGCTGGCGGAGCGACTCCAGCGGGAGGAAGAAGA...GTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAATATACATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp CTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATATAGCTGCTAACGGTTaGTTCGGAGGCTTAATTTCC +
Preference number: 4 (lower is better)
Translates to: LQGAPCISQLRDPVTSHHIAANG*FGGLIS
Trigger: GGAAATTAAGCCTCCGAATCAACCGTTAGCAGCTAT...ATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp AAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCTTGCATCTCACAGCTaGGGGACCCCGTCACCTCTC +
Preference number: 4 (lower is better)
Translates to: KCILWRLQGAPCISQLRDLASHS*GTPSPL
Trigger: GAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAG...GTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAATATACATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp AGAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCATGGCAGGAATGCTGCTaGACATTCTACCATGCACAG +
Preference number: 4 (lower is better)
Translates to: RGPFIPAFHSRPSACSFSWQECC*TFYHAQ
Trigger: CTGTGCATGGTAGAATGTTCAGCAGCATTCCTGCCA...TGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp CTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATCCAAAGTTACTGCTCTaGAATTTTGGGCTCCATCCT +
Preference number: 4 (lower is better)
Translates to: LQGAPCISQLRDPVTSHHPKLLL*NFGLHP
Trigger: AGGATGGAGCCCAAAATTGCAGAGCAGTAACTTTGG...ATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CCA 90 bp AGAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACTTCTCGACTCTTTCTaGAGGCACTTTCCCACGAGT +
Preference number: 4 (lower is better)
Translates to: RGPFIPAFHSRPSACSFSLLDSF*RHFPTS
Trigger: ACTCGTGGGAAAGTGCCTCCAGAAAGAGTCGAGAAG...TGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp CCTTCTGTGCGAGCTTGGGAACCAGCTGACTCAGTGAACTGCTTCCTGTCTTCACCATTCCAGGCCCAGTaGCTGCTCCTTCTCACTGAA +
Preference number: 4 (lower is better)
Translates to: PSVRAWEPADSVNCFLSSPFQAQ*LLLLTE
Trigger: TTCAGTGAGAAGGAGCAGGCACTGGGCCTGGAATGG...TGAAGACAGGAAGCAGTTCACTGAGTCAGCTGGTTCCCAAGCTCGCACAGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR TCA 90 bp CTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATCACACAAGCCTTAAATaGATCTGTATCAGTAACTCA +
Preference number: 4 (lower is better)
Translates to: LQGAPCISQLRDPVTSHHHTSLK*ICISNS
Trigger: TGAGTTACTGATACAGATTCATTTAAGGCTTGTGTG...ATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp GAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCCTAGCAGGAGGATCACTTaGGCCCAGGAAGCAGAGGTT +
Preference number: 4 (lower is better)
Translates to: EALSHEFASFRPHCGRNPSRRIT*AQEAEV
Trigger: AACCTCTGCTTCCTGGGCTCAAGTGATCCTCCTGCT...AGGATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS-3UTR CCA 90 bp CTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATACATCTGACTATGTCTaGAGAGAATTTTTCACAGCT +
Preference number: 4 (lower is better)
Translates to: LQGAPCISQLRDPVTSHHTSDYV*REFFTA
Trigger: AGCTGTGAAAAATTCTCTCCAGACATAGTCAGATGT...ATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp GAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACCAGGAGGATAACTCCTaGTTTGTAAAAGACATCAGT +
Preference number: 4 (lower is better)
Translates to: EAHSFPPSIPGPVPAPSHQEDNS*FVKDIS
Trigger: ACTGATGTCTTTTACAAACCAGGAGTTATCCTCCTG...GTGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp CTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATGAGTGCAAGATTCTTTaGTTACACCATATTAACCAC +
Preference number: 4 (lower is better)
Translates to: LQGAPCISQLRDPVTSHHECKIL*LHHINH
Trigger: GTGGTTAATATGGTGTAACCAAAGAATCTTGCACTC...ATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp CTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCTCTCACCATTCCTTAGGAAGATACTaGAAAAGCAAGAGAACCTTT +
Preference number: 4 (lower is better)
Translates to: LQGAPCISQLRDPVTSHHSLGRY*KSKRTF
Trigger: AAAGGTTCTCTTGCTTTTCCAGTATCTTCCTAAGGA...ATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CCA 90 bp TGGGAGAGGTCTGGCCAGACATGTAGCGATCAAAATCCTCCTGACTTAGATTCAAGTTCGAGACCAGCCTaGGCCACAGAGCAAGGTCAC +
Preference number: 4 (lower is better)
Translates to: WERSGQTCSDQNPPDLDSSSRPA*ATEQGH
Trigger: GTGACCTTGCTCTGTGGCCCAGGCTGGTCTCGAACT...TGAATCTAAGTCAGGAGGATTTTGATCGCTACATGTCTGGCCAGACCTCTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR TCA 90 bp CTCGACTCTTTCTGGAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTCGTCTAGCTTCTCAATaGAAGCCACAGCACAGCACA +
Preference number: 4 (lower is better)
Translates to: LDSFWRHFPTSLHPFGHIRLASQ*KPQHST
Trigger: TGTGCTGTGCTGTGGCTTTCATTGAGAAGCTAGACG...AATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAGAAAGAGTCGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR TCA 90 bp AGAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCATCTTGGCTTCATTCATaGTCCTTTCTTGTCGTTCAT +
Preference number: 4 (lower is better)
Translates to: RGPFIPAFHSRPSACSFSSWLHS*SFLVVH
Trigger: ATGAACGACAAGAAAGGATCATGAATGAAGCCAAGA...TGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp AGAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACTCTCCACTAAATTGTaGTCATCCTGCATAAACTTG +
Preference number: 4 (lower is better)
Translates to: RGPFIPAFHSRPSACSFSLSTKL*SSCINL
Trigger: CAAGTTTATGCAGGATGATCACAATTTAGTGGAGAG...TGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp GCCCTGGGGCCTCATGCACGATTTCACAAGTATAGCTGCATAATCTGTGGATGTGCTGCCTGTGTGAAGTaGCGTTGTTCTAGAACGGTG +
Preference number: 4 (lower is better)
Translates to: ALGPHARFHKYSCIICGCAACVK*RCSRTV
Trigger: CACCGTTCTAGAACAACGTCACTTCACACAGGCAGC...ACATCCACAGATTATGCAGCTATACTTGTGAAATCGTGCATGAGGCCCCAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp TCTAGACGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGGTTGTTCTAGAACGGTaGCCTGGGGCCTCATGCACG +
Preference number: 4 (lower is better)
Translates to: SRRLQSQMYIMEAARRPLVVLER*PGASCT
Trigger: CGTGCATGAGGCCCCAGGGCACCGTTCTAGAACAAC...CAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CCA 90 bp CATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCTCTTCTTCCTCCCGCTaGAGTCGCTCCGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: HSRSQSVECSKGYLQFRLSSSSR*SRSASS
Trigger: GGAGCTGGCGGAGCGACTCCAGCGGGAGGAAGAAGA...GAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CCA 90 bp CTCACAGCTGAGGGACCCCGTCACCTCTCACCATCAGAGGCCCATTCATTCCCGGAGTGCAAGATTCTTTaGTTACACCATATTAACCAC +
Preference number: 4 (lower is better)
Translates to: LTAEGPRHLSPSEAHSFPECKIL*LHHINH
Trigger: GTGGTTAATATGGTGTAACCAAAGAATCTTGCACTC...CGGGAATGAATGGGCCTCTGATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp TGGGAGAGGTCTGGCCAGACATGTAGCGATCAAAATCCTCCTGACTTAGATTCACCCAGCGCAGGGCTCTaGTTCTCTTTTGAATGGCAA +
Preference number: 4 (lower is better)
Translates to: WERSGQTCSDQNPPDLDSPSAGL*FSFEWQ
Trigger: TTGCCATTCAAAAGAGAATCAGAGCCCTGCGCTGGG...TGAATCTAAGTCAGGAGGATTTTGATCGCTACATGTCTGGCCAGACCTCTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CCA 90 bp CTCACAGCTGAGGGACCCCGTCACCTCTCACCATCAGAGGCCCATTCATTCCCGAAAAGTCAGCTTTTGTaGGAAGTTGATATGCAGTTT +
Preference number: 4 (lower is better)
Translates to: LTAEGPRHLSPSEAHSFPKSQLL*EVDMQF
Trigger: AAACTGCATATCAACTTCCCACAAAAGCTGACTTTT...CGGGAATGAATGGGCCTCTGATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR TCA 90 bp TTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTCTTGGCCAAATCAGCCGGACATaGTGGCGGGCACCTGTGGTC +
Preference number: 4 (lower is better)
Translates to: FSCNSICPIYEVFFQFLGQISRT*WRAPVV
Trigger: GACCACAGGTGCCCGCCATCATGTCCGGCTGATTTG...GCCAAGAAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR CCA 90 bp TCAGTGGTTCTTAACGGAGGGGTGATATGGCCCCAGGAGACATCTGACTATGTCACTGCTCTGCAATTTTaGGCTCCATCCTTAGGAAGA +
Preference number: 4 (lower is better)
Translates to: SVVLNGGVIWPQETSDYVTALQF*APSLGR
Trigger: TCTTCCTAAGGATGGAGCCCAAAATTGCAGAGCAGT...GACATAGTCAGATGTCTCCTGGGGCCATATCACCCCTCCGTTAAGAACCACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR TCA 90 bp TCAGTGGTTCTTAACGGAGGGGTGATATGGCCCCAGGAGACATCTGACTATGTCTCTTATACATTTGCTTaGCGCCTAAGCAAGCATCAG +
Preference number: 4 (lower is better)
Translates to: SVVLNGGVIWPQETSDYVSYTFA*RLSKHQ
Trigger: CTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGA...GACATAGTCAGATGTCTCCTGGGGCCATATCACCCCTCCGTTAAGAACCACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp CTCTTTCTGGAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTTCTTATACATTTGCTTaGCGCCTAAGCAAGCATCAG +
Preference number: 4 (lower is better)
Translates to: LFLEALSHEFASFRPHCGSYTFA*RLSKHQ
Trigger: CTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGA...ACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAGAAAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR TCA 90 bp GCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCCTGAGTTACCAAAACCACAGTaGATGCCAGAGGAAGCACAT +
Preference number: 4 (lower is better)
Translates to: ALSHEFASFRPHCGRNPELPKPQ*MPEEAH
Trigger: ATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAA...CTCAGGATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR TCA 90 bp TCAGTGGTTCTTAACGGAGGGGTGATATGGCCCCAGGAGACATCTGACTATGTCCATCACACTGTGCATTaGGTGCAAGATTCTTTGGTT +
Preference number: 4 (lower is better)
Translates to: SVVLNGGVIWPQETSDYVHHTVH*VQDSLV
Trigger: AACCAAAGAATCTTGCACTCAATGCACAGTGTGATG...GACATAGTCAGATGTCTCCTGGGGCCATATCACCCCTCCGTTAAGAACCACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAAGGCAGGAGGATCGCTTaGGTCCAGGAGTTCGAGACC +
Preference number: 4 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKGRRIA*VQEFET
Trigger: GGTCTCGAACTCCTGGACTCAAGCGATCCTCCTGCC...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR GCA 90 bp ATTATTTACCAAAACCACAGTGAATGCCAGAGGAAGCACATAGGAAAATCATGGCTGCAAGGCGCCCCTTaGATCTCACAGCTGAGGGAC +
Preference number: 4 (lower is better)
Translates to: IIYQNHSECQRKHIGKSWLQGAP*ISQLRD
Trigger: GTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAG...CCATGATTTTCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAAATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp TCTAGACGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGGTATATTATGGAGGCTaGAAGGCGCCCCTTGCATCT +
Preference number: 4 (lower is better)
Translates to: SRRLQSQMYIMEAARRPLVYYGG*KAPLAS
Trigger: AGATGCAAGGGGCGCCTTGCAGCCTCCATAATATAC...CAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp TTGAACTTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTTCTTCTTCCTCCCGCTaGAGTCGCTCCGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LNFSCNSICPIYEVFFQFSSSSR*SRSASS
Trigger: GGAGCTGGCGGAGCGACTCCAGCGGGAGGAAGAAGA...AAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAAGTTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR CCA 90 bp CTCTTTCTGGAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTCTTAGATTCAAAGACTaGGCGTCTAGCTTCTCAATG +
Preference number: 4 (lower is better)
Translates to: LFLEALSHEFASFRPHCGLRFKD*ASSFSM
Trigger: CATTGAGAAGCTAGACGCCCAGTCTTTGAATCTAAG...ACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAGAAAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR TCA 90 bp CTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCCTGAGCACTCTTATACATTTGCTTaGCGCCTAAGCAAGCATCAG +
Preference number: 4 (lower is better)
Translates to: LSHEFASFRPHCGRNPEHSYTFA*RLSKHQ
Trigger: CTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGA...GTGCTCAGGATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR TCA 90 bp ACTCTCAGCTTCTTGCTTCCTGGGAGAGGTCTGGCCAGACATGTAGCGATCAAACTCTCCACTAAATTGTaGTCATCCTGCATAAACTTG +
Preference number: 4 (lower is better)
Translates to: TLSFLLPGRGLARHVAIKLSTKL*SSCINL
Trigger: CAAGTTTATGCAGGATGATCACAATTTAGTGGAGAG...TTTGATCGCTACATGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR TCA 90 bp TCTAGACGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGTCTCAGCTGCCTGTGTaGAGTGACGTTGTTCTAGAA +
Preference number: 4 (lower is better)
Translates to: SRRLQSQMYIMEAARRPLSQLPV*SDVVLE
Trigger: TTCTAGAACAACGTCACTTCACACAGGCAGCTGAGA...CAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CCA 90 bp TCTAGACGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGGTCAAATGTATATTATaGAGGCTGCAAGGCGCCCCT +
Preference number: 4 (lower is better)
Translates to: SRRLQSQMYIMEAARRPLVKCIL*RLQGAP
Trigger: AGGGGCGCCTTGCAGCCTCCATAATATACATTTGAC...CAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCACCCAGCGCAGGGCTCTaGTTCTCTTTTGAATGGCAA +
Preference number: 4 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSPSAGL*FSFEWQ
Trigger: TTGCCATTCAAAAGAGAATCAGAGCCCTGCGCTGGG...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp AAAGTTACTGCTCTGCAATTTTGGGCTCCATCCTTAGGAAGATACTGGAAAAGCTGGCAGGAATGCTGCTaGACATTCTACCATGCACAG +
Preference number: 4 (lower is better)
Translates to: KVTALQFWAPSLGRYWKSWQECC*TFYHAQ
Trigger: CTGTGCATGGTAGAATGTTCAGCAGCATTCCTGCCA...GCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAATTGCAGAGCAGTAACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp AAAGTTACTGCTCTGCAATTTTGGGCTCCATCCTTAGGAAGATACTGGAAAAGCGTATATTATGGAGGCTaGAAGGCGCCCCTTGCATCT +
Preference number: 4 (lower is better)
Translates to: KVTALQFWAPSLGRYWKSVYYGG*KAPLAS
Trigger: AGATGCAAGGGGCGCCTTGCAGCCTCCATAATATAC...GCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAATTGCAGAGCAGTAACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTACTGGACGGGAGGAAGTaGGAGTGGATCCAAAGGGTC +
Preference number: 4 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLLDGRK*EWIQRV
Trigger: GACCCTTTGGATCCACTCGCACTTCCTCCCGTCCAG...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR CCA 90 bp AGGCTTAATTTCCAGTGGGTATTTCTCAACGATGTCTTGAACTTCTCTTGCAATCAGCTTCTTGCTTCCTaGGAGAGGTCTGGCCAGACA +
Preference number: 4 (lower is better)
Translates to: RLNFQWVFLNDVLNFSCNQLLAS*ERSGQT
Trigger: TGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTG...ATTGCAAGAGAAGTTCAAGACATCGTTGAGAAATACCCACTGGAAATTAAGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CCA 90 bp AGAAAAGGTTCTACAATGCAGGTAGCTGTCAAGCCTCCTAAATATTTAACTCGTAACGGAGGGGTGATATaGCCCCAGGAGACATCTGAC +
Preference number: 4 (lower is better)
Translates to: RKGSTMQVAVKPPKYLTRNGGVI*PQETSD
Trigger: GTCAGATGTCTCCTGGGGCCATATCACCCCTCCGTT...ACGAGTTAAATATTTAGGAGGCTTGACAGCTACCTGCATTGTAGAACCTTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp AGAAATCCTGAGCACACTCTGACTGTTCTTCAATGCTTAGATCCCTTTTGTAATCCCAGCGCAGGGCTCTaGTTCTCTTTTGAATGGCAA +
Preference number: 4 (lower is better)
Translates to: RNPEHTLTVLQCLDPFCNPSAGL*FSFEWQ
Trigger: TTGCCATTCAAAAGAGAATCAGAGCCCTGCGCTGGG...ATTACAAAAGGGATCTAAGCATTGAAGAACAGTCAGAGTGTGCTCAGGATTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS-3UTR TCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCACGTCTAGCTTCTCAATaGAAGCCACAGCACAGCACA +
Preference number: 4 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSRLASQ*KPQHST
Trigger: TGTGCTGTGCTGTGGCTTTCATTGAGAAGCTAGACG...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp ACCCACCCTGGTTTTATTCCAAAGTTACTGCTCTGCAATTTTGGGCTCCATCCTCGATCAAAATCCTCCTaGCTTAGATTCAAAGACTGG +
Preference number: 4 (lower is better)
Translates to: THPGFIPKLLLCNFGLHPRSKSS*LRFKDW
Trigger: CCAGTCTTTGAATCTAAGTCAGGAGGATTTTGATCG...AGGATGGAGCCCAAAATTGCAGAGCAGTAACTTTGGAATAAAACCAGGGTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR TCA 90 bp TGGGAGAGGTCTGGCCAGACATGTAGCGATCAAAATCCTCCTGACTTAGATTCATCTTGGCTTCATTCATaGTCCTTTCTTGTCGTTCAT +
Preference number: 4 (lower is better)
Translates to: WERSGQTCSDQNPPDLDSSWLHS*SFLVVH
Trigger: ATGAACGACAAGAAAGGATCATGAATGAAGCCAAGA...TGAATCTAAGTCAGGAGGATTTTGATCGCTACATGTCTGGCCAGACCTCTCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR TCA 90 bp CTGGAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCACACAAGCCTTAAATaGATCTGTATCAGTAACTCA +
Preference number: 4 (lower is better)
Translates to: LEALSHEFASFRPHCGRNHTSLK*ICISNS
Trigger: TGAGTTACTGATACAGATTCATTTAAGGCTTGTGTG...ATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR TCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAGCCCCAGGAGACATCTaGCTATGTCTGGAGAGAATT +
Preference number: 4 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSAPGDI*LCLERI
Trigger: AATTCTCTCCAGACATAGTCAGATGTCTCCTGGGGC...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAAAGCTTGGGAACCAGCTaGCTCAGTGAACTGCTTCCT +
Preference number: 4 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKSLGTS*LSELLP
Trigger: AGGAAGCAGTTCACTGAGTCAGCTGGTTCCCAAGCT...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp CTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCCTGAGCACAAGTTCTTATACATTTaGTTGACGCCTAAGCAAGCA +
Preference number: 4 (lower is better)
Translates to: LSHEFASFRPHCGRNPEHKFLYI*LTPKQA
Trigger: TGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTT...GTGCTCAGGATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR GCA 90 bp GCCCTGGGGCCTCATGCACGATTTCACAAGTATAGCTGCATAATCTGTGGATGTACATATAAAATGCCATaGACAGCAGACACCATTCTT +
Preference number: 4 (lower is better)
Translates to: ALGPHARFHKYSCIICGCTYKMP*TADTIL
Trigger: AAGAATGGTGTCTGCTGTGCATGGCATTTTATATGT...ACATCCACAGATTATGCAGCTATACTTGTGAAATCGTGCATGAGGCCCCAGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAGCTGACTCAGTGAACTaGTTCCTGTCTTCAGTGCGT +
Preference number: 4 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSADSVN*FLSSVR
Trigger: ACGCACTGAAGACAGGAAGCAGTTCACTGAGTCAGC...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAACTTATCACCTTCTGTaGGAGCTTGGGAACCAGCTG +
Preference number: 4 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSTYHLL*ELGNQL
Trigger: CAGCTGGTTCCCAAGCTCGCACAGAAGGTGATAAGT...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CCA 90 bp TCTAGACGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGCTTAGATTCAAAGACTaGGCGTCTAGCTTCTCAATG +
Preference number: 4 (lower is better)
Translates to: SRRLQSQMYIMEAARRPLLRFKD*ASSFSM
Trigger: CATTGAGAAGCTAGACGCCCAGTCTTTGAATCTAAG...CAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp AGTTACATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTACAGCTTCTTGCTTCCTaGGAGAGGTCTGGCCAGACA +
Preference number: 4 (lower is better)
Translates to: SYILDPNQLSVVRATYNLQLLAS*ERSGQT
Trigger: TGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTG...TAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATGTAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp TCCAAGTTCTTATACATTTGCTTGACGCCTAAGCAAGCATCAGGAGACCAACTCCGATCAAAATCCTCCTaGCTTAGATTCAAAGACTGG +
Preference number: 4 (lower is better)
Translates to: SKFLYICLTPKQASGDQLRSKSS*LRFKDW
Trigger: CCAGTCTTTGAATCTAAGTCAGGAGGATTTTGATCG...GAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR TCA 90 bp TGTGGTAGAAATCCTGAGCACACTCTGACTGTTCTTCAATGCTTAGATCCCTTTATAGCTGCTAACGGTTaGTTCGGAGGCTTAATTTCC +
Preference number: 4 (lower is better)
Translates to: CGRNPEHTLTVLQCLDPFIAANG*FGGLIS
Trigger: GGAAATTAAGCCTCCGAATCAACCGTTAGCAGCTAT...AAAGGGATCTAAGCATTGAAGAACAGTCAGAGTGTGCTCAGGATTTCTACCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS-3UTR GCA 90 bp ACCCACCCTGGTTTTATTCCAAAGTTACTGCTCTGCAATTTTGGGCTCCATCCTACACTGTGCATTGAGTaGAAGATTCTTTGGTTACAC +
Preference number: 4 (lower is better)
Translates to: THPGFIPKLLLCNFGLHPTLCIE*KILWLH
Trigger: GTGTAACCAAAGAATCTTGCACTCAATGCACAGTGT...AGGATGGAGCCCAAAATTGCAGAGCAGTAACTTTGGAATAAAACCAGGGTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp TCTAGACGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGACACTGTGCATTGAGTaGAAGATTCTTTGGTTACAC +
Preference number: 4 (lower is better)
Translates to: SRRLQSQMYIMEAARRPLTLCIE*KILWLH
Trigger: GTGTAACCAAAGAATCTTGCACTCAATGCACAGTGT...CAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp ATTATTTACCAAAACCACAGTGAATGCCAGAGGAAGCACATAGGAAAATCATGGTCTCTTGAGCCACAGTaGCCAGCAATCGTGTGCTTT +
Preference number: 4 (lower is better)
Translates to: IIYQNHSECQRKHIGKSWSLEPQ*PAIVCF
Trigger: AAAGCACACGATTGCTGGGCACTGTGGCTCAAGAGA...CCATGATTTTCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAAATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000450873.6
CDS-3UTR CCA 90 bp AATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCAGCTTCTTGCTTCCTaGGAGAGGTCTGGCCAGACA +
Preference number: 4 (lower is better)
Translates to: NQLSVVRATYNLGSNKYSQLLAS*ERSGQT
Trigger: TGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTG...AGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp AGTTACATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTACGTCTAGCTTCTCAATaGAAGCCACAGCACAGCACA +
Preference number: 4 (lower is better)
Translates to: SYILDPNQLSVVRATYNLRLASQ*KPQHST
Trigger: TGTGCTGTGCTGTGGCTTTCATTGAGAAGCTAGACG...TAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATGTAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp TGTGGTAGAAATCCTGAGCACACTCTGACTGTTCTTCAATGCTTAGATCCCTTTCGATCAAAATCCTCCTaGCTTAGATTCAAAGACTGG +
Preference number: 4 (lower is better)
Translates to: CGRNPEHTLTVLQCLDPFRSKSS*LRFKDW
Trigger: CCAGTCTTTGAATCTAAGTCAGGAGGATTTTGATCG...AAAGGGATCTAAGCATTGAAGAACAGTCAGAGTGTGCTCAGGATTTCTACCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS-3UTR TCA 90 bp CATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCTCTTATACATTTGCTTaGCGCCTAAGCAAGCATCAG +
Preference number: 4 (lower is better)
Translates to: HSRSQSVECSKGYLQFRLSYTFA*RLSKHQ
Trigger: CTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGA...GAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAATAGCTGCTAACGGTTaGTTCGGAGGCTTAATTTCC +
Preference number: 4 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSIAANG*FGGLIS
Trigger: GGAAATTAAGCCTCCGAATCAACCGTTAGCAGCTAT...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp TGGAGTGCACATCTTAAGGGGAGTTTGTCTAAACACTTCTCGAGTCATTTTAGTTTACCAAAACCACAGTaGATGCCAGAGGAAGCACAT +
Preference number: 4 (lower is better)
Translates to: WSAHLKGSLSKHFSSHFSLPKPQ*MPEEAH
Trigger: ATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAA...ACTAAAATGACTCGAGAAGTGTTTAGACAAACTCCCCTTAAGATGTGCACTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp TCTAGACGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGTATAGAAGGTTCCACTaGGATAAGAAAAGGTTCTAC +
Preference number: 4 (lower is better)
Translates to: SRRLQSQMYIMEAARRPLYRRFH*DKKRFY
Trigger: GTAGAACCTTTTCTTATCTCAGTGGAACCTTCTATA...CAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp TTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTCTTGGCCCAGGAAGCAGAGGTTaGAGTAAGTTGAAATTGCAC +
Preference number: 4 (lower is better)
Translates to: FSCNSICPIYEVFFQFLGPGSRG*SKLKLH
Trigger: GTGCAATTTCAACTTACTGCAACCTCTGCTTCCTGG...GCCAAGAAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS-3UTR CCA 90 bp AAAGTTACTGCTCTGCAATTTTGGGCTCCATCCTTAGGAAGATACTGGAAAAGCCTTAGATTCAAAGACTaGGCGTCTAGCTTCTCAATG +
Preference number: 4 (lower is better)
Translates to: KVTALQFWAPSLGRYWKSLRFKD*ASSFSM
Trigger: CATTGAGAAGCTAGACGCCCAGTCTTTGAATCTAAG...GCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAATTGCAGAGCAGTAACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
3UTR CAA 72 bp ACCCTGGTTTTATTCCAAAGTTACTGCTCTGCAATTTaGGGCTCCATCCTTAGGAAGATACTGGAAAAGCAA +
Preference number: 4 (lower is better)
Translates to: TLVLFQSYCSAI*GSILRKILEKQ
Trigger: TTGCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAATTGCAGAGCAGTAACTTTGGAATAAAACCAGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR TCA 90 bp AATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCGTCTAGCTTCTCAATaGAAGCCACAGCACAGCACA +
Preference number: 4 (lower is better)
Translates to: NQLSVVRATYNLGSNKYSRLASQ*KPQHST
Trigger: TGTGCTGTGCTGTGGCTTTCATTGAGAAGCTAGACG...AGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp CATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCCTCTCCACTAAATTGTaGTCATCCTGCATAAACTTG +
Preference number: 4 (lower is better)
Translates to: HSRSQSVECSKGYLQFRLLSTKL*SSCINL
Trigger: CAAGTTTATGCAGGATGATCACAATTTAGTGGAGAG...GAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR GCA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAACAAAACCACAGTGAATaGCAGAGGAAGCACATAGGA +
Preference number: 4 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKQNHSE*QRKHIG
Trigger: TCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTG...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR GCA 90 bp AGGCTTAATTTCCAGTGGGTATTTCTCAACGATGTCTTGAACTTCTCTTGCAATCAAAACCACAGTGAATaGCAGAGGAAGCACATAGGA +
Preference number: 4 (lower is better)
Translates to: RLNFQWVFLNDVLNFSCNQNHSE*QRKHIG
Trigger: TCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTG...ATTGCAAGAGAAGTTCAAGACATCGTTGAGAAATACCCACTGGAAATTAAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR GCA 90 bp TCCAAGTTCTTATACATTTGCTTGACGCCTAAGCAAGCATCAGGAGACCAACTCCTGACTGTTCTTCAATaGTTAGATCCCTTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: SKFLYICLTPKQASGDQLLTVLQ*LDPFFD
Trigger: ATCAAAGAAGGGATCTAAGCATTGAAGAACAGTCAG...GAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS-3UTR CCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCACTTAGATTCAAAGACTaGGCGTCTAGCTTCTCAATG +
Preference number: 4 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSLRFKD*ASSFSM
Trigger: CATTGAGAAGCTAGACGCCCAGTCTTTGAATCTAAG...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CCA 90 bp TTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTCTTGGCCTTAGATTCAAAGACTaGGCGTCTAGCTTCTCAATG +
Preference number: 4 (lower is better)
Translates to: FSCNSICPIYEVFFQFLGLRFKD*ASSFSM
Trigger: CATTGAGAAGCTAGACGCCCAGTCTTTGAATCTAAG...GCCAAGAAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR TCA 90 bp TGGAGTGCACATCTTAAGGGGAGTTTGTCTAAACACTTCTCGAGTCATTTTAGTTCTTGGCTTCATTCATaGTCCTTTCTTGTCGTTCAT +
Preference number: 4 (lower is better)
Translates to: WSAHLKGSLSKHFSSHFSSWLHS*SFLVVH
Trigger: ATGAACGACAAGAAAGGATCATGAATGAAGCCAAGA...ACTAAAATGACTCGAGAAGTGTTTAGACAAACTCCCCTTAAGATGTGCACTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCATCTTGGCTTCATTCATaGTCCTTTCTTGTCGTTCAT +
Preference number: 4 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSSWLHS*SFLVVH
Trigger: ATGAACGACAAGAAAGGATCATGAATGAAGCCAAGA...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTAATAGCTGCTAACGGTTaGTTCGGAGGCTTAATTTCC +
Preference number: 4 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLIAANG*FGGLIS
Trigger: GGAAATTAAGCCTCCGAATCAACCGTTAGCAGCTAT...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp AGTTACATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTATTACCAAAACCACAGTaGATGCCAGAGGAAGCACAT +
Preference number: 4 (lower is better)
Translates to: SYILDPNQLSVVRATYNLLPKPQ*MPEEAH
Trigger: ATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAA...TAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATGTAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR GCA 90 bp TCCAAGTTCTTATACATTTGCTTGACGCCTAAGCAAGCATCAGGAGACCAACTCCTGACTGTTCTTCAATaGTTAGATCCCTTTTGTAAT +
Preference number: 4 (lower is better)
Translates to: SKFLYICLTPKQASGDQLLTVLQ*LDPFCN
Trigger: ATTACAAAAGGGATCTAAGCATTGAAGAACAGTCAG...GAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS-3UTR GCA 90 bp AAAGTTACTGCTCTGCAATTTTGGGCTCCATCCTTAGGAAGATACTGGAAAAGCAAGTTCTTATACATTTaGTTGACGCCTAAGCAAGCA +
Preference number: 4 (lower is better)
Translates to: KVTALQFWAPSLGRYWKSKFLYI*LTPKQA
Trigger: TGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTT...GCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAATTGCAGAGCAGTAACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp ATTTTGGGCTCCATCCTTAGGAAGATACTGGAAAAGCAAGAGAACCTTTCTCAGGTTAACATCACACTGTaGATTGAGTGCAAGATTCTT +
Preference number: 4 (lower is better)
Translates to: ILGSILRKILEKQENLSQVNITL*IECKIL
Trigger: AAGAATCTTGCACTCAATGCACAGTGTGATGTTAAC...CTGAGAAAGGTTCTCTTGCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp CATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCGTTAACATCACACTGTaGATTGAGTGCAAGATTCTT +
Preference number: 4 (lower is better)
Translates to: HSRSQSVECSKGYLQFRLVNITL*IECKIL
Trigger: AAGAATCTTGCACTCAATGCACAGTGTGATGTTAAC...GAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp AATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTAGAACCTTTCTCAGCTaGCTGTGTGAAGTGACGTTG +
Preference number: 4 (lower is better)
Translates to: NQLSVVRATYNLGSNKYSRTFLS*LCEVTL
Trigger: CAACGTCACTTCACACAGGCAGCTGAGAAAGGTTCT...AGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR TCA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTACGATCAAAATCCTCCTaGCTTAGATTCAAAGACTGG +
Preference number: 4 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLRSKSS*LRFKDW
Trigger: CCAGTCTTTGAATCTAAGTCAGGAGGATTTTGATCG...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp ATTATTTACCAAAACCACAGTGAATGCCAGAGGAAGCACATAGGAAAATCATGGTCTTGGCTTCATTCATaGTCCTTTCTTGTCGTTCAT +
Preference number: 4 (lower is better)
Translates to: IIYQNHSECQRKHIGKSWSWLHS*SFLVVH
Trigger: ATGAACGACAAGAAAGGATCATGAATGAAGCCAAGA...CCATGATTTTCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAAATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp CTAAACTTTATTCTGAACCTTAGTGGTGTCATAGTCTCTGACTATATAGAACCTATAGCTGCTAACGGTTaGTTCGGAGGCTTAATTTCC +
Preference number: 4 (lower is better)
Translates to: LNFILNLSGVIVSDYIEPIAANG*FGGLIS
Trigger: GGAAATTAAGCCTCCGAATCAACCGTTAGCAGCTAT...AGGTTCTATATAGTCAGAGACTATGACACCACTAAGGTTCAGAATAAAGTTTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAAATCTGTGGATGTCACTaGATGGAAGAAGAATCATCA +
Preference number: 4 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKICGCH*MEEESS
Trigger: TGATGATTCTTCTTCCATTCAGTGACATCCACAGAT...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp ATTTTGGGCTCCATCCTTAGGAAGATACTGGAAAAGCAAGAGAACCTTTCTCAGCTGACTGTTCTTCAATaGTTAGATCCCTTTTGTAAT +
Preference number: 4 (lower is better)
Translates to: ILGSILRKILEKQENLSQLTVLQ*LDPFCN
Trigger: ATTACAAAAGGGATCTAAGCATTGAAGAACAGTCAG...CTGAGAAAGGTTCTCTTGCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR GCA 90 bp CATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCCTGACTGTTCTTCAATaGTTAGATCCCTTTTGTAAT +
Preference number: 4 (lower is better)
Translates to: HSRSQSVECSKGYLQFRLLTVLQ*LDPFCN
Trigger: ATTACAAAAGGGATCTAAGCATTGAAGAACAGTCAG...GAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
CDS-3UTR GCA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAAGTTCTTATACATTTaGTTGACGCCTAAGCAAGCA +
Preference number: 4 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSKFLYI*LTPKQA
Trigger: TGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTT...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR GCA 90 bp TTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTCTTGGCAAGTTCTTATACATTTaGTTGACGCCTAAGCAAGCA +
Preference number: 4 (lower is better)
Translates to: FSCNSICPIYEVFFQFLGKFLYI*LTPKQA
Trigger: TGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTT...GCCAAGAAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR GCA 90 bp TGGAGTGCACATCTTAAGGGGAGTTTGTCTAAACACTTCTCGAGTCATTTTAGTTTTCACAAGTATAGCTaGATAATCTGTGGATGTCAC +
Preference number: 4 (lower is better)
Translates to: WSAHLKGSLSKHFSSHFSFHKYS*IICGCH
Trigger: GTGACATCCACAGATTATGCAGCTATACTTGTGAAA...ACTAAAATGACTCGAGAAGTGTTTAGACAAACTCCCCTTAAGATGTGCACTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CCA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTAAGACTTGATACAGGTTaGATGTCACTGCTTCCCAAA +
Preference number: 4 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLRLDTG*MSLLPK
Trigger: TTTGGGAAGCAGTGACATCCAACCTGTATCAAGTCT...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
3UTR CAA 72 bp AGGCTTAATTTCCAGTGGGTATTTCTCAACGATGTCTaGAACTTCTCTTGCAATTCCATCTGTCCAATCTAT +
Preference number: 4 (lower is better)
Translates to: RLNFQWVFLNDV*NFSCNSICPIY
Trigger: ATAGATTGGACAGATGGAATTGCAAGAGAAGTTCAAGACATCGTTGAGAAATACCCACTGGAAATTAAGCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR TCA 90 bp AATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCGATCAAAATCCTCCTaGCTTAGATTCAAAGACTGG +
Preference number: 4 (lower is better)
Translates to: NQLSVVRATYNLGSNKYSRSKSS*LRFKDW
Trigger: CCAGTCTTTGAATCTAAGTCAGGAGGATTTTGATCG...AGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR TCA 90 bp CTAAACTTTATTCTGAACCTTAGTGGTGTCATAGTCTCTGACTATATAGAACCTTCTTATACATTTGCTTaGCGCCTAAGCAAGCATCAG +
Preference number: 4 (lower is better)
Translates to: LNFILNLSGVIVSDYIEPSYTFA*RLSKHQ
Trigger: CTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGA...AGGTTCTATATAGTCAGAGACTATGACACCACTAAGGTTCAGAATAAAGTTTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp AATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCATCACACTGTGCATTaGGTGCAAGATTCTTTGGTT +
Preference number: 4 (lower is better)
Translates to: NQLSVVRATYNLGSNKYSHHTVH*VQDSLV
Trigger: AACCAAAGAATCTTGCACTCAATGCACAGTGTGATG...AGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp ATTATTTACCAAAACCACAGTGAATGCCAGAGGAAGCACATAGGAAAATCATGGAAGTTCTTATACATTTaGTTGACGCCTAAGCAAGCA +
Preference number: 4 (lower is better)
Translates to: IIYQNHSECQRKHIGKSWKFLYI*LTPKQA
Trigger: TGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTT...CCATGATTTTCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAAATAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR GCA 90 bp ATTATTTACCAAAACCACAGTGAATGCCAGAGGAAGCACATAGGAAAATCATGGACATATAAAATGCCATaGACAGCAGACACCATTCTT +
Preference number: 4 (lower is better)
Translates to: IIYQNHSECQRKHIGKSWTYKMP*TADTIL
Trigger: AAGAATGGTGTCTGCTGTGCATGGCATTTTATATGT...CCATGATTTTCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAAATAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
CDS-3UTR TCA 90 bp CTAAACTTTATTCTGAACCTTAGTGGTGTCATAGTCTCTGACTATATAGAACCTCTCTCCACTAAATTGTaGTCATCCTGCATAAACTTG +
Preference number: 4 (lower is better)
Translates to: LNFILNLSGVIVSDYIEPLSTKL*SSCINL
Trigger: CAAGTTTATGCAGGATGATCACAATTTAGTGGAGAG...AGGTTCTATATAGTCAGAGACTATGACACCACTAAGGTTCAGAATAAAGTTTAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTATATAGAAGGTTCCACTaGGATAAGAAAAGGTTCTAC +
Preference number: 4 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLYRRFH*DKKRFY
Trigger: GTAGAACCTTTTCTTATCTCAGTGGAACCTTCTATA...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR GCA 90 bp ATTATTTACCAAAACCACAGTGAATGCCAGAGGAAGCACATAGGAAAATCATGGCTGACTGTTCTTCAATaGTTAGATCCCTTTTGTAAT +
Preference number: 4 (lower is better)
Translates to: IIYQNHSECQRKHIGKSWLTVLQ*LDPFCN
Trigger: ATTACAAAAGGGATCTAAGCATTGAAGAACAGTCAG...CCATGATTTTCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAAATAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
CDS-3UTR GCA 90 bp AGTTACATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAACATATAAAATGCCATaGACAGCAGACACCATTCTT +
Preference number: 4 (lower is better)
Translates to: SYILDPNQLSVVRATYNLTYKMP*TADTIL
Trigger: AAGAATGGTGTCTGCTGTGCATGGCATTTTATATGT...TAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATGTAACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
CDS-3UTR CCA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTAACATCTGACTATGTCTaGAGAGAATTTTTCACAGCT +
Preference number: 4 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLTSDYV*REFFTA
Trigger: AGCTGTGAAAAATTCTCTCCAGACATAGTCAGATGT...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CCA 90 bp CTAAACTTTATTCTGAACCTTAGTGGTGTCATAGTCTCTGACTATATAGAACCTCAGGAGGATAACTCCTaGTTTGTAAAAGACATCAGT +
Preference number: 4 (lower is better)
Translates to: LNFILNLSGVIVSDYIEPQEDNS*FVKDIS
Trigger: ACTGATGTCTTTTACAAACCAGGAGTTATCCTCCTG...AGGTTCTATATAGTCAGAGACTATGACACCACTAAGGTTCAGAATAAAGTTTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR TCA 90 bp CTAAACTTTATTCTGAACCTTAGTGGTGTCATAGTCTCTGACTATATAGAACCTCACACAAGCCTTAAATaGATCTGTATCAGTAACTCA +
Preference number: 4 (lower is better)
Translates to: LNFILNLSGVIVSDYIEPHTSLK*ICISNS
Trigger: TGAGTTACTGATACAGATTCATTTAAGGCTTGTGTG...AGGTTCTATATAGTCAGAGACTATGACACCACTAAGGTTCAGAATAAAGTTTAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
3UTR CAA 72 bp TATAAGCAATTTAGTTACATTCTAGATCCCAATCAGTaGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCA +
Preference number: 4 (lower is better)
Translates to: YKQFSYILDPNQ*SVVRATYNLGS
Trigger: TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATGTAACTAAATTGCTTATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp CTCACAGCTGAGGGACCCCGTCACCTCTCACCATCAGAGGCCCATTCATTCCCGTCATCCTGCATAAACTaGAGGTTGCAGTGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: LTAEGPRHLSPSEAHSFPSSCIN*RLQWWR
Trigger: CCTCCACCACTGCAACCTCAAGTTTATGCAGGATGA...CGGGAATGAATGGGCCTCTGATGGTGAGAGGTGACGGGGTCCCTCAGCTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp GAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACCTAGATCCCAATCAGTaGAGTGTAGTAAGGGCTACC +
Preference number: 5 (lower is better)
Translates to: EAHSFPPSIPGPVPAPSHLDPNQ*SVVRAT
Trigger: GGTAGCCCTTACTACACTCAACTGATTGGGATCTAG...GTGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp CTCTTTCTGGAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTCCAACTCTCAGCTTCTaGCTTCCTGGGAGAGGTCTG +
Preference number: 5 (lower is better)
Translates to: LFLEALSHEFASFRPHCGPTLSF*LPGRGL
Trigger: CAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGTTGG...ACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAGAAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp ATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACCATCTTAAGGGGAGTTaGTCTAAACACTTCTCGAGT +
Preference number: 5 (lower is better)
Translates to: IMEAARRPLHLTAEGPRHHLKGS*SKHFSS
Trigger: ACTCGAGAAGTGTTTAGACAAACTCCCCTTAAGATG...GTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp GCCCTGGGGCCTCATGCACGATTTCACAAGTATAGCTGCATAATCTGTGGATGTCCAACTCTCAGCTTCTaGCTTCCTGGGAGAGGTCTG +
Preference number: 5 (lower is better)
Translates to: ALGPHARFHKYSCIICGCPTLSF*LPGRGL
Trigger: CAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGTTGG...ACATCCACAGATTATGCAGCTATACTTGTGAAATCGTGCATGAGGCCCCAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CAA 90 bp GAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCACTTCTTATACATTTGCTaGACGCCTAAGCAAGCATCA +
Preference number: 5 (lower is better)
Translates to: EAHSFPPSIPGPVPAPSHFLYIC*TPKQAS
Trigger: TGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAA...GTGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp ATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACATTCATGATCCTTTCTaGTCGTTCATTCAACTGAGA +
Preference number: 5 (lower is better)
Translates to: IMEAARRPLHLTAEGPRHIHDPF*SFIQLR
Trigger: TCTCAGTTGAATGAACGACAAGAAAGGATCATGAAT...GTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp AGAGGCCCATTCATTCCCGCCTTCCATTCCAGGCCCAGTGCCTGCTCCTTCTCATGTCTTGAACTTCTCTaGCAATTCCATCTGTCCAAT +
Preference number: 5 (lower is better)
Translates to: RGPFIPAFHSRPSACSFSCLELL*QFHLSN
Trigger: ATTGGACAGATGGAATTGCAAGAGAAGTTCAAGACA...TGAGAAGGAGCAGGCACTGGGCCTGGAATGGAAGGCGGGAATGAATGGGCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp ACTCTCAGCTTCTTGCTTCCTGGGAGAGGTCTGGCCAGACATGTAGCGATCAAATCATCCTGCATAAACTaGAGGTTGCAGTGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: TLSFLLPGRGLARHVAIKSSCIN*RLQWWR
Trigger: CCTCCACCACTGCAACCTCAAGTTTATGCAGGATGA...TTTGATCGCTACATGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp ATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCCCGTCACGATTCTCACTGGCATTaGATAGTAACTTATCACCTT +
Preference number: 5 (lower is better)
Translates to: IMEAARRPLHLTAEGPRHDSHWH*IVTYHL
Trigger: AAGGTGATAAGTTACTATCAAATGCCAGTGAGAATC...GTGACGGGGTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CAA 90 bp TCAGTGGTTCTTAACGGAGGGGTGATATGGCCCCAGGAGACATCTGACTATGTCCCTGAATTTCCTTCTTaGATCCGACCCTGGAAGATG +
Preference number: 5 (lower is better)
Translates to: SVVLNGGVIWPQETSDYVPEFPS*IRPWKM
Trigger: CATCTTCCAGGGTCGGATCAAAGAAGGAAATTCAGG...GACATAGTCAGATGTCTCCTGGGGCCATATCACCCCTCCGTTAAGAACCACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp GCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCCTGAGTCATCCTGCATAAACTaGAGGTTGCAGTGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: ALSHEFASFRPHCGRNPESSCIN*RLQWWR
Trigger: CCTCCACCACTGCAACCTCAAGTTTATGCAGGATGA...CTCAGGATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp CTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCCTGAGCACGTTGAAATTGCACCATaGCACTCCAGCCAGGGTAAC +
Preference number: 5 (lower is better)
Translates to: LSHEFASFRPHCGRNPEHVEIAP*HSSQGN
Trigger: GTTACCCTGGCTGGAGTGCAATGGTGCAATTTCAAC...GTGCTCAGGATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS TCA 90 bp ACAGTGCCCAGCAATCGTGTGCTTTGTCTGCAGCTATGGCTGAAATaGGAGTGCAGGAGCCAAACTCTGAGGCAGGAGAACTATCAATTT +
Preference number: 5 (lower is better)
Translates to: TVPSNRVLCLQLWLK*ECRSQTLRQENYQF
Trigger: AAATTGATAGTTCTCCTGCCTCAGAGTTTGGCTCCTGCACTCTCATTTCAGCCATAGCTGCAGACAAAGCACACGATTGCTGGGCACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000442563.5
ENST00000450873.6
CDS-3UTR CAA 90 bp TCCAAGTTCTTATACATTTGCTTGACGCCTAAGCAAGCATCAGGAGACCAACTCCCAACTCTCAGCTTCTaGCTTCCTGGGAGAGGTCTG +
Preference number: 5 (lower is better)
Translates to: SKFLYICLTPKQASGDQLPTLSF*LPGRGL
Trigger: CAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGTTGG...GAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp ATTATTTACCAAAACCACAGTGAATGCCAGAGGAAGCACATAGGAAAATCATGGGCTGCAAGGCGCCCCTaGCATCTCACAGCTGAGGGA +
Preference number: 5 (lower is better)
Translates to: IIYQNHSECQRKHIGKSWAARRP*HLTAEG
Trigger: TCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGC...CCATGATTTTCCTATGTGCTTCCTCTGGCATTCACTGTGGTTTTGGTAAATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp AAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGCATCTCACAGCTGAGGGACCATCTTAAGGGGAGTTaGTCTAAACACTTCTCGAGT +
Preference number: 5 (lower is better)
Translates to: KCILWRLQGAPCISQLRDHLKGS*SKHFSS
Trigger: ACTCGAGAAGTGTTTAGACAAACTCCCCTTAAGATG...GTCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGCCTCCATAATATACATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTAGCTGCAAGGCGCCCCTaGCATCTCACAGCTGAGGGA +
Preference number: 5 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLAARRP*HLTAEG
Trigger: TCCCTCAGCTGTGAGATGCAAGGGGCGCCTTGCAGC...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp CATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCCATCTCCTCCTTCTCTaGAGCCACAGTGCCCAGCAA +
Preference number: 5 (lower is better)
Translates to: HSRSQSVECSKGYLQFRLHLLLL*SHSAQQ
Trigger: TTGCTGGGCACTGTGGCTCAAGAGAAGGAGGAGATG...GAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000450873.6
CDS-3UTR CAA 90 bp CTCGACTCTTTCTGGAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTTGTCTTGAACTTCTCTaGCAATTCCATCTGTCCAAT +
Preference number: 5 (lower is better)
Translates to: LDSFWRHFPTSLHPFGHICLELL*QFHLSN
Trigger: ATTGGACAGATGGAATTGCAAGAGAAGTTCAAGACA...AATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAGAAAGAGTCGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp TCAGTGGTTCTTAACGGAGGGGTGATATGGCCCCAGGAGACATCTGACTATGTCTTTCTCAACGATGTCTaGAACTTCTCTTGCAATTCC +
Preference number: 5 (lower is better)
Translates to: SVVLNGGVIWPQETSDYVFLNDV*NFSCNS
Trigger: GGAATTGCAAGAGAAGTTCAAGACATCGTTGAGAAA...GACATAGTCAGATGTCTCCTGGGGCCATATCACCCCTCCGTTAAGAACCACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp CTCGACTCTTTCTGGAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTTTTCTCAACGATGTCTaGAACTTCTCTTGCAATTCC +
Preference number: 5 (lower is better)
Translates to: LDSFWRHFPTSLHPFGHIFLNDV*NFSCNS
Trigger: GGAATTGCAAGAGAAGTTCAAGACATCGTTGAGAAA...AATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAGAAAGAGTCGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp CTCTTTCTGGAGGCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTATTCATGATCCTTTCTaGTCGTTCATTCAACTGAGA +
Preference number: 5 (lower is better)
Translates to: LFLEALSHEFASFRPHCGIHDPF*SFIQLR
Trigger: TCTCAGTTGAATGAACGACAAGAAAGGATCATGAAT...ACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAGAAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp GCACTTTCCCACGAGTTTGCATCCTTTCGGCCACATTGTGGTAGAAATCCTGAGTGTCTTGAACTTCTCTaGCAATTCCATCTGTCCAAT +
Preference number: 5 (lower is better)
Translates to: ALSHEFASFRPHCGRNPECLELL*QFHLSN
Trigger: ATTGGACAGATGGAATTGCAAGAGAAGTTCAAGACA...CTCAGGATTTCTACCACAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp TCTAGACGTTTGCAAAGTCAAATGTATATTATGGAGGCTGCAAGGCGCCCCTTGTGCATAAACTTGAGGTaGCAGTGGTGGAGGAAGTTT +
Preference number: 5 (lower is better)
Translates to: SRRLQSQMYIMEAARRPLCINLR*QWWRKF
Trigger: AAACTTCCTCCACCACTGCAACCTCAAGTTTATGCA...CAAGGGGCGCCTTGCAGCCTCCATAATATACATTTGACTTTGCAAACGTCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp CATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCTCATCCTGCATAAACTaGAGGTTGCAGTGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: HSRSQSVECSKGYLQFRLSSCIN*RLQWWR
Trigger: CCTCCACCACTGCAACCTCAAGTTTATGCAGGATGA...GAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp TGTGGTAGAAATCCTGAGCACACTCTGACTGTTCTTCAATGCTTAGATCCCTTTCCTGAATTTCCTTCTTaGATCCGACCCTGGAAGATG +
Preference number: 5 (lower is better)
Translates to: CGRNPEHTLTVLQCLDPFPEFPS*IRPWKM
Trigger: CATCTTCCAGGGTCGGATCAAAGAAGGAAATTCAGG...AAAGGGATCTAAGCATTGAAGAACAGTCAGAGTGTGCTCAGGATTTCTACCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS-3UTR CAA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTACCAACTCTCAGCTTCTaGCTTCCTGGGAGAGGTCTG +
Preference number: 5 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLPTLSF*LPGRGL
Trigger: CAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGTTGG...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp TTATACATTTGCTTGACGCCTAAGCAAGCATCAGGAGACCAACTCTCAGCTTCTTGCATAAACTTGAGGTaGCAGTGGTGGAGGAAGTTT +
Preference number: 5 (lower is better)
Translates to: LYICLTPKQASGDQLSASCINLR*QWWRKF
Trigger: AAACTTCCTCCACCACTGCAACCTCAAGTTTATGCA...AGAAGCTGAGAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp ATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCACCTGAATTTCCTTCTTaGATCCGACCCTGGAAGATG +
Preference number: 5 (lower is better)
Translates to: ILDPNQLSVVRATYNLGSPEFPS*IRPWKM
Trigger: CATCTTCCAGGGTCGGATCAAAGAAGGAAATTCAGG...TGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
CDS-3UTR CAA 90 bp AATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCAACTCTCAGCTTCTaGCTTCCTGGGAGAGGTCTG +
Preference number: 5 (lower is better)
Translates to: NQLSVVRATYNLGSNKYSPTLSF*LPGRGL
Trigger: CAGACCTCTCCCAGGAAGCAAGAAGCTGAGAGTTGG...AGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp TTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTCTTGGCTGCATAAACTTGAGGTaGCAGTGGTGGAGGAAGTTT +
Preference number: 5 (lower is better)
Translates to: FSCNSICPIYEVFFQFLGCINLR*QWWRKF
Trigger: AAACTTCCTCCACCACTGCAACCTCAAGTTTATGCA...GCCAAGAAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp ATTTTGGGCTCCATCCTTAGGAAGATACTGGAAAAGCAAGAGAACCTTTCTCAGACATCACACTGTGCATaGAGTGCAAGATTCTTTGGT +
Preference number: 5 (lower is better)
Translates to: ILGSILRKILEKQENLSQTSHCA*SARFFG
Trigger: ACCAAAGAATCTTGCACTCAATGCACAGTGTGATGT...CTGAGAAAGGTTCTCTTGCTTTTCCAGTATCTTCCTAAGGATGGAGCCCAAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CAA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTGCTCTGCAATTTaGGGCTCCATCCTTAGGAAG +
Preference number: 5 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKYCSAI*GSILRK
Trigger: CTTCCTAAGGATGGAGCCCAAAATTGCAGAGCAGTA...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284957.9
CDS-3UTR CAA 90 bp AGAAATCCTGAGCACACTCTGACTGTTCTTCAATGCTTAGATCCCTTTTGTAATTGCAGTAAGTTGAAATaGCACCATTGCACTCCAGCC +
Preference number: 5 (lower is better)
Translates to: RNPEHTLTVLQCLDPFCNCSKLK*HHCTPA
Trigger: GGCTGGAGTGCAATGGTGCAATTTCAACTTACTGCA...ATTACAAAAGGGATCTAAGCATTGAAGAACAGTCAGAGTGTGCTCAGGATTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS-3UTR CAA 90 bp AGTTACATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTACCTGAATTTCCTTCTTaGATCCGACCCTGGAAGATG +
Preference number: 5 (lower is better)
Translates to: SYILDPNQLSVVRATYNLPEFPS*IRPWKM
Trigger: CATCTTCCAGGGTCGGATCAAAGAAGGAAATTCAGG...TAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATGTAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
CDS-3UTR CAA 90 bp TCCAAGTTCTTATACATTTGCTTGACGCCTAAGCAAGCATCAGGAGACCAACTCATTCATGATCCTTTCTaGTCGTTCATTCAACTGAGA +
Preference number: 5 (lower is better)
Translates to: SKFLYICLTPKQASGDQLIHDPF*SFIQLR
Trigger: TCTCAGTTGAATGAACGACAAGAAAGGATCATGAAT...GAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp CATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCTTTCTCAACGATGTCTaGAACTTCTCTTGCAATTCC +
Preference number: 5 (lower is better)
Translates to: HSRSQSVECSKGYLQFRLFLNDV*NFSCNS
Trigger: GGAATTGCAAGAGAAGTTCAAGACATCGTTGAGAAA...GAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp CTAAACTTTATTCTGAACCTTAGTGGTGTCATAGTCTCTGACTATATAGAACCTTCATCCTGCATAAACTaGAGGTTGCAGTGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: LNFILNLSGVIVSDYIEPSSCIN*RLQWWR
Trigger: CCTCCACCACTGCAACCTCAAGTTTATGCAGGATGA...AGGTTCTATATAGTCAGAGACTATGACACCACTAAGGTTCAGAATAAAGTTTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATCATTCTTGGTGATCTaGATGGCATTGAAGATGTGC +
Preference number: 5 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKSFLVI*MALKMC
Trigger: GCACATCTTCAATGCCATCAAGATCACCAAGAATGA...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp AATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCTAGATCCCAATCAGTaGAGTGTAGTAAGGGCTACC +
Preference number: 5 (lower is better)
Translates to: NQLSVVRATYNLGSNKYSLDPNQ*SVVRAT
Trigger: GGTAGCCCTTACTACACTCAACTGATTGGGATCTAG...AGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAAACATCACACTGTGCATaGAGTGCAAGATTCTTTGGT +
Preference number: 5 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKTSHCA*SARFFG
Trigger: ACCAAAGAATCTTGCACTCAATGCACAGTGTGATGT...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATTCTTATACATTTGCTaGACGCCTAAGCAAGCATCA +
Preference number: 5 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKFLYIC*TPKQAS
Trigger: TGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAA...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp AGGCTTAATTTCCAGTGGGTATTTCTCAACGATGTCTTGAACTTCTCTTGCAATTTCTTATACATTTGCTaGACGCCTAAGCAAGCATCA +
Preference number: 5 (lower is better)
Translates to: RLNFQWVFLNDVLNFSCNFLYIC*TPKQAS
Trigger: TGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAA...ATTGCAAGAGAAGTTCAAGACATCGTTGAGAAATACCCACTGGAAATTAAGCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484547.7
ENST00000607882.5
CDS-3UTR CAA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATTTCTCAACGATGTCTaGAACTTCTCTTGCAATTCC +
Preference number: 5 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKFLNDV*NFSCNS
Trigger: GGAATTGCAAGAGAAGTTCAAGACATCGTTGAGAAA...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp CTAAACTTTATTCTGAACCTTAGTGGTGTCATAGTCTCTGACTATATAGAACCTTGCATAAACTTGAGGTaGCAGTGGTGGAGGAAGTTT +
Preference number: 5 (lower is better)
Translates to: LNFILNLSGVIVSDYIEPCINLR*QWWRKF
Trigger: AAACTTCCTCCACCACTGCAACCTCAAGTTTATGCA...AGGTTCTATATAGTCAGAGACTATGACACCACTAAGGTTCAGAATAAAGTTTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS-3UTR CAA 90 bp AATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTTGCATAAACTTGAGGTaGCAGTGGTGGAGGAAGTTT +
Preference number: 5 (lower is better)
Translates to: NQLSVVRATYNLGSNKYSCINLR*QWWRKF
Trigger: AAACTTCCTCCACCACTGCAACCTCAAGTTTATGCA...AGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp TTGAACTTCTCTTGCAATTCCATCTGTCCAATCTATGAGGTCTTTTTCCAGTTTAGAGGTTGCAGTAAGTaGAAATTGCACCATTGCACT +
Preference number: 5 (lower is better)
Translates to: LNFSCNSICPIYEVFFQFRGCSK*KLHHCT
Trigger: AGTGCAATGGTGCAATTTCAACTTACTGCAACCTCT...AAACTGGAAAAAGACCTCATAGATTGGACAGATGGAATTGCAAGAGAAGTTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000484547.7
CDS-3UTR CAA 90 bp AGTTACATTCTAGATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTATTCTTATACATTTGCTaGACGCCTAAGCAAGCATCA +
Preference number: 5 (lower is better)
Translates to: SYILDPNQLSVVRATYNLFLYIC*TPKQAS
Trigger: TGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAA...TAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATCTAGAATGTAACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp GATCCCAATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAAATTCATGATCCTTTCTaGTCGTTCATTCAACTGAGA +
Preference number: 5 (lower is better)
Translates to: DPNQLSVVRATYNLGSNKIHDPF*SFIQLR
Trigger: TCTCAGTTGAATGAACGACAAGAAAGGATCATGAAT...TTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATTGGGATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp TTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTCCACTATGTCTTGAACTTCTCTaGCAATTCCATCTGTCCAAT +
Preference number: 5 (lower is better)
Translates to: LSVVRATYNLGSNKYSPLCLELL*QFHLSN
Trigger: ATTGGACAGATGGAATTGCAAGAGAAGTTCAAGACA...TAGTGGAGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp AATCAGTTGAGTGTAGTAAGGGCTACCTACAATTTAGGCTCAAATAAATACTCTTTCTTATACATTTGCTaGACGCCTAAGCAAGCATCA +
Preference number: 5 (lower is better)
Translates to: NQLSVVRATYNLGSNKYSFLYIC*TPKQAS
Trigger: TGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAA...AGAGTATTTATTTGAGCCTAAATTGTAGGTAGCCCTTACTACACTCAACTGATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284957.9
ENST00000439720.3
ENST00000450873.6
ENST00000607882.5
CDS-3UTR CAA 90 bp CTAAACTTTATTCTGAACCTTAGTGGTGTCATAGTCTCTGACTATATAGAACCTTTTCTCAACGATGTCTaGAACTTCTCTTGCAATTCC +
Preference number: 5 (lower is better)
Translates to: LNFILNLSGVIVSDYIEPFLNDV*NFSCNS
Trigger: GGAATTGCAAGAGAAGTTCAAGACATCGTTGAGAAA...AGGTTCTATATAGTCAGAGACTATGACACCACTAAGGTTCAGAATAAAGTTTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284957.9
ENST00000439720.3
CDS TCA 72 bp GACTTGATACAGGTTGGATGTCACTGCTTCCCAAAGTaGTCTCGCCCGCGTGTCCGCTGGCGTCCGAGCCGC +
Preference number: 6 (lower is better)
Translates to: DLIQVGCHCFPK*SRPRVRWRPSR
Trigger: GCGGCTCGGACGCCAGCGGACACGCGGGCGAGATCACTTTGGGAAGCAGTGACATCCAACCTGTATCAAGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000607882.5
CDS GCA 72 bp CTGCTAACCACATCTCCTCCTTCTCTTGAGCCACAGTaGCCAGCAATCGTGTGCTTTGTCTGCAGCTATGGC +
Preference number: 6 (lower is better)
Translates to: LLTTSPPSLEPQ*PAIVCFVCSYG
Trigger: GCCATAGCTGCAGACAAAGCACACGATTGCTGGGCACTGTGGCTCAAGAGAAGGAGGAGATGTGGTTAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000450873.6
CDS GCA 72 bp TATAAACAAACATCTCCTCCTTCTCTTGAGCCACAGTaGCCAGCAATCGTGTGCTTTGTCTGCAGCTATGGC +
Preference number: 6 (lower is better)
Translates to: YKQTSPPSLEPQ*PAIVCFVCSYG
Trigger: GCCATAGCTGCAGACAAAGCACACGATTGCTGGGCACTGTGGCTCAAGAGAAGGAGGAGATGTTTGTTTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000442563.5