Pregenerated sensors for RAB5C (Homo sapiens)

Ensembl gene IDs: ENSG00000108774

Ensembl transcript IDs: ENST00000346213.9, ENST00000393860.7, ENST00000546881.1, ENST00000547517.5, ENST00000550013.1, ENST00000550406.1, ENST00000550504.5, ENST00000551338.1, ENST00000552162.5

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ACCAAGTCCTGCATCCCCAACAGCTGGTGTTCCAGTCCCGACATCTaGATCACTTGGTTAGTGACAGCTTCAGAGGCTCAACTTTTTGTT	+
Preference number: 5 (lower is better) Translates to: TKSCIPNSWCSSPDI*ITWLVTASEAQLFV Trigger: AACAAAAAGTTGAGCCTCTGAAGCTGTCACTAACCAAGTGATTCAGATGTCGGGACTGGAACACCAGCTGTTGGGGATGCAGGACTTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000393860.7 ENST00000547517.5
CDS TCA 90 bp	AAGCGGCCTGAAATCAGGGCTCTGATAACCCAATCCCTGGGACTTTaGGAAGATGAAGGGCAAAGGAAGAAGCAAGGGGAAATCTTTACT	+
Preference number: 5 (lower is better) Translates to: KRPEIRALITQSLGL*EDEGQRKKQGEIFT Trigger: AGTAAAGATTTCCCCTTGCTTCTTCCTTTGCCCTTCATCTTCTCAAAGTCCCAGGGATTGGGTTATCAGAGCCCTGATTTCAGGCCGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546881.1
CDS TCA 72 bp	GGGACCCCGCAGGCCCACTCTAGACCAGCAGACAGGTaGTATGCCCTTGCTGTGGTGGAGAGAGGAGGGGAG	+
Preference number: 6 (lower is better) Translates to: GTPQAHSRPADR*YALAVVERGGE Trigger: CTCCCCTCCTCTCTCCACCACAGCAAGGGCATATCACCTGTCTGCTGGTCTAGAGTGGGCCTGCGGGGTCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000551338.1
CDS CCA 72 bp	AACCAGCTTAAATTGACAGATCTTGTTCCCAGCAGCTaGTCCATTGGGTCGTGCTGCGCCTCCCCGACCCGC	+
Preference number: 6 (lower is better) Translates to: NQLKLTDLVPSS*SIGSCCASPTR Trigger: GCGGGTCGGGGAGGCGCAGCACGACCCAATGGACCAGCTGCTGGGAACAAGATCTGTCAATTTAAGCTGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000346213.9 ENST00000393860.7 ENST00000546881.1 ENST00000547517.5 ENST00000550013.1 ENST00000550406.1 ENST00000550504.5 ENST00000552162.5
CDS CCA 72 bp	GCAGCTTCCCATCTCCTCAAGGTCAAAGCATTTCTTTaGCAACCTTCAGGCCCCTCCCCGACTCCCTCATGC	+
Preference number: 6 (lower is better) Translates to: AASHLLKVKAFL*QPSGPSPTPSC Trigger: GCATGAGGGAGTCGGGGAGGGGCCTGAAGGTTGCCAAAGAAATGCTTTGACCTTGAGGAGATGGGAAGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000550013.1
CDS CAA 72 bp	GGCAGCTTCCCATCTCCTCAAGGTCAAAGCATTTCTTaGGCAACCTTCAGGCCCCTCCCCGACTCCCTCATG	+
Preference number: 6 (lower is better) Translates to: GSFPSPQGQSIS*ATFRPLPDSLM Trigger: CATGAGGGAGTCGGGGAGGGGCCTGAAGGTTGCCAAAGAAATGCTTTGACCTTGAGGAGATGGGAAGCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000550013.1
CDS TCA 72 bp	TGCATCCCCAACAGCTGGTGTTCCAGTCCCGACATCTaGATCACTTGGTTAGTGACAGCTTCAGAGGCTCAA	+
Preference number: 6 (lower is better) Translates to: CIPNSWCSSPDI*ITWLVTASEAQ Trigger: TTGAGCCTCTGAAGCTGTCACTAACCAAGTGATTCAGATGTCGGGACTGGAACACCAGCTGTTGGGGATGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000393860.7 ENST00000547517.5
CDS CAA 72 bp	CAACAGCTGGTGTTCCAGTCCCGACATCTGAATCACTaGGTTAGTGACAGCTTCAGAGGCTCAACTTTTTGT	+
Preference number: 6 (lower is better) Translates to: QQLVFQSRHLNH*VSDSFRGSTFC Trigger: ACAAAAAGTTGAGCCTCTGAAGCTGTCACTAACCAAGTGATTCAGATGTCGGGACTGGAACACCAGCTGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000393860.7 ENST00000547517.5

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